CsaV3_6G016640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G016640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At5g59600
Locationchr6 : 12458221 .. 12458973 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCTCTTACCGGCGGCGCTGTATTTCTTCGAGCTCCAAACAGATTTCCGGCCATCCTTCGTGGGTTTTGTTCCTCGTCCGATGGATATATTGAACTCATCGAGACGTGTGGACGCAATCGAGATTTGAACTTCGGGAGGTCACTTCATGCTCGATTGATCATCGATGGATCAGCCCGTTTGACACATTTTGCTGCGAAGTTCATAGCCTTCTACGCCGCATGTGGCAAAATCAAGGATGCACGGATATTGTTCGACAAAATTCCCCGAACAAATCCTCGCCGGTGGATTGTTTTGATTGGGGCTTATTCTCGTTGTGGGTATTACCCAGAAGCTTTGAGTGTATTTTGTGAGCTGCAGAGAGGAGGATTAAGACCTAGCGAGTACATCATTCCCAGTGTCTTGAAAGCTTGTGGTCATCTCTCCGAGAAAACTACTGGGAGAAAACTCCATACCTTAATCCTCAAAAACTCCCTTGAATCTGATGCTTATGTCTGCAGTGCGTTGATAGATATGTATGCGAAAAGTGGAGAGGTTGAGAAAGCTCGGCGAGTGTTTGAATCAATGGCTGGGAAGGATTTGGTGGCATTGAATGCGATGGTTTCAGGGTATGCCCACCATGGATTAGCTGAGGAAGCTTTGAATCTGGTGGAGGAGATGCAAGTATTGGGTATAAAACCCAACCTGGTGACTTGGAACACTTTGGTTACAGGTTTTTCTCAGATTGGTGAGGAAGAAAATGGTTCGTGA

mRNA sequence

ATGCTCTCTCTTACCGGCGGCGCTGTATTTCTTCGAGCTCCAAACAGATTTCCGGCCATCCTTCGTGGGTTTTGTTCCTCGTCCGATGGATATATTGAACTCATCGAGACGTGTGGACGCAATCGAGATTTGAACTTCGGGAGGTCACTTCATGCTCGATTGATCATCGATGGATCAGCCCGTTTGACACATTTTGCTGCGAAGTTCATAGCCTTCTACGCCGCATGTGGCAAAATCAAGGATGCACGGATATTGTTCGACAAAATTCCCCGAACAAATCCTCGCCGGTGGATTGTTTTGATTGGGGCTTATTCTCGTTGTGGGTATTACCCAGAAGCTTTGAGTGTATTTTGTGAGCTGCAGAGAGGAGGATTAAGACCTAGCGAGTACATCATTCCCAGTGTCTTGAAAGCTTGTGGTCATCTCTCCGAGAAAACTACTGGGAGAAAACTCCATACCTTAATCCTCAAAAACTCCCTTGAATCTGATGCTTATGTCTGCAGTGCGTTGATAGATATGTATGCGAAAAGTGGAGAGGTTGAGAAAGCTCGGCGAGTGTTTGAATCAATGGCTGGGAAGGATTTGGTGGCATTGAATGCGATGGTTTCAGGGTATGCCCACCATGGATTAGCTGAGGAAGCTTTGAATCTGGTGGAGGAGATGCAAGTATTGGGTATAAAACCCAACCTGGTGACTTGGAACACTTTGGTTACAGGTTTTTCTCAGATTGGTGAGGAAGAAAATGGTTCGTGA

Coding sequence (CDS)

