CsaV3_6G002370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G002370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontranscription elongation factor TFIIS
Locationchr6 : 1621766 .. 1624427 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTCTCAAAAGGAATTTGTTGGATTAAATCTGAAAAACGACGTCGTTACAGTATGAAGTAGAATTCAATCCAATTTACTGAAGAGTGAAGGTAAAAAGGACTAGGTGAAATACCTAAAAGCCCATTCCTATTCTTACGCAATCCGTGGATAAATAGGTAAAATCCAAAGGTGTTTTGAGTTTTGACCTGTTCTTTCGTTATAGGTTCTTACCATTATCCTGTATAACACGTGTTTCATCCTAGTCCGTCGGATCAAACTCCCCTCTTCCTTCCTTTACCCTATTTCCCTCATCCCCAAGACCTCTTTTCAATTTCCTTACTTCCTCCGCCGCCGTCTCTCTGCCGAAAAGGGGTTTTTCCGGACCTCATTCCGATTGATTTTCCCTTCTGCTGCTCTCCGTCTTCACTGCTTTAGTTCCTTTAGCGAGGGGTTTTTCTGTCGCCGACTCAGATCTCTGTAAGTGATACTCATTCGAATCGATATTTGGATGTCTTTTGATTCGTTACTTTTCCTTTGCTTGTTCATTGAGAAAAGAAGTTGATTCGATTTTGATTGCAAAACCTCCTTTTTGCGTTCATGCGTTTGTTTGTTTATATCTTTATGTTTTTTTTTTTTTTTTTGTTGTTGTGGTTGTTGGGATCTGATCGCTCTTTTCTTCGAATGTGGTGGATAGATAATATAAAAAATCCGAGTTGGCGGTGGTTCGATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTAGACTTGAGATTTGTTTCTTTTGTTGATGGTGGGGGGACAGTGAGAATGTAATTAGCAAGTTTATGAAATTATGCATGGTTTTTATTATGAATTTAGCTTAAATTCATCGTCTGCTTGCTTACGAATTGGTTTCATAACGAATTGAGTTCACTCGATTTCATACGTTGTTTATGTCGTTCACGTTCACGTAACAAAGTCATCTCATTTGTGATCCTTGTCAATTTCGGGGAGAGAATAATGGCAGGATTTTCCTAGTTAATTAGGCCCCATTTGAATTGACTTTTCAAGTGTTTATGAGCATTCTTTTTCAAGAGATACACTTATATAAAGACTTAAGAAATCAATCCATCAATAATCTTTTGTTTCATCTTTGTAATTGACATCACTTTTGCCTGTATTGATTGCTTATTTATATTGTTTTCTATAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGAGTCTATTTTGAGATGCTGAAAATGTTATTGTTTGGAACAATCTACTGAGCAATTAGTGTTATTTTGCCCTGACATTGGTTGCTGCAGTTTGTAATCTCGTTCCACATTGTTACATTTAGAACGTAGGAGCTTTTCTGTTGTAGGATGTCTTAAGTGCCAATTTATTAAGAAATTCAGTGTATAAACTTGTTTTATTTTTATTTTCTTTGGTATTTTTATGAGTTTCATACAGTTACAAGGATCTCTTTAACTCAACGGTTCAACTAAATTGTTTGTTAAATTTGTCTAAGAGCATATACGAGAGATTCTGATTTTGACTGTAGTGGATTCCTTTATATTAATTGTTCATAATTCAGTGGCCCCACTTATCATATGAAATGAAGTAAACGTGTCATTGATA

mRNA sequence

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

Coding sequence (CDS)

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

Protein sequence

MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Homology
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BLAST of CsaV3_6G002370 vs. NCBI nr
Match: XP_004138392.1 (PREDICTED: transcription elongation factor S-II [Cucumis sativus] >KGN45841.1 hypothetical protein Csa_6G014610 [Cucumis sativus])

HSP 1 Score: 608.2 bits (1567), Expect = 1.8e-170
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV
Sbjct: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

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BLAST of CsaV3_6G002370 vs. NCBI nr
Match: XP_008456781.1 (PREDICTED: transcription elongation factor TFIIS [Cucumis melo])

HSP 1 Score: 600.9 bits (1548), Expect = 2.9e-168
Identity = 342/369 (92.68%), Postives = 346/369 (93.77%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVSKVEQFD                  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           XXX   APPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIRVA+SV
Sbjct: 181 XXXGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

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BLAST of CsaV3_6G002370 vs. NCBI nr
Match: XP_022134049.1 (transcription elongation factor TFIIS [Momordica charantia] >XP_022134050.1 transcription elongation factor TFIIS [Momordica charantia])

