CmaCh02G007840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G007840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 4666399 .. 4668201 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGCCGAACCCTTCTCATGATTCAGGTACTTGTGTAAAGGCAATAAGGTCTAGCAAAGCAGGCAAGAATTTGAATGATTATGCACTAAAAGCCTAATGAGATTACCAAGTCCGTAAAACGTTTCTTCATCTTCGGTGTTTCTACTTCGCCTAAAGTCGTTTGACGAATATGAGAAGTCAGATCCATGATTCCCATGATCATATTTCCTTCTAGATTCAGAATTCAGCAATGTGTTGTATGCATGCTTTATACGCATAAATTTCTCCTGTGCATTAGGCTACATAGAACAAACATGAAAATTTCACTCAGATTTCATATCTAGAACATTGAAAGAGCAATCTCAAAAGAATCCCCAATTTCATAAGTGAAACAGAGCCAAAATAAACTTAGAACATCCTAATTTGAGCCTTCGTGCTCTAATTTCCCTCTCAAAACTCATGGGGTAACAAGGTTTTAGTTTCCTATGATAGAAAGTTCATTGGAACATGTCCCAGAAACTATCAAATTCCACAACTAATTCACTTTTTTTGTTCTTCGTTCTTCTTTTTCAGTAATTCCTATCGCAGTGACTTGAATCTTTCTCTTGCAATTCCCAACTTCGATTCGTTTATCAAGAAAGATAATCCAAATCCTACCAGAACACTAAAGCTACCCAGAACAAGAAAAACGCAGAAAAGTAACTCAAAATAGAGGGCAAAATTTACTCCGTTACCTCTTTGTTGACATCGGGATGATACTTGAGAGCCAGTTTCCGATAAGCCCTCTTGATTTCATTTGGAGTTGCAGTCGGAGAAACACCAAGCACTTCGTACGGCGACTCTCTGCGACTCGCTCTCACCAGGGTTAAGCAGTTCCTCCTCCTATACGTCAAGTAACTCGATTCAAAGCTCGGCGGCACCAACAACGGGTAGCTGAAGAACCGGCGGAAGGATATTGAAGATTTTGCTTGATTTCGCGAAAAGAAAATAGAAGGATGAGAAGCAGATCTTGAGAAGGCGTCGGAAATAATTTGCGTTGTAGCCAATTCGAGCATGTTCGTGAACTAATCGTCGATTCCTTTTCTCTCTCGGTTTGTTTTTCTTCTCATTTTACTTGAGGCTTCAATTGTGACATTTGGCTTTCGGATTTGGTTTTGTTGCTTGTGGCCCTCACTTTTTGGCGTTGGATTAAATAGGTTTCTACACGAAATTACTCATTTGCCATACATTCTTATATCCCACTTTTGGCGCCGCCGCTGCATTTCTCAGGGCTCTGAACAGATTTCCGGCCATCCGCCGTGGATTTCTTTCCTTTTCCGATGAGTACGTTGAGCTTATCGACTCCACACTCAGATTAATCATCAATGGACTAATCCGTTCGACACATTTTGCTGCGAAGCTCATAGGTTTCTACGCCGCATGTGGGTTCAACAAAATTACCCACATAACCTCCCGCTGGTGGATTGTCTTGATTGGGGTCTATTCTCGTCTCTGAAGGGTGGAGTGTATTGTTAGATCCTACGTCAATTGAAAAGAAAACTGAATATTGCTTATAGAGGGGTAGATAACTCTCTCTCCATACTTCTTCGAGATAAAGTTCAAAAGAACAATATTGGTAAGCAGTAAATTTGGGCTATTACAAGAATTCGATAGCATGTGAGTGTGAGTGAATGGTAGGGAAGGATTTGGTGGCATTGAATGTTATTTTTTATGATATCTGAAAGGAATTCAGCAACTTGAAACTCCATGATTTTTTTGCTATGCTAGCTAATCAAGGAACTCAGATGATGAATGAAGATGAGAAGAAGTCGATCATCTGA

mRNA sequence

ATGGTGAGCCGAACCCTTCTCATGATTCAGTCGGAGAAACACCAAGCACTTCGTACGGCGACTCTCTGCGACTCGCTCTCACCAGGGTTAAGCAGTTCCTCCTCCTATACGTCAAGTAACTCGATTCAAAGCTCGGCGGCACCAACAACGGGTTTCTACACGAAATTACTCATTTGCCATACATTCTTATATCCCACTTTTGGCGCCGCCGCTGCATTTCTCAGGGCTCTGAACAGATTTCCGGCCATCCGCCGTGGATTTCTTTCCTTTTCCGATGAGTACGTTGAGCTTATCGACTCCACACTCAGATTAATCATCAATGGACTAATCCGTTCGACACATTTTGCTGCGAAGCTCATAGCTAATCAAGGAACTCAGATGATGAATGAAGATGAGAAGAAGTCGATCATCTGA

Coding sequence (CDS)

