CsaV3_6G019130 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G019130
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Inosine triphosphate pyrophosphatase family protein
Location	chr6 : 13945034 .. 13945500 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGTGACGTTTTGTGACCGGCAACGCCAAGAAGCTCGAGGAAGTTTGAGCAATATTGGGAAATTCAATTCCTTTTCGTTCTCTCAAGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

mRNA sequence

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Coding sequence (CDS)

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Protein sequence

MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL

Homology

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BLAST of CsaV3_6G019130 vs. NCBI nr
Match: KGN47212.1 (hypothetical protein Csa_6G206350 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.2e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: PON63788.1 (Ham1-like protein [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGA 77
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP L +G+
Sbjct: 60 KEKARLAAIQVNGPVLVEDTCLCFNALKGLPVLFVGS 96

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: XP_020094355.1 (inosine triphosphate pyrophosphatase [Ananas comosus] >XP_020094356.1 inosine triphosphate pyrophosphatase [Ananas comosus] >OAY64599.1 Inosine triphosphate pyrophosphatase [Ananas comosus])

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EEF + + T I      L LP  +     I +E ARLAA QVNG VLVEDTCLCFNA
Sbjct: 23 KKLEEFRAILGTSIPFRSLKLDLPELQGEPEEISKEKARLAATQVNGPVLVEDTCLCFNA 82

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: XP_024200271.1 (inosine triphosphate pyrophosphatase-like [Rosa chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 12  QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
           +K EE  + + T I      L LP  +     I +E ARLAA+Q+NG VLVEDTCLCFNA
Sbjct: 25  KKLEEVRAILGTSIPFNTLKLDLPELQGEPEDISKEKARLAAVQINGPVLVEDTCLCFNA 84

Query: 72  LKGLPRLLLGAGEIGE 82
           LKGLP   +    +GE
Sbjct: 85  LKGLPGPYMFTTRVGE 100

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: XP_008391436.1 (PREDICTED: inosine triphosphate pyrophosphatase [Malus domestica])

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EE  + + T I      L LP  +     I +E ARLAAIQVNG VLVEDTCLCFNA
Sbjct: 25 KKLEEVRAILGTSIPFNSLKLDLPELQGEPEDISKEKARLAAIQVNGPVLVEDTCLCFNA 84

[Close]

BLAST of CsaV3_6G019130 vs. TAIR10
Match: AT4G13720.1 (Inosine triphosphate pyrophosphatase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of CsaV3_6G019130 vs. Swiss-Prot
Match: sp|B6TNW8|ITPA_MAIZE (Inosine triphosphate pyrophosphatase OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of CsaV3_6G019130 vs. Swiss-Prot
Match: sp|F6HS55|ITPA_VITVI (Inosine triphosphate pyrophosphatase OS=Vitis vinifera OX=29760 GN=VIT_05s0051g00580 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP
Sbjct: 59 KEKARLAAIQVNGPVLVEDTCLCFNALKGLP 89

[Close]

BLAST of CsaV3_6G019130 vs. Swiss-Prot
Match: sp|Q8L968|ITPA_ARATH (Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g13720 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-07
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of CsaV3_6G019130 vs. Swiss-Prot
Match: sp|B8BH95|ITPA_ORYSI (Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_33887 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 55 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 85

[Close]

BLAST of CsaV3_6G019130 vs. Swiss-Prot
Match: sp|Q7XDP2|ITPA_ORYSJ (Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0457500 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of CsaV3_6G019130 vs. TrEMBL
Match: tr|A0A0A0KFK7|A0A0A0KFK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G206350 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.7e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of CsaV3_6G019130 vs. TrEMBL
Match: tr|A0A2P5CRV4|A0A2P5CRV4_PARAD (Ham1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_129440 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGA 77
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP L +G+
Sbjct: 60 KEKARLAAIQVNGPVLVEDTCLCFNALKGLPVLFVGS 96

[Close]

BLAST of CsaV3_6G019130 vs. TrEMBL
Match: tr|A0A199UIN7|A0A199UIN7_ANACO (Inosine triphosphate pyrophosphatase OS=Ananas comosus OX=4615 GN=ACMD2_01920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EEF + + T I      L LP  +     I +E ARLAA QVNG VLVEDTCLCFNA
Sbjct: 23 KKLEEFRAILGTSIPFRSLKLDLPELQGEPEEISKEKARLAATQVNGPVLVEDTCLCFNA 82

[Close]

BLAST of CsaV3_6G019130 vs. TrEMBL
Match: tr|A0A2P5VNT4|A0A2P5VNT4_GOSBA (Inosine triphosphate pyrophosphatase OS=Gossypium barbadense OX=3634 GN=GOBAR_AA40213 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EE  S +   I      L LP  +     I +E ARLAA+QVNG VLVEDTCLCFNA
Sbjct: 33 KKLEEVKSILGQSIPFQSLKLDLPELQGEPEEISKEKARLAAVQVNGPVLVEDTCLCFNA 92

