CsaV3_6G012440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G012440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 8568399 .. 8568791 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATCTTACAAAATTCCTCATCAGACCATTATACTACTAGTACTAAGAGTCCCTCCTTCTCGACACCTAGTGCGATAAGACTACAAGAACAAGGAAAGCGGAAGATGATGGAGAAGGCCGAGGTAGAAAATATGGGGAAAAAAATAATATGTAGGGAGAAGGCAGAAGAAAGTGAAAAGATATACAGGAATAAAAGATTATGTAACAAGAAGAGGAAAAGAAGAAGAAAGAACAGGCGAAACAGCCAAGCTAGGAAGAAAGATATTGAGCTTTCAATGGAAAGCACTTCTTCACCTAATGTTGATTTTACAAAATTAGCAACAAGGACCCCCGCAAGATCTGCCAAAGAAATTTGGGCCCTTAGAAGAAGAAGCGAAGAAAGAGAGTGA

mRNA sequence

ATGCTCATCTTACAAAATTCCTCATCAGACCATTATACTACTAGTACTAAGAGTCCCTCCTTCTCGACACCTAGTGCGATAAGACTACAAGAACAAGGAAAGCGGAAGATGATGGAGAAGGCCGAGGTAGAAAATATGGGGAAAAAAATAATATGTAGGGAGAAGGCAGAAGAAAGTGAAAAGATATACAGGAATAAAAGATTATGTAACAAGAAGAGGAAAAGAAGAAGAAAGAACAGGCGAAACAGCCAAGCTAGGAAGAAAGATATTGAGCTTTCAATGGAAAGCACTTCTTCACCTAATGTTGATTTTACAAAATTAGCAACAAGGACCCCCGCAAGATCTGCCAAAGAAATTTGGGCCCTTAGAAGAAGAAGCGAAGAAAGAGAGTGA

Coding sequence (CDS)

ATGCTCATCTTACAAAATTCCTCATCAGACCATTATACTACTAGTACTAAGAGTCCCTCCTTCTCGACACCTAGTGCGATAAGACTACAAGAACAAGGAAAGCGGAAGATGATGGAGAAGGCCGAGGTAGAAAATATGGGGAAAAAAATAATATGTAGGGAGAAGGCAGAAGAAAGTGAAAAGATATACAGGAATAAAAGATTATGTAACAAGAAGAGGAAAAGAAGAAGAAAGAACAGGCGAAACAGCCAAGCTAGGAAGAAAGATATTGAGCTTTCAATGGAAAGCACTTCTTCACCTAATGTTGATTTTACAAAATTAGCAACAAGGACCCCCGCAAGATCTGCCAAAGAAATTTGGGCCCTTAGAAGAAGAAGCGAAGAAAGAGAGTGA

Protein sequence

MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESEKIYRNKRLCNKKRKRRRKNRRNSQARKKDIELSMESTSSPNVDFTKLATRTPARSAKEIWALRRRSEERE
Homology
[Close]
BLAST of CsaV3_6G012440 vs. NCBI nr
Match: KGN46686.1 (hypothetical protein Csa_6G124010 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 3.3e-50
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE 60
           MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE
Sbjct: 1   MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE 60

Query: 61  KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW 120
           KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW
Sbjct: 61  KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW 120

Query: 121 ALRRRSEERE 131
           ALRRRSEERE
Sbjct: 121 ALRRRSEERE 130

[Close]
BLAST of CsaV3_6G012440 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 0 

Query: 38  MEKAEVENMGKKIICREKAEESEKIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMEST 97
           ME AEV+NMG K   +E+A+ESEKIY ++RLCN                 +D+E+  +ST
Sbjct: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60

Query: 98  SSPNVDFTKLATRTPARSAKEIWALRRRSEERE 131
           SSP VDFT LATRTP R  K I  LRRRS+ RE
Sbjct: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGRE 93