ATGCTCTCTCTTACCGGCGGCGCTGTATTTCTTCGAGCTCCAAACAGATTTCCGGCCATCCTTCGTGGGTTTTGTTCCTCGTCCGATGGATATATTGAACTCATCGAGACGTGTGGACGCAATCGAGATTTGAACTTCGGGAGGTCACTTCATGCTCGATTGATCATCGATGGATCAGCCCGTTTGACACATTTTGCTGCGAAGTTCATAGCCTTCTACGCCGCATGTGGCAAAATCAAGGATGCACGGATATTGTTCGACAAAATTCCCCGAACAAATCCTCGCCGGTGGATTGTTTTGATTGGGGCTTATTCTCGTTGTGGGTATTACCCAGAAGCTTTGAGTGTATTTTGTGAGCTGCAGAGAGGAGGATTAAGACCTAGCGAGTACATCATTCCCAGTGTCTTGAAAGCTTGTGGTCATCTCTCCGAGAAAACTACTGGGAGAAAACTCCATACCTTAATCCTCAAAAACTCCCTTGAATCTGATGCTTATGTCTGCAGTGCGTTGATAGATATGTATGCGAAAAGTGGAGAGGTTGAGAAAGCTCGGCGAGTGTTTGAATCAATGGCTGGGAAGGATTTGGTGGCATTGAATGCGATGGTTTCAGGGTATGCCCACCATGGATTAGCTGAGGAAGCTTTGAATCTGGTGGAGGAGATGCAAGTATTGGGTATAAAACCCAACCTGGTGACTTGGAACACTTTGGTTACAGGTTTTTCTCAGATTGGTGAGGAAGAAAATGGTTCGTGA

Protein sequence

MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEENGS
Homology
[Close]
BLAST of CsaV3_6G016640 vs. NCBI nr
Match: XP_004143130.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis sativus] >KGN47130.1 hypothetical protein Csa_6G190210 [Cucumis sativus])

HSP 1 Score: 461.8 bits (1187), Expect = 1.4e-126
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA
Sbjct: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL
Sbjct: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV
Sbjct: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 228

[Close]
BLAST of CsaV3_6G016640 vs. NCBI nr
Match: XP_008464099.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 1.5e-120
Identity = 219/228 (96.05%), Postives = 223/228 (97.81%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSL GGAVFLRAPNR PAILRGFCSSSD YIELIETCGRNRDLNFGR LHARLII+GSA
Sbjct: 1   MLSLAGGAVFLRAPNRLPAILRGFCSSSDEYIELIETCGRNRDLNFGRLLHARLIINGSA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAKFIAFYAACGKIKDAR+LFDKIP+TNPRRWIVLIGAYSRCGYYPEALSVF EL
Sbjct: 61  RLTHFAAKFIAFYAACGKIKDARVLFDKIPQTNPRRWIVLIGAYSRCGYYPEALSVFGEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILK+SLESDAYVCSALIDMYAKSGEV
Sbjct: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKHSLESDAYVCSALIDMYAKSGEV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 228

[Close]
BLAST of CsaV3_6G016640 vs. NCBI nr
Match: XP_023511811.1 (pentatricopeptide repeat-containing protein At5g59600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.4 bits (1012), Expect = 2.8e-106
Identity = 197/228 (86.40%), Postives = 209/228 (91.67%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSL GGA FL+A NRFPAI RGFCSSSD YI+LIET GR+R+LNFGR LHARLII+G A
Sbjct: 1   MLSLAGGAAFLKATNRFPAIRRGFCSSSDEYIKLIETYGRDRELNFGRLLHARLIINGLA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAK IAFYAACGKI DAR +FDKIP+TNPRRWIVLIGAYSR G+Y EALSVFCEL
Sbjct: 61  RLTHFAAKLIAFYAACGKISDAREVFDKIPQTNPRRWIVLIGAYSRYGFYTEALSVFCEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QR G RPSEYIIPSVLKACGHLS+  TGRKLH LILK SLESDAYVCSALIDMYAKSG+V
Sbjct: 121 QRQGSRPSEYIIPSVLKACGHLSDIPTGRKLHALILKYSLESDAYVCSALIDMYAKSGQV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVE+MQVLG+KP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEKMQVLGVKP 228

