CsaV3_6G009130 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009130
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 7349369 .. 7349659 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

mRNA sequence

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

Coding sequence (CDS)

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

Protein sequence

MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Homology
[Close]
BLAST of CsaV3_6G009130 vs. NCBI nr
Match: KGN46563.1 (hypothetical protein Csa_6G108610 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

[Close]
BLAST of CsaV3_6G009130 vs. NCBI nr
Match: XP_008458669.1 (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 4.5e-36
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMTIEAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEV
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEV 400

[Close]
BLAST of CsaV3_6G009130 vs. NCBI nr
Match: XP_023521953.1 (uncharacterized protein LOC111785802 [Cucurbita pepo subsp. pepo] >XP_023544074.1 uncharacterized protein LOC111803768 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 16  AMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDS 75
           A N S + NT+  K  YE  ES  WSSTV  KL    TI+ GIP I +  I +S + S  
Sbjct: 323 ASNNSSKENTIDMKLRYEISESNTWSSTVSAKLGVQTTIQTGIPLIAEGKIEMSAEFSGE 382

Query: 76  YTWGQTNKKSTPKTSSYSLEV 97
           YTWG+T  KS+   + Y++ V
Sbjct: 383 YTWGKTKSKSSEIETVYTVTV 403

[Close]
BLAST of CsaV3_6G009130 vs. NCBI nr
Match: XP_023543607.1 (natterin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 16 AMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDS 75
          A N S + NT+  K  YE  ES  WSSTV  KL    TI+ GIP I +  I +S + S  
Sbjct: 6  ASNNSSKENTIDMKLRYEISESNTWSSTVSAKLGVQTTIQTGIPLIAEGKIEMSAEFSGE 65

Query: 76 YTWGQTNKKSTPKTSSYSLEV 97
          YTWG+T  KS+   + Y++ V
Sbjct: 66 YTWGKTKSKSSEIETVYTVTV 86

[Close]
BLAST of CsaV3_6G009130 vs. NCBI nr
Match: XP_008458670.1 (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSY 93
             I +SG+IS SY+WG+T  K T K SSY
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSY 395

[Close]
BLAST of CsaV3_6G009130 vs. TrEMBL
Match: tr|A0A0A0KAR2|A0A0A0KAR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108610 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

[Close]
BLAST of CsaV3_6G009130 vs. TrEMBL
Match: tr|A0A1S3C8I1|A0A1S3C8I1_CUCME (uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-36
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMTIEAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEV
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEV 400

[Close]
BLAST of CsaV3_6G009130 vs. TrEMBL
Match: tr|A0A1S3C8E4|A0A1S3C8E4_CUCME (uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-09
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSY 93
             I +SG+IS SY+WG+T  K T K SSY
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSY 395

[Close]
BLAST of CsaV3_6G009130 vs. TrEMBL
Match: tr|F6HZZ7|F6HZZ7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-09
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y +RV  +    A+N + E++T + K SY E +S+ W  +V +KL   MT+E+G+PFI  
Sbjct: 312 YDQRVIVMTTGEAINMTQELHTQQVKLSYTETKSRTWKGSVSLKLGVKMTMESGVPFIAD 371

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
             + IS + S +Y WG+T   +T   + Y++ V
Sbjct: 372 GKLEISSEFSGTYEWGETESVTTAMETVYNVTV 404

[Close]
BLAST of CsaV3_6G009130 vs. TrEMBL
Match: tr|F6HZZ6|F6HZZ6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 0 

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y + V  +    A+N + E +T + K SY E +S  W  +V +KL   +T+E+G+PFI  
Sbjct: 312 YDQSVIVMTTAEAINRTHEPHTQQVKLSYTETKSSTWKGSVSLKLGVKITMESGVPFIAN 371

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
             + IS + S +Y WG+T   +T   + Y++ V
Sbjct: 372 GKLEISSEFSGAYEWGETESVTTAMETMYNVTV 404

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009130 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46563.11.7e-46100.00hypothetical protein Csa_6G108610 [Cucumis sativus][more]
XP_008458669.14.5e-3683.87PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo][more]
XP_023521953.16.2e-0943.21uncharacterized protein LOC111785802 [Cucurbita pepo subsp. pepo] >XP_023544074.... [more]
XP_023543607.16.2e-0943.21natterin-1-like [Cucurbita pepo subsp. pepo][more]
XP_008458670.11.1e-0837.08PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo][more]
BLAST of CsaV3_6G009130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAR2|A0A0A0KAR2_CUCSA1.1e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108610 PE=4 SV=1[more]
tr|A0A1S3C8I1|A0A1S3C8I1_CUCME3.0e-3683.87uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=... [more]
tr|A0A1S3C8E4|A0A1S3C8E4_CUCME7.0e-0937.08uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=... [more]
tr|F6HZZ7|F6HZZ7_VITVI9.1e-0935.48Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06110 PE=4 SV=... [more]
tr|F6HZZ6|F6HZZ6_VITVI1.7e-0733.33Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06090 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009405 pathogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009130.1CsaV3_6G009130.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.170.15.10coord: 3..96
e-value: 1.7E-18
score: 68.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..96
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 6..95
NoneNo IPR availableSUPERFAMILYSSF56973Aerolisin/ETX pore-forming domaincoord: 16..96

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G009130CSPI06G08760Wild cucumber (PI 183967)cpicucB364
CsaV3_6G009130CsGy6G008860Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009130Cla97C06G112400Watermelon (97103) v2cucwmbB487
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009130Silver-seed gourdcarcucB0595
CsaV3_6G009130Silver-seed gourdcarcucB0638
CsaV3_6G009130Cucumber (Gy14) v1cgycucB159
CsaV3_6G009130Cucurbita maxima (Rimu)cmacucB0451
CsaV3_6G009130Cucurbita maxima (Rimu)cmacucB1069
CsaV3_6G009130Cucurbita moschata (Rifu)cmocucB0444
CsaV3_6G009130Cucurbita moschata (Rifu)cmocucB1052
CsaV3_6G009130Cucurbita pepo (Zucchini)cpecucB0176
CsaV3_6G009130Cucurbita pepo (Zucchini)cpecucB0410
CsaV3_6G009130Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G009130Melon (DHL92) v3.5.1cucmeB446
CsaV3_6G009130Melon (DHL92) v3.6.1cucmedB438
CsaV3_6G009130Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G009130Watermelon (97103) v1cucwmB570
CsaV3_6G009130Wax gourdcucwgoB562