HSP 1 Score: 568.9 bits (1465), Expect = 1.2e-158
Identity = 330/377 (87.53%), Postives = 340/377 (90.19%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ++ASDLIEMWKEIVIKETNKNKKNGN + K+SPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFD--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVSKVEQ D                        XXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASD 240
           XXXXXXXXX     APPKLTSMIKSKDAARDKIRELL EAFSKVPGEADE+ +DEVNASD
Sbjct: 181 XXXXXXXXXSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

Query: 241 PIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMS 300
           P+RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRR VL+G IKPER+INMS
Sbjct: 241 PVRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRNVLVGHIKPERLINMS 300

Query: 301 TADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360
           TA+MASDQRKRENEEI QKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP
Sbjct: 301 TAEMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360

Query: 361 MTTFVTCVNCNNHWKFC 370
           MTTFVTCVNCNNHWKFC
Sbjct: 361 MTTFVTCVNCNNHWKFC 377

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BLAST of CsaV3_6G002370 vs. NCBI nr
Match: XP_022938772.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 568.9 bits (1465), Expect = 1.2e-158
Identity = 320/375 (85.33%), Postives = 330/375 (88.00%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSKVEQFD------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVS+VEQFD                              XXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240
           XXXXXX      APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDPI
Sbjct: 181 XXXXXXPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 370
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

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BLAST of CsaV3_6G002370 vs. NCBI nr
Match: XP_023551413.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.2 bits (1463), Expect = 2.1e-158
Identity = 327/376 (86.97%), Postives = 338/376 (89.89%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIKETNKNKKNGN   K+SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSKVEQFD-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVS+VEQF+                       XXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSRVEQFNGNGVTSSAKFSRSESDISEKNSVXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDP 240
           XXXXXXX      APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDP
Sbjct: 181 XXXXXXXSSSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 241 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMST 300
           IRVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGL+KP+R+INMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLVKPDRLINMST 300

Query: 301 ADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360
           ADMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 361 TTFVTCVNCNNHWKFC 370
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

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BLAST of CsaV3_6G002370 vs. TAIR10
Match: AT2G38560.1 (transcript elongation factor IIS)

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-100
Identity = 230/378 (60.85%), Postives = 274/378 (72.49%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           VKV+K Q+  S K  +V + E  +   XXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEPDNKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKVS 180

Query: 181 XXXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNAS 240
                          APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VNAS
Sbjct: 181 KDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNAS 240

Query: 241 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM 300
           DP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I +
Sbjct: 241 DPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITL 300

Query: 301 STADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADE 360
           S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSADE
Sbjct: 301 SAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADE 360

Query: 361 PMTTFVTCVNCNNHWKFC 370
           PMTT+VTCVNC+NHWKFC
Sbjct: 361 PMTTYVTCVNCDNHWKFC 378

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BLAST of CsaV3_6G002370 vs. TAIR10
Match: AT2G42730.1 (F-box family protein)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-23
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 0 

Query: 189 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEEFMDEVNASDPIRVAVSVESVMFEN 248
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D E    V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 249 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEE 308
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 309 IAQKALF 315
           I + A F
Sbjct: 714 IKENARF 720

[Close]
BLAST of CsaV3_6G002370 vs. TAIR10
Match: AT4G18720.1 (Transcription factor IIS protein)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22
Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 189 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEEFMDEVNASDPIRVAVSVESVMFEN 248
           P   +M K+ D+ RDK+RE+L  + +KV  E  D E    V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 249 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMAS 299
            G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER++ M   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]
BLAST of CsaV3_6G002370 vs. TAIR10
Match: AT5G42325.1 (Transcription factor IIS protein)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-13
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0 

Query: 189 PKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDE--VNASDPIRVAVSVESVMFE 248
           P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 249 NWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENE 308
                         SI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 215

Query: 309 EIAQKALF 315
            I ++A F
Sbjct: 224 RIKERARF 215

[Close]
BLAST of CsaV3_6G002370 vs. TAIR10
Match: AT5G25520.2 (SPOC domain / Transcription elongation factor S-II protein)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-10
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 232 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM 291
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 292 STADMASDQ----RKRENEEIAQ 311
           +  ++AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

[Close]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match: sp|Q9ZVH8|RDO2_ARATH (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.0e-99
Identity = 230/378 (60.85%), Postives = 274/378 (72.49%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           VKV+K Q+  S K  +V + E  +   XXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEPDNKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKVS 180

Query: 181 XXXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNAS 240
                          APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VNAS
Sbjct: 181 KDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNAS 240