[Close]
BLAST of CsaV3_6G016640 vs. NCBI nr
Match: XP_022986839.1 (pentatricopeptide repeat-containing protein At5g59600 [Cucurbita maxima])

HSP 1 Score: 392.9 bits (1008), Expect = 8.2e-106
Identity = 197/228 (86.40%), Postives = 207/228 (90.79%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSL GGA F RA NRFPAI RGFCSSSD YI+LIET GR+R+LNFGR LHARLII+G A
Sbjct: 1   MLSLAGGAAFFRATNRFPAIRRGFCSSSDEYIKLIETYGRDRELNFGRLLHARLIINGLA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAK IAFYAACGKI DAR LFDKIP+TNPRRWIVLIGAYSR G+Y EALSVFCEL
Sbjct: 61  RLTHFAAKLIAFYAACGKINDARELFDKIPQTNPRRWIVLIGAYSRYGFYTEALSVFCEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QR G  PSEYIIPSVLKACGHLS+  TGRKLH LILK SLESDAYVCSALIDMYAKSG+V
Sbjct: 121 QRQGSTPSEYIIPSVLKACGHLSDIPTGRKLHALILKYSLESDAYVCSALIDMYAKSGQV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVE+MQVLG+KP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEKMQVLGVKP 228

[Close]
BLAST of CsaV3_6G016640 vs. NCBI nr
Match: XP_022148483.1 (pentatricopeptide repeat-containing protein At5g59600-like [Momordica charantia])

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 196/228 (85.96%), Postives = 207/228 (90.79%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           M SL GGA F RAP+RF AI RGF SSSD Y+ELIET GR+R+LNFGR LHARLI +G A
Sbjct: 1   MHSLAGGAAFRRAPSRFLAIRRGFLSSSDAYVELIETYGRDRELNFGRLLHARLITNGLA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAK IAFYAACGKIKDARILFDKIP+TNPRRWIVLIGAY+R G+Y EALSVFCEL
Sbjct: 61  RLTHFAAKLIAFYAACGKIKDARILFDKIPQTNPRRWIVLIGAYARSGFYTEALSVFCEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QRGG RPSEYIIPSVLKACGHLS+  TGRKLH LILK SLESDAYVCSALIDMYAKSG+V
Sbjct: 121 QRGGSRPSEYIIPSVLKACGHLSDNPTGRKLHGLILKYSLESDAYVCSALIDMYAKSGQV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQV G+KP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVFGVKP 228

[Close]
BLAST of CsaV3_6G016640 vs. TAIR10
Match: AT5G59600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 204.5 bits (519), Expect = 7.5e-53
Identity = 101/201 (50.25%), Postives = 142/201 (70.65%), Query Frame = 0 

Query: 27  SSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILF 86
           S   Y+ELIE  GR+R    GR LHA L+  G ARLT  AAK + FY  CGK+ DAR +F
Sbjct: 15  SIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVF 74

Query: 87  DKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKT 146
           D++P+ +    +V+IGA +R GYY E+L  F E+ + GL+   +I+PS+LKA  +L ++ 
Sbjct: 75  DEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDRE 134

Query: 147 TGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYA 206
            G+ +H L+LK S ESDA++ S+LIDMY+K GEV  AR+VF  +  +DLV  NAM+SGYA
Sbjct: 135 FGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYA 194

Query: 207 HHGLAEEALNLVEEMQVLGIK 228
           ++  A+EALNLV++M++LGIK
Sbjct: 195 NNSQADEALNLVKDMKLLGIK 215

[Close]
BLAST of CsaV3_6G016640 vs. TAIR10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 78/220 (35.45%), Postives = 131/220 (59.55%), Query Frame = 0 

Query: 30  GYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKI 89
           GY  L+  C   R L  G+ +HA +I       T+   + + FY  C  ++DAR + D++
Sbjct: 54  GYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEM 113

Query: 90  PRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGR 149
           P  N   W  +I  YS+ G+  EAL+VF E+ R   +P+E+   +VL +C   S    G+
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGK 173