Query: 72 LKGLPRL 73
          LKGLP L
Sbjct: 93 LKGLPGL 99

[Close]

BLAST of CsaV3_6G019130 vs. TrEMBL
Match: tr|A0A2P6QRZ6|A0A2P6QRZ6_ROSCH (Inosine triphosphate pyrophosphatase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0396911 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EE  + + T I      L LP  +     I +E ARLAA+QVNG VLVEDTCLCFNA
Sbjct: 25 KKLEEVRAILGTSIPFNSLKLDLPELQGEPEDISKEKARLAAVQVNGPVLVEDTCLCFNA 84

The following BLAST results are available for this feature:

BLAST of CsaV3_6G019130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47212.1	1.2e-57	100.00	hypothetical protein Csa_6G206350 [Cucumis sativus]	[more]
PON63788.1	1.6e-06	78.38	Ham1-like protein [Parasponia andersonii]	[more]
XP_020094355.1	2.7e-06	56.92	inosine triphosphate pyrophosphatase [Ananas comosus] >XP_020094356.1 inosine tr...	[more]
XP_024200271.1	2.7e-06	48.68	inosine triphosphate pyrophosphatase-like [Rosa chinensis]	[more]
XP_008391436.1	6.0e-06	56.92	PREDICTED: inosine triphosphate pyrophosphatase [Malus domestica]	[more]

BLAST of CsaV3_6G019130 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13720.1	2.1e-08	80.65	Inosine triphosphate pyrophosphatase family protein	[more]

BLAST of CsaV3_6G019130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B6TNW8\|ITPA_MAIZE	4.4e-08	68.89	Inosine triphosphate pyrophosphatase OS=Zea mays OX=4577 PE=2 SV=1	[more]
sp\|F6HS55\|ITPA_VITVI	5.7e-08	87.10	Inosine triphosphate pyrophosphatase OS=Vitis vinifera OX=29760 GN=VIT_05s0051g0...	[more]
sp\|Q8L968\|ITPA_ARATH	3.7e-07	80.65	Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g1372...	[more]
sp\|B8BH95\|ITPA_ORYSI	4.9e-07	80.65	Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
sp\|Q7XDP2\|ITPA_ORYSJ	4.9e-07	80.65	Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of CsaV3_6G019130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFK7\|A0A0A0KFK7_CUCSA	7.7e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G206350 PE=4 SV=1	[more]
tr\|A0A2P5CRV4\|A0A2P5CRV4_PARAD	1.1e-06	78.38	Ham1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_129440 PE=4 SV=...	[more]
tr\|A0A199UIN7\|A0A199UIN7_ANACO	1.8e-06	56.92	Inosine triphosphate pyrophosphatase OS=Ananas comosus OX=4615 GN=ACMD2_01920 PE...	[more]
tr\|A0A2P5VNT4\|A0A2P5VNT4_GOSBA	4.0e-06	55.22	Inosine triphosphate pyrophosphatase OS=Gossypium barbadense OX=3634 GN=GOBAR_AA...	[more]
tr\|A0A2P6QRZ6\|A0A2P6QRZ6_ROSCH	5.2e-06	55.38	Inosine triphosphate pyrophosphatase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029001	ITPase-like_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G019130.1	CsaV3_6G019130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029001	Inosine triphosphate pyrophosphatase-like	GENE3D	G3DSA:3.90.950.10		coord: 9..92 e-value: 1.2E-5 score: 26.8
IPR029001	Inosine triphosphate pyrophosphatase-like	SUPERFAMILY	SSF52972	ITPase-like	coord: 37..70

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G019130	Melon (DHL92) v3.5.1	cucmeB441
CsaV3_6G019130	Melon (DHL92) v3.6.1	cucmedB431
CsaV3_6G019130	Watermelon (Charleston Gray)	cucwcgB474
CsaV3_6G019130	Watermelon (97103) v1	cucwmB552
CsaV3_6G019130	Watermelon (97103) v2	cucwmbB463
CsaV3_6G019130	Wax gourd	cucwgoB622
CsaV3_6G019130	Silver-seed gourd	carcucB0373
CsaV3_6G019130	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G019130	Cucurbita maxima (Rimu)	cmacucB0683
CsaV3_6G019130	Cucurbita moschata (Rifu)	cmocucB0667
CsaV3_6G019130	Cucurbita pepo (Zucchini)	cpecucB0357
CsaV3_6G019130	Wild cucumber (PI 183967)	cpicucB370
CsaV3_6G019130	Bottle gourd (USVL1VR-Ls)	cuclsiB433