CSPI06G08760 (gene) Wild cucumber (PI 183967)

NameCSPI06G08760
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPore-forming toxin-like protein Hfr-2
LocationChr6 : 7366257 .. 7366751 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAACAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTACAGCCAAGAACTTCAGTCAAAGTGAATGCCATGGTAACCAAAGGATATTGTGATGTTCCATTCTCATACACTCAACGTGATGTTCTTGTCAATGGACAAACAGTACTTACAGATCATGATGATGGTTTATTCACAGGACTTAGTTGCTACAACTTCCACTATCAATCTGAAAATGTTAAATCCTTATCCACTTTACCATCTAATTAA

mRNA sequence

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAACAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTACAGCCAAGAACTTCAGTCAAAGTGAATGCCATGGTAACCAAAGGATATTGTGATGTTCCATTCTCATACACTCAACGTGATGTTCTTGTCAATGGACAAACAGTACTTACAGATCATGATGATGGTTTATTCACAGGACTTAGTTGCTACAACTTCCACTATCAATCTGAAAATGTTAAATCCTTATCCACTTTACCATCTAATTAA

Coding sequence (CDS)

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAACAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTACAGCCAAGAACTTCAGTCAAAGTGAATGCCATGGTAACCAAAGGATATTGTGATGTTCCATTCTCATACACTCAACGTGATGTTCTTGTCAATGGACAAACAGTACTTACAGATCATGATGATGGTTTATTCACAGGACTTAGTTGCTACAACTTCCACTATCAATCTGAAAATGTTAAATCCTTATCCACTTTACCATCTAATTAA
BLAST of CSPI06G08760 vs. TrEMBL
Match: A0A0A0KAR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108610 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1

Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMT EAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

BLAST of CSPI06G08760 vs. TrEMBL
Match: D7U3H9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 61/155 (39.35%), Postives = 96/155 (61.94%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y +RV  +   GA+N + E +T + K SY E  S+ W  +V +K    +T E+G+PFI  
Sbjct: 312 YDQRVIVMTTGGAINMTQEPHTQQVKLSYTETNSRTWKGSVSLKSGVKITIESGVPFIAD 371

Query: 64  TNIVISGDISDS--YTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQ 123
             + +S + S +  Y WG+T   +T K + YS+ V  RT V ++ + T+G CDVPFSYTQ
Sbjct: 372 GKLEVSSEFSGTGTYEWGETESLTTAKETVYSVTVPARTRVTISMIATQGSCDVPFSYTQ 431

Query: 124 RDVLVNGQTVLTDHDDGLFTGLSCYNFHYQSENVK 157
           RD L +G+ V+ + DDG++ G++C+N  YQ++  K
Sbjct: 432 RDTLTDGKNVVYNMDDGVYVGVNCFNVEYQTKEEK 466

BLAST of CSPI06G08760 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.8e-26
Identity = 59/153 (38.56%), Postives = 94/153 (61.44%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y +RV  +    A+N + E++T + K SY E +S+ W  +V +KL   MT E+G+PFI  
Sbjct: 312 YDQRVIVMTTGEAINMTQELHTQQVKLSYTETKSRTWKGSVSLKLGVKMTMESGVPFIAD 371

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRD 123
             + IS + S +Y WG+T   +T   + Y++ V   T V V+ + T+G CDVPFSYTQ D
Sbjct: 372 GKLEISSEFSGTYEWGETESVTTAMETVYNVTVPAMTKVTVSMIATQGSCDVPFSYTQHD 431

Query: 124 VLVNGQTVLTDHDDGLFTGLSCYNFHYQSENVK 157
            L +G+ V+ + DDG++ G++C+N  Y ++  K
Sbjct: 432 TLTDGKNVVYNMDDGVYVGVNCFNVKYHTKEEK 464

BLAST of CSPI06G08760 vs. TrEMBL
Match: A0A0A0KD71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086130 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.8e-26
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 1

Query: 17  MNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMKTNIVISGDISDSY 76
           +N + E    + K  YE+ +S  W+++VGMKL   M+ E+G P I    I IS +  + Y
Sbjct: 336 VNKNSEPELQRLKLQYEDTKSSTWTNSVGMKLGMKMSIESGCPEISSQEIEISAEFKEEY 395

Query: 77  TWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRDVLVNGQTVLTDHD 136
           TWG+T +  + +   + + V P T V    + TKG+CD+P+SYTQRDVL NG+  +   D
Sbjct: 396 TWGETKETKSTREVEHQVTVPPYTKVIAKVLATKGFCDIPYSYTQRDVLTNGKVEIQQFD 455

Query: 137 DGLFTGLSCYNFHYQSE 154
           DG++TG +CYN+ + +E
Sbjct: 456 DGIYTGSNCYNYTFSTE 472

BLAST of CSPI06G08760 vs. TrEMBL
Match: A0A0A0KEW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-25
Identity = 60/150 (40.00%), Postives = 95/150 (63.33%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y E+V  +  + A+N S +   +     Y EE+S+ W S++ + +    + +AGIP I+ 
Sbjct: 310 YDEQVLTMATEEAVNSSSKETVMAVSLRYLEEKSKTWESSLTVGVGIETSIKAGIPEILD 369

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRD 123
           T I +S +   SYTWG+T  +S   T++Y++ V P T +KV  + TK  CD+PFSYTQRD
Sbjct: 370 TEIKVSYNFEASYTWGETISESREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRD 429