Query: 150 KLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHG 209
           ++H LI+K + +S  +V S+L+DMYAK+G++++AR +FE +  +D+V+  A+++GYA  G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233

Query: 210 LAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
           L EEAL +   +   G+ PN VT+ +L+T  S +   ++G
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273

[Close]
BLAST of CsaV3_6G016640 vs. TAIR10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-37
Identity = 77/221 (34.84%), Postives = 125/221 (56.56%), Query Frame = 0 

Query: 31  YIELIETCGRNRDLNFGRSLHARLIIDGS--ARLTHFAAKFIAFYAACGKIKDARILFDK 90
           Y E+++ C   RDL+ G+ +HAR++ +G   AR  +   K + FYA C  ++ A +LF K
Sbjct: 73  YGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSK 132

Query: 91  IPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTG 150
           +   N   W  +IG   R G    AL  F E+    + P  +++P+V KACG L     G
Sbjct: 133 LRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFG 192

Query: 151 RKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHH 210
           R +H  ++K+ LE   +V S+L DMY K G ++ A +VF+ +  ++ VA NA++ GY  +
Sbjct: 193 RGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQN 252

Query: 211 GLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
           G  EEA+ L  +M+  G++P  VT +T ++  + +G  E G
Sbjct: 253 GKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG 293

[Close]
BLAST of CsaV3_6G016640 vs. TAIR10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-35
Identity = 74/212 (34.91%), Postives = 114/212 (53.77%), Query Frame = 0 

Query: 38  CGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRW 97
           C +  ++  GRS+H+ L   G  R  H     I  YA CG++  AR LFD+I   +   W
Sbjct: 142 CAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSW 201

Query: 98  IVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILK 157
             +I  YS  GY  +A+ +F +++  G  P E  + S+L AC HL +  TGR L  + + 
Sbjct: 202 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 261

Query: 158 NSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNL 217
             +    ++ S LI MY K G+++ ARRVF  M  KD VA  AM++ Y+ +G + EA  L
Sbjct: 262 KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKL 321

Query: 218 VEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
             EM+  G+ P+  T +T+++    +G  E G
Sbjct: 322 FFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353

[Close]
BLAST of CsaV3_6G016640 vs. TAIR10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-34
Identity = 79/222 (35.59%), Postives = 132/222 (59.46%), Query Frame = 0 

Query: 31  YIELIETCGRNRDLNFGRSLHARLI-----IDGSARLTHFAAKFIAFYAACGKIKDARIL 90
           ++ L+ETC R+R+L  G+ +H  L+     +  S  L +        YA+C +++ AR +
Sbjct: 2   FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLT----RLYASCNEVELARHV 61

Query: 91  FDKI--PRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLS 150
           FD+I  PR NP  W ++I AY+   +  +AL ++ ++   G+RP++Y  P VLKAC  L 
Sbjct: 62  FDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLR 121

Query: 151 EKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVS 210
               G+ +H+ +  +   +D YVC+AL+D YAK GE+E A +VF+ M  +D+VA NAM+S
Sbjct: 122 AIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMIS 181

Query: 211 GYAHHGLAEEALNLVEEM-QVLGIKPNLVTWNTLVTGFSQIG 245
           G++ H    + + L  +M ++ G+ PNL   +T+V  F  +G
Sbjct: 182 GFSLHCCLTDVIGLFLDMRRIDGLSPNL---STIVGMFPALG 216

[Close]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match: sp|Q9FGR2|PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-51
Identity = 101/201 (50.25%), Postives = 142/201 (70.65%), Query Frame = 0 

Query: 27  SSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILF 86
           S   Y+ELIE  GR+R    GR LHA L+  G ARLT  AAK + FY  CGK+ DAR +F
Sbjct: 15  SIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVF 74

Query: 87  DKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKT 146
           D++P+ +    +V+IGA +R GYY E+L  F E+ + GL+   +I+PS+LKA  +L ++ 
Sbjct: 75  DEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDRE 134