Query: 241 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM 300
           DP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I +
Sbjct: 241 DPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITL 300

Query: 301 STADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADE 360
           S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSADE
Sbjct: 301 SAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADE 360

Query: 361 PMTTFVTCVNCNNHWKFC 370
           PMTT+VTCVNC+NHWKFC
Sbjct: 361 PMTTYVTCVNCDNHWKFC 378

[Close]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match: sp|Q15560|TCEA2_HUMAN (Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-27
Identity = 96/342 (28.07%), Postives = 154/342 (45.03%), Query Frame = 0 

Query: 34  LDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPK-KKIQEHASDLIEMWKEIVIKETNKN 93
           +D LR+LK  P+T  +L ST+VG  +  L K    +++   A  LI+ WK+++     K 
Sbjct: 28  MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 87

Query: 94  KKNGN-----ASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDXXXXXXXXXX 153
           ++ G       SS+D+ +   PS +  ++         +     ++  F           
Sbjct: 88  RERGRGMPLPTSSRDASEAPDPSRKRPELP--------RAPSTPRITTF----------- 147

Query: 154 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRE 213
                                                   PP   +     DA R+K RE
Sbjct: 148 ----------------------------------------PPVPVTC----DAVRNKCRE 207

Query: 214 LLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLK 273
           +L  A      + D + +     +D  R++  +E  +F + G +    K + RS + NLK
Sbjct: 208 MLTAAL-----QTDHDHV--AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLK 267

Query: 274 DPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTD 333
           D KNPD RR VL G I P+++  M++ +MASD+ K   + + ++A+ + +        TD
Sbjct: 268 DAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTD 299

Query: 334 QFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 370
            F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 328 LFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299

[Close]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match: sp|P49373|TFS2_SCHPO (Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfs1 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-27
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 0 

Query: 234 IRVAVSVESVMFENWGGSTGAQ-KAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMS 293
           I  A  +++ +     G TG++ + + RS+  NLKD  NP  R  VL   I P+R+  M+
Sbjct: 157 IAKAKEIDAQVLARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMT 216

Query: 294 TADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 353
           +A++AS+ R++E+ ++ Q+ LF  +     KA TD F CG+C Q+K +YYQ+QTRSADEP
Sbjct: 217 SAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEP 276

Query: 354 MTTFVTCVNCNNHWKF 369
           MTTF  C  C N WKF
Sbjct: 277 MTTFCECTVCGNRWKF 292

[Close]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match: sp|P20232|TFS2_DROME (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-26
Identity = 66/171 (38.60%), Postives = 92/171 (53.80%), Query Frame = 0 

Query: 199 DAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAK 258
           DA R K RE+L  A     GE  E         +P  +A  +E  ++  +  +    K +
Sbjct: 151 DAVRIKCREMLATALK--IGEVPE------GCGEPEEMAAELEDAIYSEFNNTDMKYKNR 210

Query: 259 YRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCER 318
            RS + NLKDPKNP  R   + G +  +++  M+  +MASD+ K+  E+  ++A+ D + 
Sbjct: 211 IRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQL 270

Query: 319 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 370
                  TD  KC +C +R  TY QLQTRSADEPMTTFV C  C N WKFC
Sbjct: 271 ATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

[Close]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match: sp|P23193|TCEA1_HUMAN (Transcription elongation factor A protein 1 OS=Homo sapiens OX=9606 GN=TCEA1 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-26
Identity = 100/375 (26.67%), Postives = 163/375 (43.47%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME+E+V       K  D      N  GA     LD L++LK  P+T ++L ST++G  + 
Sbjct: 1   MEDEVVRF----AKKMDKMVQKKNAAGA-----LDLLKELKNIPMTLELLQSTRIGMSVN 60

Query: 61  HLTKH-PKKKIQEHASDLIEMWKEIV-----IKETNKNKKNGNASSKDSPKIGSPSAESV 120
            + K    +++   A  LI+ WK+++      K+ ++ KK    +S++SP+    S  S 
Sbjct: 61  AIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSG 120

Query: 121 KVEKFQKSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            V   +  ++ +   VS   +                                       
Sbjct: 121 NVSNRKDETNARDTYVSSFPR--------------------------------------- 180

Query: 181 XXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240
                       AP        + D+ R K RE+L  A         ++++     +D  
Sbjct: 181 ------------AP-------STSDSVRLKCREMLAAAL-----RTGDDYI--AIGADEE 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
            +   +E  +++    +    K + RS + NLKD KNP+ R+ VL G I P+    M+  
Sbjct: 241 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           +MASD+ K   + + ++A+ + +        TD F CG+C ++  TY Q+QTRSADEPMT
Sbjct: 301 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 301

