CsaV3_6G016070 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G016070
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein
Location	chr6 : 12032454 .. 12033016 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGGTGATTTCCGCAATCCCTCTTTTTATTTACATGTCCGAAAACCAATGCAAGATAGGATTGGAATGTGTCATTTGCTTGAGCTTGTTTGAAGAGAATGAGATTGGGAGGAGCTTGCCTAAGTGTAAGCATGTGTTTCACGTCGAGTGCATCGATATGTGGCTGAGTTCTCATTCTAATTGTCCGATTTGTAGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

mRNA sequence

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

Coding sequence (CDS)

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

Protein sequence

MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAASRSGGSHSSEFEKWNWQ

Homology

[Close]

BLAST of CsaV3_6G016070 vs. NCBI nr
Match: KGN47065.1 (hypothetical protein Csa_6G182680 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 9.2e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT
Sbjct: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107

[Close]

BLAST of CsaV3_6G016070 vs. NCBI nr
Match: XP_023007292.1 (RING-H2 finger protein ATL63-like [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 4.9e-35
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+Q SL+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQ-SLSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHT  P ARSPTKGL AS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHT--PPARSPTKGLEAS 102

[Close]

BLAST of CsaV3_6G016070 vs. NCBI nr
Match: XP_022947659.1 (RING-H2 finger protein ATL63-like [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 4.1e-34
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+Q SL+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQ-SLSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           QARHQ RSSIAVSQVLGQPRLHHFHSISFDHT  P ARSPTKGL AS
Sbjct: 61  QARHQGRSSIAVSQVLGQPRLHHFHSISFDHT--PPARSPTKGLDAS 102

[Close]

BLAST of CsaV3_6G016070 vs. NCBI nr
Match: XP_022148336.1 (RING-H2 finger protein ATL63-like [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQ SL+ PSFDPL  H F+SI+SYNGSV MLA LISL LVTIFV+LLHIYA+WFL 
Sbjct: 53  MFNSSQ-SLSLPSFDPL-SHPFRSILSYNGSV-MLAGLISLLLVTIFVVLLHIYAKWFLA 112

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           QARHQR +SI V+QVLGQPRLHHFHSISFDH++ P   SPTKGL AS
Sbjct: 113 QARHQRGNSITVTQVLGQPRLHHFHSISFDHSSSPTG-SPTKGLDAS 155

[Close]

BLAST of CsaV3_6G016070 vs. NCBI nr
Match: XP_023533073.1 (RING-H2 finger protein ATL63-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-27
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 24  SIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVSQVLGQPRLHH 83
           S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+QARHQRRSSIAVSQVLGQPRLHH
Sbjct: 41  SLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLSQARHQRRSSIAVSQVLGQPRLHH 100

Query: 84  FHSISFDHTTPPAARSPTKGLAAS 108
           FHSISFDHT  P A SPTKGL AS
Sbjct: 101 FHSISFDHT--PPAHSPTKGLDAS 121

[Close]

BLAST of CsaV3_6G016070 vs. TrEMBL
Match: tr|A0A0A0KBL6|A0A0A0KBL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182680 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.1e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT
Sbjct: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107

[Close]

BLAST of CsaV3_6G016070 vs. TrEMBL
Match: tr|D7SJU6|D7SJU6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g06930 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 6   QSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQ 65
           +SS++ P     F    KS+ SYNG+V MLAA++SL LV +FVL+LHIYA+WFL  ARH+
Sbjct: 7   ESSISSP-----FTDFMKSVFSYNGNV-MLAAIVSLLLVILFVLVLHIYAKWFLAHARHR 66

Query: 66  RRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 108
           RRSS++VS VL   R HHFH+ +F+ T    + SPTKGL +S
Sbjct: 67  RRSSVSVSHVLRPTRFHHFHTFTFETT---LSGSPTKGLDSS 99

[Close]

BLAST of CsaV3_6G016070 vs. TrEMBL
Match: tr|A0A2R6P6C5|A0A2R6P6C5_ACTCH (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc31825 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 24  SIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVSQVLGQPRLHH 83
           +I SYNG+VL LAA++SL LV +FVLLLH+YA+WFL+QARH+RR S++VS VLG  R HH
Sbjct: 17  TIFSYNGNVL-LAAIVSLLLVILFVLLLHVYAKWFLSQARHRRRRSVSVSHVLGPSRFHH 76

Query: 84  FHSISFDHTTPPAARSPTKGLAAS 108
           F+++SFD      + SPTKGL AS
Sbjct: 77  FNTLSFD---TAFSGSPTKGLEAS 96

[Close]

BLAST of CsaV3_6G016070 vs. TrEMBL
Match: tr|A0A2R6QJC0|A0A2R6QJC0_ACTCH (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16527 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.5e-16
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 24  SIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVSQVLGQPRLHH 83
           +I SYNG++L LAA++SL LV +FVLLLH+Y +WFL+QARH+RR S++VS VLG  R HH
Sbjct: 21  TIFSYNGNIL-LAAIVSLLLVILFVLLLHVYVKWFLSQARHRRRRSVSVSHVLGPARFHH 80