Query: 147 TGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYA 206
            G+ +H L+LK S ESDA++ S+LIDMY+K GEV  AR+VF  +  +DLV  NAM+SGYA
Sbjct: 135 FGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYA 194

Query: 207 HHGLAEEALNLVEEMQVLGIK 228
           ++  A+EALNLV++M++LGIK
Sbjct: 195 NNSQADEALNLVKDMKLLGIK 215

[Close]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match: sp|Q9LIC3|PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-38
Identity = 78/220 (35.45%), Postives = 131/220 (59.55%), Query Frame = 0 

Query: 30  GYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKI 89
           GY  L+  C   R L  G+ +HA +I       T+   + + FY  C  ++DAR + D++
Sbjct: 54  GYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEM 113

Query: 90  PRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGR 149
           P  N   W  +I  YS+ G+  EAL+VF E+ R   +P+E+   +VL +C   S    G+
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGK 173

Query: 150 KLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHG 209
           ++H LI+K + +S  +V S+L+DMYAK+G++++AR +FE +  +D+V+  A+++GYA  G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233

Query: 210 LAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
           L EEAL +   +   G+ PN VT+ +L+T  S +   ++G
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273

[Close]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match: sp|Q9FM64|PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-36
Identity = 77/221 (34.84%), Postives = 125/221 (56.56%), Query Frame = 0 

Query: 31  YIELIETCGRNRDLNFGRSLHARLIIDGS--ARLTHFAAKFIAFYAACGKIKDARILFDK 90
           Y E+++ C   RDL+ G+ +HAR++ +G   AR  +   K + FYA C  ++ A +LF K
Sbjct: 73  YGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSK 132

Query: 91  IPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTG 150
           +   N   W  +IG   R G    AL  F E+    + P  +++P+V KACG L     G
Sbjct: 133 LRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFG 192

Query: 151 RKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHH 210
           R +H  ++K+ LE   +V S+L DMY K G ++ A +VF+ +  ++ VA NA++ GY  +
Sbjct: 193 RGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQN 252

Query: 211 GLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
           G  EEA+ L  +M+  G++P  VT +T ++  + +G  E G
Sbjct: 253 GKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG 293

[Close]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match: sp|O64705|PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-34
Identity = 74/212 (34.91%), Postives = 114/212 (53.77%), Query Frame = 0 

Query: 38  CGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRW 97
           C +  ++  GRS+H+ L   G  R  H     I  YA CG++  AR LFD+I   +   W
Sbjct: 142 CAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSW 201

Query: 98  IVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILK 157
             +I  YS  GY  +A+ +F +++  G  P E  + S+L AC HL +  TGR L  + + 
Sbjct: 202 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 261

Query: 158 NSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNL 217
             +    ++ S LI MY K G+++ ARRVF  M  KD VA  AM++ Y+ +G + EA  L
Sbjct: 262 KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKL 321

Query: 218 VEEMQVLGIKPNLVTWNTLVTGFSQIGEEENG 250
             EM+  G+ P+  T +T+++    +G  E G
Sbjct: 322 FFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353

[Close]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match: sp|Q9LUS3|PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-33
Identity = 79/222 (35.59%), Postives = 132/222 (59.46%), Query Frame = 0 

Query: 31  YIELIETCGRNRDLNFGRSLHARLI-----IDGSARLTHFAAKFIAFYAACGKIKDARIL 90
           ++ L+ETC R+R+L  G+ +H  L+     +  S  L +        YA+C +++ AR +
Sbjct: 2   FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLT----RLYASCNEVELARHV 61

Query: 91  FDKI--PRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLS 150
           FD+I  PR NP  W ++I AY+   +  +AL ++ ++   G+RP++Y  P VLKAC  L 
Sbjct: 62  FDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLR 121