Query: 361 TFVTCVNCNNHWKFC 370
           TFV C  C N WKFC
Sbjct: 361 TFVVCNECGNRWKFC 301

[Close]
BLAST of CsaV3_6G002370 vs. TrEMBL
Match: tr|A0A0A0KDH9|A0A0A0KDH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 1.2e-170
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV
Sbjct: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]
BLAST of CsaV3_6G002370 vs. TrEMBL
Match: tr|A0A1S3C448|A0A1S3C448_CUCME (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 1.9e-168
Identity = 342/369 (92.68%), Postives = 346/369 (93.77%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KSSSMKVERVSKVEQFD                  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           XXX   APPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIRVA+SV
Sbjct: 181 XXXGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]
BLAST of CsaV3_6G002370 vs. TrEMBL
Match: tr|M5X6N8|M5X6N8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G265300 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 6.5e-116
Identity = 268/381 (70.34%), Postives = 301/381 (79.00%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHP+KKIQ  +S LI+ WK IVIKE NK+ KNGN    DS K  SPSAES + EK Q
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 121 KSSSMKVERVSK------------VEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           K+S                     V+            XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KTSXXXXXXXXXXXXXXXXXXXXGVKPSSDKAYSSETVXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEV 240
           XXXXXXXXXXXXX     APPKLTSMIKS D ARD++R +L EA SKV  EADE F D V
Sbjct: 181 XXXXXXXXXXXXXALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADERFADYV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDPIRVAV++ESV+FE+WGGSTGAQKAKYRS++FNLKD KNPDFRRKVLLG I+ ER+
Sbjct: 241 NASDPIRVAVTLESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGDIEAERL 300

Query: 301 INMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
           ++MSTA+MASDQR+ EN+++ QKALF+CERGGAPKATTDQFKCGRCG RKTTYYQ+QTRS
Sbjct: 301 VDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 370
           ADEPMTT+VTCVNCNN WKFC
Sbjct: 361 ADEPMTTYVTCVNCNNRWKFC 379

[Close]
BLAST of CsaV3_6G002370 vs. TrEMBL
Match: tr|A0A2I4ER36|A0A2I4ER36_9ROSI (transcription elongation factor TFIIS-like OS=Juglans regia OX=51240 GN=LOC108991895 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.5e-115
Identity = 231/384 (60.16%), Postives = 268/384 (69.79%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAA AAA  S DGGAEE RCLDAL QLK FPVTY +LVSTQVGK LR
Sbjct: 1   MERELVELFEAAKKAAGAAA--SADGGAEEIRCLDALHQLKNFPVTYHLLVSTQVGKHLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEK-- 120
           HLT+HP+KKIQ  ASDLIE+WK+IVIKETNKN++N ++  KDS K+   + E+ K EK  
Sbjct: 61  HLTRHPRKKIQSFASDLIEIWKDIVIKETNKNRRNESSDDKDSVKVEMVNPETAKAEKDM 120

Query: 121 -----FQKSSSMKVER--------VSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                F K+ S+KV +        + KV + D                            
Sbjct: 121 KTSVRFSKAESIKVVKTERNGMPSLEKVSRTD--AVKTGRKVRSVDVGKIEKTDLAENDK 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFM 240
                                 PPKL SMIKS DA RDK+RELL EA S+V  EA+E+  
Sbjct: 181 LEKIIKEEKRASGVKKPLVCPGPPKLMSMIKSNDAMRDKVRELLHEALSRVSNEANEDIQ 240

Query: 241 DEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKP 300
           DEVNA DPIRVAVSVES++F+NWG S GAQKAKYRS+MFNLKD KNPDFRR+VLLG +KP
Sbjct: 241 DEVNACDPIRVAVSVESILFDNWGSSQGAQKAKYRSLMFNLKDAKNPDFRRRVLLGHVKP 300

Query: 301 ERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQ 360
           E ++NMSTA+MASD+R+ EN  I ++ALFDCERG  PK TTDQF+CGRCGQRK TYYQ+Q
Sbjct: 301 EWLVNMSTAEMASDKRQNENRLIEERALFDCERGAPPKETTDQFRCGRCGQRKCTYYQMQ 360