[Close]
BLAST of CsaV3_6G012440 vs. TrEMBL
Match: tr|A0A0A0KG13|A0A0A0KG13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.2e-50
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE 60
           MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE
Sbjct: 1   MLILQNSSSDHYTTSTKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESE 60

Query: 61  KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW 120
           KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW
Sbjct: 61  KIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIW 120

Query: 121 ALRRRSEERE 131
           ALRRRSEERE
Sbjct: 121 ALRRRSEERE 130

[Close]
BLAST of CsaV3_6G012440 vs. TrEMBL
Match: tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 0 

Query: 38  MEKAEVENMGKKIICREKAEESEKIYRNKRLCNXXXXXXXXXXXXXXXXXKDIELSMEST 97
           ME AEV+NMG K   +E+A+ESEKIY ++RLCN                 +D+E+  +ST
Sbjct: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60

Query: 98  SSPNVDFTKLATRTPARSAKEIWALRRRSEERE 131
           SSP VDFT LATRTP R  K I  LRRRS+ RE
Sbjct: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGRE 93

[Close]
BLAST of CsaV3_6G012440 vs. TrEMBL
Match: tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.1e-04
Identity = 42/116 (36.21%), Postives = 52/116 (44.83%), Query Frame = 0 

Query: 15  STKSPSFSTPSAIRLQEQGKRKMMEKAEVENMGKKIICREKAEESEKIYRNKRLCNXXXX 74
           S K   FSTP AIR Q+  K + MEKA  E                              
Sbjct: 2   SNKHSLFSTPIAIRFQKHKKGERMEKARKE------------------------------ 61

Query: 75  XXXXXXXXXXXXXKDIELSMESTSSPNVDFTKLATRTPARSAKEIWALRRRSEERE 131
                         D+EL ++STSSP+ DFT+LATRTP RSAK I  L +RS+ +E
Sbjct: 62  --------------DLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKE 73

The following BLAST results are available for this feature:
BLAST of CsaV3_6G012440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46686.13.3e-50100.00hypothetical protein Csa_6G124010 [Cucumis sativus][more]
KGN57939.13.6e-1251.61hypothetical protein Csa_3G399460 [Cucumis sativus][more]
BLAST of CsaV3_6G012440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G012440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G012440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KG13|A0A0A0KG13_CUCSA2.2e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1[more]
tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA2.4e-1251.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1[more]
tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA9.1e-0436.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G012440.1CsaV3_6G012440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..102

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G012440Silver-seed gourdcarcucB0028
CsaV3_6G012440Silver-seed gourdcarcucB0372
CsaV3_6G012440Cucumber (Gy14) v2cgybcucB298
CsaV3_6G012440Cucumber (Gy14) v1cgycucB159
CsaV3_6G012440Cucurbita maxima (Rimu)cmacucB0764
CsaV3_6G012440Cucurbita moschata (Rifu)cmocucB0665
CsaV3_6G012440Cucurbita moschata (Rifu)cmocucB0747
CsaV3_6G012440Cucurbita pepo (Zucchini)cpecucB0355
CsaV3_6G012440Cucurbita pepo (Zucchini)cpecucB0928
CsaV3_6G012440Wild cucumber (PI 183967)cpicucB364
CsaV3_6G012440Bottle gourd (USVL1VR-Ls)cuclsiB432
CsaV3_6G012440Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G012440Melon (DHL92) v3.5.1cucmeB453
CsaV3_6G012440Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G012440Melon (DHL92) v3.6.1cucmedB444
CsaV3_6G012440Watermelon (Charleston Gray)cucwcgB466
CsaV3_6G012440Watermelon (Charleston Gray)cucwcgB475
CsaV3_6G012440Watermelon (97103) v1cucwmB543
CsaV3_6G012440Watermelon (97103) v2cucwmbB453
CsaV3_6G012440Watermelon (97103) v2cucwmbB464
CsaV3_6G012440Wax gourdcucwgoB621
CsaV3_6G012440Wax gourdcucwgoB632
CsaV3_6G012440Wax gourdcucwgoB639