Query: 151 EKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVS 210
               G+ +H+ +  +   +D YVC+AL+D YAK GE+E A +VF+ M  +D+VA NAM+S
Sbjct: 122 AIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMIS 181

Query: 211 GYAHHGLAEEALNLVEEM-QVLGIKPNLVTWNTLVTGFSQIG 245
           G++ H    + + L  +M ++ G+ PNL   +T+V  F  +G
Sbjct: 182 GFSLHCCLTDVIGLFLDMRRIDGLSPNL---STIVGMFPALG 216

[Close]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match: tr|A0A0A0KBQ9|A0A0A0KBQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190210 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 9.5e-127
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA
Sbjct: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL
Sbjct: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV
Sbjct: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 228

[Close]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match: tr|A0A1S3CL56|A0A1S3CL56_CUCME (pentatricopeptide repeat-containing protein At5g59600 OS=Cucumis melo OX=3656 GN=LOC103502062 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.0e-120
Identity = 219/228 (96.05%), Postives = 223/228 (97.81%), Query Frame = 0 

Query: 1   MLSLTGGAVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSA 60
           MLSL GGAVFLRAPNR PAILRGFCSSSD YIELIETCGRNRDLNFGR LHARLII+GSA
Sbjct: 1   MLSLAGGAVFLRAPNRLPAILRGFCSSSDEYIELIETCGRNRDLNFGRLLHARLIINGSA 60

Query: 61  RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
           RLTHFAAKFIAFYAACGKIKDAR+LFDKIP+TNPRRWIVLIGAYSRCGYYPEALSVF EL
Sbjct: 61  RLTHFAAKFIAFYAACGKIKDARVLFDKIPQTNPRRWIVLIGAYSRCGYYPEALSVFGEL 120

Query: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
           QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILK+SLESDAYVCSALIDMYAKSGEV
Sbjct: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKHSLESDAYVCSALIDMYAKSGEV 180

Query: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP
Sbjct: 181 EKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 228

[Close]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match: tr|A0A2P5D685|A0A2P5D685_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_261020 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.1e-77
Identity = 149/242 (61.57%), Postives = 186/242 (76.86%), Query Frame = 0 

Query: 7   GAVFLRAPNRFPAILRG-FCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHF 66
           G   L A    P I R  F +S+D Y ++IE  GR+RDL  GR LHA LII G AR TH 
Sbjct: 7   GPALLVARRINPIICRRLFQTSTDAYGKVIEIYGRDRDLESGRVLHAHLIISGLARRTHL 66

Query: 67  AAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGL 126
           A+K IA Y  CGK+  AR +FDKIP+TN RRWIVL GAY+RCG++ +AL VF E+Q+ GL
Sbjct: 67  ASKLIALYVVCGKVSTARKVFDKIPQTNIRRWIVLTGAYARCGFHQQALDVFREMQKMGL 126

Query: 127 RPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARR 186
           RP+ +++PSVLKACGHLS+  TG KLH +ILK+S + D +V S+LIDMY+K+G+V+KARR
Sbjct: 127 RPNIFVVPSVLKACGHLSDSRTGDKLHAVILKHSFDYDLFVNSSLIDMYSKTGQVQKARR 186

Query: 187 VFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLG-IKPNLVTWNTLVTGFSQIG 246
           VF++M  KDLV+LNA+VSGYA HGL EEALNLVE+MQV G + PN+VTWNTLV GFSQ G
Sbjct: 187 VFDTMVEKDLVSLNALVSGYAQHGLPEEALNLVEKMQVEGRVTPNIVTWNTLVAGFSQRG 246

[Close]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match: tr|A0A251NN95|A0A251NN95_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G071300 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 131/211 (62.09%), Postives = 164/211 (77.73%), Query Frame = 0 

Query: 18  PAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACG 77
           P I R F S+ D Y +LIET  R+R+L+  R LHA LI  GSAR TH A+K IA YAACG
Sbjct: 17  PIIHRPFQSTPDYYTKLIETYARDRELHPARLLHAHLITIGSARSTHLASKLIALYAACG 76