Query: 84  FHSISFDHTTPPAARSPTKGLAAS 108
           F++++FD      + SPTKGL AS
Sbjct: 81  FNTLAFD---TAFSSSPTKGLEAS 100

[Close]

BLAST of CsaV3_6G016070 vs. TrEMBL
Match: tr|A0A2P6QK58|A0A2P6QK58_ROSCH (Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0070411 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.8e-16
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 20  HAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVS-QVLGQ 79
           H F +I SYNG+V MLAAL+SL LV +FVLLLH+YA+WFL QA H+RR S+AVS +VLG 
Sbjct: 23  HLFDTIFSYNGNV-MLAALVSLLLVILFVLLLHVYAKWFLAQAHHRRRGSMAVSRRVLGP 82

Query: 80  PRLHHFHSISFDHTTPPAARSPTKGLAAS 108
            R  HFH+ +FD TT     +  KGL +S
Sbjct: 83  NRFQHFHTFTFDLTTNNLTTNTPKGLDSS 110

The following BLAST results are available for this feature:

BLAST of CsaV3_6G016070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47065.1	9.2e-50	100.00	hypothetical protein Csa_6G182680 [Cucumis sativus]	[more]
XP_023007292.1	4.9e-35	84.11	RING-H2 finger protein ATL63-like [Cucurbita maxima]	[more]
XP_022947659.1	4.1e-34	83.18	RING-H2 finger protein ATL63-like [Cucurbita moschata]	[more]
XP_022148336.1	2.5e-31	76.64	RING-H2 finger protein ATL63-like [Momordica charantia]	[more]
XP_023533073.1	1.7e-27	86.90	RING-H2 finger protein ATL63-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G016070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G016070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G016070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBL6\|A0A0A0KBL6_CUCSA	6.1e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182680 PE=4 SV=1	[more]
tr\|D7SJU6\|D7SJU6_VITVI	1.2e-16	53.92	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g06930 PE=4 SV=...	[more]
tr\|A0A2R6P6C5\|A0A2R6P6C5_ACTCH	1.2e-16	61.90	RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00...	[more]
tr\|A0A2R6QJC0\|A0A2R6QJC0_ACTCH	7.5e-16	58.33	RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00...	[more]
tr\|A0A2P6QK58\|A0A2P6QK58_ROSCH	9.8e-16	58.43	Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006002	fructose 6-phosphate metabolic process
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0043609	regulation of carbon utilization
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0006003	fructose 2,6-bisphosphate metabolic process
biological_process	GO:0042732	D-xylose metabolic process
biological_process	GO:0046835	carbohydrate phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005768	endosome
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003873	6-phosphofructo-2-kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:2001070	starch binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G016070.1	CsaV3_6G016070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G016070	Cucsa.139340	Cucumber (Gy14) v1	cgycucB209
CsaV3_6G016070	CmaCh02G007360	Cucurbita maxima (Rimu)	cmacucB0740
CsaV3_6G016070	CmoCh02G007410	Cucurbita moschata (Rifu)	cmocucB0729
CsaV3_6G016070	Cla013373	Watermelon (97103) v1	cucwmB536
CsaV3_6G016070	MELO3C026831	Melon (DHL92) v3.5.1	cucmeB425
CsaV3_6G016070	ClCG02G019440	Watermelon (Charleston Gray)	cucwcgB457
CsaV3_6G016070	Lsi10G014440	Bottle gourd (USVL1VR-Ls)	cuclsiB438
CsaV3_6G016070	MELO3C026831.2	Melon (DHL92) v3.6.1	cucmedB436
CsaV3_6G016070	Cla97C02G045430	Watermelon (97103) v2	cucwmbB445
CsaV3_6G016070	Bhi10G000644	Wax gourd	cucwgoB626

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G016070	Wax gourd	cucwgoB661
CsaV3_6G016070	Cucumber (Chinese Long) v3	cuccucB205
CsaV3_6G016070	Silver-seed gourd	carcucB0374
CsaV3_6G016070	Silver-seed gourd	carcucB0550
CsaV3_6G016070	Cucumber (Gy14) v2	cgybcucB244
CsaV3_6G016070	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G016070	Cucurbita maxima (Rimu)	cmacucB0665
CsaV3_6G016070	Cucurbita moschata (Rifu)	cmocucB0650
CsaV3_6G016070	Cucurbita pepo (Zucchini)	cpecucB0359
CsaV3_6G016070	Cucurbita pepo (Zucchini)	cpecucB0565
CsaV3_6G016070	Cucurbita pepo (Zucchini)	cpecucB0566
CsaV3_6G016070	Cucurbita pepo (Zucchini)	cpecucB0933
CsaV3_6G016070	Wild cucumber (PI 183967)	cpicucB308
CsaV3_6G016070	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G016070	Watermelon (Charleston Gray)	cucwcgB512
CsaV3_6G016070	Watermelon (97103) v1	cucwmB515
CsaV3_6G016070	Watermelon (97103) v2	cucwmbB502