ATGGTGAGCCGAACCCTTCTCATGATTCAGTCGGAGAAACACCAAGCACTTCGTACGGCGACTCTCTGCGACTCGCTCTCACCAGGGTTAAGCAGTTCCTCCTCCTATACGTCAAGTAACTCGATTCAAAGCTCGGCGGCACCAACAACGGGTTTCTACACGAAATTACTCATTTGCCATACATTCTTATATCCCACTTTTGGCGCCGCCGCTGCATTTCTCAGGGCTCTGAACAGATTTCCGGCCATCCGCCGTGGATTTCTTTCCTTTTCCGATGAGTACGTTGAGCTTATCGACTCCACACTCAGATTAATCATCAATGGACTAATCCGTTCGACACATTTTGCTGCGAAGCTCATAGCTAATCAAGGAACTCAGATGATGAATGAAGATGAGAAGAAGTCGATCATCTGA

Protein sequence

MVSRTLLMIQSEKHQALRTATLCDSLSPGLSSSSSYTSSNSIQSSAAPTTGFYTKLLICHTFLYPTFGAAAAFLRALNRFPAIRRGFLSFSDEYVELIDSTLRLIINGLIRSTHFAAKLIANQGTQMMNEDEKKSII
Homology
[Close]
BLAST of CmaCh02G007840 vs. TrEMBL
Match: A0A0A0KBQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190210 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 71  AAFLRALNRFPAIRRGFLSFSDEYVELIDST-------------LRLIINGLIRSTHFAA 122
           A FLRA NRFPAI RGF S SD Y+ELI++               RLII+G  R THFAA
Sbjct: 8   AVFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAA 67

[Close]
BLAST of CmaCh02G007840 vs. NCBI nr
Match: gi|659128203|ref|XP_008464099.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 36/69 (52.17%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 66  TFGAAAAFLRALNRFPAIRRGFLSFSDEYVELIDST-------------LRLIINGLIRS 122
           +    A FLRA NR PAI RGF S SDEY+ELI++               RLIING  R 
Sbjct: 3   SLAGGAVFLRAPNRLPAILRGFCSSSDEYIELIETCGRNRDLNFGRLLHARLIINGSARL 62

The following BLAST results are available for this feature:
BLAST of CmaCh02G007840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBQ9_CUCSA7.2e-0654.69Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190210 PE=4 SV=1[more]
BLAST of CmaCh02G007840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128203|ref|XP_008464099.1|1.6e-0652.17PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G007840.1CmaCh02G007840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G007840CsaV3_6G016640Cucumber (Chinese Long) v3cmacucB0740
CmaCh02G007840CsaV3_7G009950Cucumber (Chinese Long) v3cmacucB0770
CmaCh02G007840Carg03333Silver-seed gourdcarcmaB0477
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G007840Wax gourdcmawgoB0725
CmaCh02G007840Wax gourdcmawgoB0756
CmaCh02G007840Cucurbita maxima (Rimu)cmacmaB228
CmaCh02G007840Cucurbita maxima (Rimu)cmacmaB468
CmaCh02G007840Cucurbita maxima (Rimu)cmacmaB500
CmaCh02G007840Cucurbita maxima (Rimu)cmacmaB501
CmaCh02G007840Cucumber (Gy14) v1cgycmaB0391
CmaCh02G007840Cucurbita moschata (Rifu)cmacmoB577
CmaCh02G007840Cucurbita moschata (Rifu)cmacmoB605
CmaCh02G007840Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G007840Cucurbita moschata (Rifu)cmacmoB624
CmaCh02G007840Wild cucumber (PI 183967)cmacpiB622
CmaCh02G007840Cucumber (Chinese Long) v2cmacuB617
CmaCh02G007840Melon (DHL92) v3.5.1cmameB547
CmaCh02G007840Watermelon (Charleston Gray)cmawcgB527
CmaCh02G007840Watermelon (97103) v1cmawmB583
CmaCh02G007840Cucurbita pepo (Zucchini)cmacpeB625
CmaCh02G007840Cucurbita pepo (Zucchini)cmacpeB636
CmaCh02G007840Cucurbita pepo (Zucchini)cmacpeB638
CmaCh02G007840Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G007840Cucurbita pepo (Zucchini)cmacpeB651
CmaCh02G007840Bottle gourd (USVL1VR-Ls)cmalsiB547
CmaCh02G007840Bottle gourd (USVL1VR-Ls)cmalsiB576
CmaCh02G007840Cucumber (Gy14) v2cgybcmaB122
CmaCh02G007840Cucumber (Gy14) v2cgybcmaB642
CmaCh02G007840Cucumber (Gy14) v2cgybcmaB808
CmaCh02G007840Melon (DHL92) v3.6.1cmamedB611
CmaCh02G007840Melon (DHL92) v3.6.1cmamedB625
CmaCh02G007840Silver-seed gourdcarcmaB0113
CmaCh02G007840Silver-seed gourdcarcmaB0208
CmaCh02G007840Silver-seed gourdcarcmaB0533
CmaCh02G007840Silver-seed gourdcarcmaB1257
CmaCh02G007840Cucumber (Chinese Long) v3cmacucB0738
CmaCh02G007840Watermelon (97103) v2cmawmbB614
CmaCh02G007840Watermelon (97103) v2cmawmbB659