Query: 78  KIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLK 137
           +I  AR +FDKIP+TN RRW  LIGAY+RCG+Y +A+ VF E+QR   RP++ +IPSVLK
Sbjct: 77  QIAHARKVFDKIPQTNIRRWFALIGAYARCGFYQQAIDVFWEMQRKVSRPNKIVIPSVLK 136

Query: 138 ACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVA 197
           ACGHLS+  TG+K+H ++L+ S E DA+V SALIDMY+K+G VEKA++VF+ M  KD VA
Sbjct: 137 ACGHLSDLKTGKKIHAVVLRFSFEFDAFVSSALIDMYSKNGRVEKAQQVFDMMVEKDSVA 196

Query: 198 LNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           LNAMVSG+A HGLA EAL LVE+MQ+LG+KP
Sbjct: 197 LNAMVSGFAQHGLAREALRLVEKMQLLGLKP 227

[Close]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match: tr|A0A166DD28|A0A166DD28_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005949 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 120/213 (56.34%), Postives = 164/213 (77.00%), Query Frame = 0 

Query: 20  ILRGFCS----SSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAA 79
           I+   CS    SSD Y+++IE  GR+R L  G++LH  L+++G +RLTH+A+K +AFY  
Sbjct: 13  IITDHCSLHTLSSDEYVKIIEIYGRDRALQSGKALHGHLVVNGLSRLTHYASKLVAFYTE 72

Query: 80  CGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSV 139
           C ++ DAR +FDKIP+TN RRWIVL+GAY+R G++ EA+ VFCE+Q  G+ P++++ PS+
Sbjct: 73  CRQLNDARKVFDKIPQTNVRRWIVLVGAYARHGFHQEAMDVFCEMQVEGVEPNKFVFPSI 132

Query: 140 LKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDL 199
           LKA GHLS+K TG K+HT++LKN  E+DA+V SAL+DMYAK G+++KAR VF++   KDL
Sbjct: 133 LKASGHLSDKRTGEKIHTVVLKNGFETDAFVVSALVDMYAKCGKIDKARSVFDNFGEKDL 192

Query: 200 VALNAMVSGYAHHGLAEEALNLVEEMQVLGIKP 229
           V LN MVSGY HH   EEALNLV+EMQ+  IKP
Sbjct: 193 VTLNVMVSGYVHHRCVEEALNLVKEMQLTVIKP 225

The following BLAST results are available for this feature:
BLAST of CsaV3_6G016640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143130.11.4e-126100.00PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis sativu... [more]
XP_008464099.11.5e-12096.05PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis melo][more]
XP_023511811.12.8e-10686.40pentatricopeptide repeat-containing protein At5g59600 [Cucurbita pepo subsp. pep... [more]
XP_022986839.18.2e-10686.40pentatricopeptide repeat-containing protein At5g59600 [Cucurbita maxima][more]
XP_022148483.11.1e-10585.96pentatricopeptide repeat-containing protein At5g59600-like [Momordica charantia][more]
BLAST of CsaV3_6G016640 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59600.17.5e-5350.25Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G13770.11.6e-3935.45Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G55740.11.5e-3734.84Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G34400.13.2e-3534.91Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G16610.11.2e-3435.59pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of CsaV3_6G016640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FGR2|PP436_ARATH1.4e-5150.25Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana OX... [more]
sp|Q9LIC3|PP227_ARATH2.9e-3835.45Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
sp|Q9FM64|PP431_ARATH2.7e-3634.84Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop... [more]
sp|O64705|PP184_ARATH5.7e-3434.91Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX... [more]
sp|Q9LUS3|PP237_ARATH2.2e-3335.59Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_6G016640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBQ9|A0A0A0KBQ9_CUCSA9.5e-127100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190210 PE=4 SV=1[more]
tr|A0A1S3CL56|A0A1S3CL56_CUCME1.0e-12096.05pentatricopeptide repeat-containing protein At5g59600 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P5D685|A0A2P5D685_9ROSA4.1e-7761.57Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|A0A251NN95|A0A251NN95_PRUPE2.2e-6762.09Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G071300 PE=4 SV=1[more]
tr|A0A166DD28|A0A166DD28_DAUCA1.4e-6656.34Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005949 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0007062 sister chromatid cohesion
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G016640.1CsaV3_6G016640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 144..250
e-value: 6.0E-25
score: 90.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 19..143
e-value: 3.2E-13
score: 51.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 65..195
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 193..241
e-value: 9.4E-12
score: 44.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 99..128
e-value: 5.3E-4
score: 18.0
coord: 197..229
e-value: 4.2E-7
score: 27.7
coord: 165..194
e-value: 1.7E-6
score: 25.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 97..124
e-value: 8.7E-5
score: 22.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 5.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..250
score: 6.434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 163..193
score: 9.843
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..228
score: 11.959
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 25..191
NoneNo IPR availablePANTHERPTHR24015:SF532SUBFAMILY NOT NAMEDcoord: 169..233
NoneNo IPR availablePANTHERPTHR24015:SF532SUBFAMILY NOT NAMEDcoord: 25..191
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 169..233