Query: 124 VLVNGQTVLTDHDDGLFTGLSCYNFHYQSE 154
           +L NG+ V T++DDGL+TG+  + F YQ++
Sbjct: 430 LLRNGRRVETEYDDGLYTGVYTFKFDYQNK 459

BLAST of CSPI06G08760 vs. NCBI nr
Match: gi|659117567|ref|XP_008458669.1| (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMT EAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRD 123
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEVQPRTSVKV+AM+TKGYCDVPFSYTQRD
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEVQPRTSVKVSAMLTKGYCDVPFSYTQRD 427

Query: 124 VLVNGQTVLTDHDDGLFTGLSCYNFHYQSENVKSLSTLPSN 165
           +LV+GQT  T+HDDGLFTG +CYNFHYQSE+V SLS   SN
Sbjct: 428 ILVDGQTRTTEHDDGLFTGFNCYNFHYQSEDVTSLSAPSSN 468

BLAST of CSPI06G08760 vs. NCBI nr
Match: gi|700191359|gb|KGN46563.1| (hypothetical protein Csa_6G108610 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.6e-45
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1

Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMT EAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

BLAST of CSPI06G08760 vs. NCBI nr
Match: gi|659117569|ref|XP_008458670.1| (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 7.2e-30
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRD 123
             I +SG+IS SY+WG+T  K T K SSY   V P+T VKV+ + +KG CD+PFSY QRD
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSYQTIVPPKTRVKVSLIASKGKCDIPFSYMQRD 426

Query: 124 VLVNGQTVLTDHDDGLFTGLSCYNFHYQSENVK 157
           V  +G   + +HDDG++TGL+CY+++Y+ E  K
Sbjct: 427 VYSDGTVKIEEHDDGIYTGLNCYSYNYEVEEQK 459

BLAST of CSPI06G08760 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y +RV ++    A+N + E NT+  + SY++  S  W+S+V MKL  S   + G+P I K
Sbjct: 317 YSQRVVSMATGDAVNRTQEENTIDLRLSYKDSRSSTWNSSVSMKLGLSTKVQTGVPLIAK 376

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQRD 123
             I IS + +  + WG+TN   +   + Y + V P + VKV+ M T+G CDVPFSYTQRD
Sbjct: 377 GEIEISTEFATEFQWGETNTSESEVETVYRVVVPPMSMVKVSLMATRGSCDVPFSYTQRD 436

Query: 124 VLVNGQTVLTDHDDGLFTGLSCYNFHYQS 153
            L+NG TV    DDG++TG++ YNF Y++
Sbjct: 437 TLINGTTVTQTMDDGVYTGVNSYNFKYET 465

BLAST of CSPI06G08760 vs. NCBI nr
Match: gi|225465423|ref|XP_002264775.1| (PREDICTED: uncharacterized protein LOC100251726 [Vitis vinifera])

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 61/155 (39.35%), Postives = 96/155 (61.94%), Query Frame = 1

Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTTEAGIPFIMK 63
           Y +RV  +   GA+N + E +T + K SY E  S+ W  +V +K    +T E+G+PFI  
Sbjct: 312 YDQRVIVMTTGGAINMTQEPHTQQVKLSYTETNSRTWKGSVSLKSGVKITIESGVPFIAD 371

Query: 64  TNIVISGDISDS--YTWGQTNKKSTPKTSSYSLEVQPRTSVKVNAMVTKGYCDVPFSYTQ 123
             + +S + S +  Y WG+T   +T K + YS+ V  RT V ++ + T+G CDVPFSYTQ
Sbjct: 372 GKLEVSSEFSGTGTYEWGETESLTTAKETVYSVTVPARTRVTISMIATQGSCDVPFSYTQ 431

Query: 124 RDVLVNGQTVLTDHDDGLFTGLSCYNFHYQSENVK 157
           RD L +G+ V+ + DDG++ G++C+N  YQ++  K
Sbjct: 432 RDTLTDGKNVVYNMDDGVYVGVNCFNVEYQTKEEK 466

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAR2_CUCSA1.1e-4598.96Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108610 PE=4 SV=1[more]
D7U3H9_VITVI2.0e-2639.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=... [more]
F6HZZ7_VITVI5.8e-2638.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=... [more]
A0A0A0KD71_CUCSA9.8e-2639.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086130 PE=4 SV=1[more]
A0A0A0KEW1_CUCSA1.7e-2540.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659117567|ref|XP_008458669.1|1.2e-6981.37PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo][more]
gi|700191359|gb|KGN46563.1|1.6e-4598.96hypothetical protein Csa_6G108610 [Cucumis sativus][more]
gi|659117569|ref|XP_008458670.1|7.2e-3041.83PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo][more]
gi|645281008|ref|XP_008245436.1|2.3e-2842.28PREDICTED: uncharacterized protein LOC103343557 [Prunus mume][more]
gi|225465423|ref|XP_002264775.1|2.8e-2639.35PREDICTED: uncharacterized protein LOC100251726 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005830Aerolysn
IPR023307Aerolysin-like toxin, beta complex domain
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0009405pathogenesis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009405 pathogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G08760.1CSPI06G08760.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005830AerolysinPFAMPF01117Aerolysincoord: 18..120
score: 7.
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 16..155
score: 2.7
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 4..158
score: 1.5
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 16..151
score: 1.2