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G016640CSPI06G14270Wild cucumber (PI 183967)cpicucB364
CsaV3_6G016640Cucsa.138860Cucumber (Gy14) v1cgycucB209
CsaV3_6G016640CmaCh20G003840Cucurbita maxima (Rimu)cmacucB0665
CsaV3_6G016640CmaCh02G007840Cucurbita maxima (Rimu)cmacucB0740
CsaV3_6G016640CmoCh20G004170Cucurbita moschata (Rifu)cmocucB0650
CsaV3_6G016640Cp4.1LG16g06330Cucurbita pepo (Zucchini)cpecucB0359
CsaV3_6G016640CsGy6G014120Cucumber (Gy14) v2cgybcucB298
CsaV3_6G016640Carg03333Silver-seed gourdcarcucB0374
CsaV3_6G016640Cla013323Watermelon (97103) v1cucwmB536
CsaV3_6G016640ClCG02G019940Watermelon (Charleston Gray)cucwcgB457
CsaV3_6G016640Lsi10G013960Bottle gourd (USVL1VR-Ls)cuclsiB438
CsaV3_6G016640MELO3C035098.2Melon (DHL92) v3.6.1cucmedB436
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_6G016640CsaV3_7G009950Cucumber (Chinese Long) v3cuccucB217
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G016640Cucumber (Chinese Long) v3cuccucB207
CsaV3_6G016640Silver-seed gourdcarcucB0107
CsaV3_6G016640Silver-seed gourdcarcucB0188
CsaV3_6G016640Silver-seed gourdcarcucB0416
CsaV3_6G016640Silver-seed gourdcarcucB0953
CsaV3_6G016640Silver-seed gourdcarcucB1044
CsaV3_6G016640Cucumber (Gy14) v2cgybcucB048
CsaV3_6G016640Cucurbita maxima (Rimu)cmacucB0264
CsaV3_6G016640Cucurbita maxima (Rimu)cmacucB0998
CsaV3_6G016640Cucurbita moschata (Rifu)cmocucB0253
CsaV3_6G016640Cucurbita moschata (Rifu)cmocucB0729
CsaV3_6G016640Cucurbita moschata (Rifu)cmocucB0983
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB0565
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB0566
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB0653
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB0781
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB0933
CsaV3_6G016640Cucurbita pepo (Zucchini)cpecucB1080
CsaV3_6G016640Melon (DHL92) v3.5.1cucmeB445
CsaV3_6G016640Watermelon (97103) v2cucwmbB445
CsaV3_6G016640Watermelon (97103) v2cucwmbB503
CsaV3_6G016640Wax gourdcucwgoB626