Query: 361 TRSADEPMTTFVTCVNCNNHWKFC 370
           TRSADEPMTT+VTCVNCNNHWKFC
Sbjct: 361 TRSADEPMTTYVTCVNCNNHWKFC 380

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BLAST of CsaV3_6G002370 vs. TrEMBL
Match: tr|F6HC30|F6HC30_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0067g03170 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 9.8e-112
Identity = 226/372 (60.75%), Postives = 258/372 (69.35%), Query Frame = 0 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME EL+ELFEA KKAADAAA  S    +EE RCLDAL+QLK FPVTYQ+LVSTQVGKRLR
Sbjct: 1   MEKELLELFEATKKAADAAAVNSG-APSEEERCLDALKQLKDFPVTYQVLVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVE--- 120
            LTKHP KKIQ  ASDLI++WK IVI+ET KNKKNG+   K+SPK  + + E+VK     
Sbjct: 61  TLTKHPTKKIQALASDLIDIWKNIVIEETTKNKKNGDLEDKESPKPVTANPENVKATPLL 120

Query: 121 KFQKSSSMKVERVSKVEQFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           K  K+ ++KVE+ +                                              
Sbjct: 121 KVSKAENIKVEKQTS--------------------------------------------G 180

Query: 181 XXXXXXXXXAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVA 240
                     PPKLTS+ K  DA RDK+RELL EA SKV GEADE+ MD VNA DPIRVA
Sbjct: 181 VKKPSHNIVGPPKLTSISKCNDALRDKVRELLSEALSKVVGEADEDIMDAVNACDPIRVA 240

Query: 241 VSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMA 300
           VSVESVMFE WG S+GA K KYRS+MFN+KD KNPD RRKVLLG + PER++ M   +MA
Sbjct: 241 VSVESVMFEKWGRSSGAHKLKYRSLMFNIKDAKNPDLRRKVLLGQVMPERLLEMGPEEMA 300

Query: 301 SDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 360
           SD+R+ EN++I +KALFDCE G APKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV
Sbjct: 301 SDRRQLENQQIKEKALFDCELGAAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 327

Query: 361 TCVNCNNHWKFC 370
           TCVNCNNHWKFC
Sbjct: 361 TCVNCNNHWKFC 327

The following BLAST results are available for this feature:
BLAST of CsaV3_6G002370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138392.11.8e-170100.00PREDICTED: transcription elongation factor S-II [Cucumis sativus] >KGN45841.1 hy... [more]
XP_008456781.12.9e-16892.68PREDICTED: transcription elongation factor TFIIS [Cucumis melo][more]
XP_022134049.11.2e-15887.53transcription elongation factor TFIIS [Momordica charantia] >XP_022134050.1 tran... [more]
XP_022938772.11.2e-15885.33transcription elongation factor TFIIS-like [Cucurbita moschata][more]
XP_023551413.12.1e-15886.97transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_6G002370 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38560.11.1e-10060.85transcript elongation factor IIS[more]
AT2G42730.14.1e-2347.24F-box family protein[more]
AT4G18720.12.0e-2252.25Transcription factor IIS protein[more]
AT5G42325.15.0e-1336.72Transcription factor IIS protein[more]
AT5G25520.28.9e-1039.76SPOC domain / Transcription elongation factor S-II protein[more]
BLAST of CsaV3_6G002370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZVH8|RDO2_ARATH2.0e-9960.85Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P... [more]
sp|Q15560|TCEA2_HUMAN1.2e-2728.07Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=... [more]
sp|P49373|TFS2_SCHPO4.5e-2743.38Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ... [more]
sp|P20232|TFS2_DROME1.3e-2638.60Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS... [more]
sp|P23193|TCEA1_HUMAN6.5e-2626.67Transcription elongation factor A protein 1 OS=Homo sapiens OX=9606 GN=TCEA1 PE=... [more]
BLAST of CsaV3_6G002370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDH9|A0A0A0KDH9_CUCSA1.2e-170100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1[more]
tr|A0A1S3C448|A0A1S3C448_CUCME1.9e-16892.68transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE... [more]
tr|M5X6N8|M5X6N8_PRUPE6.5e-11670.34Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G265300 PE=4 SV=1[more]
tr|A0A2I4ER36|A0A2I4ER36_9ROSI2.5e-11560.16transcription elongation factor TFIIS-like OS=Juglans regia OX=51240 GN=LOC10899... [more]
tr|F6HC30|F6HC30_VITVI9.8e-11260.75Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0067g03170 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035100TF_IIS-typ
IPR035441TFIIS/LEDGF_dom_sf
IPR036575TFIIS_cen_dom_sf
IPR017923TFIIS_N
IPR006289TFSII
IPR003617TFIIS/CRSP70_N_sub
IPR001222Znf_TFIIS
IPR003618TFIIS_cen_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003746 translation elongation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G002370.1CsaV3_6G002370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 199..307
e-value: 8.3E-36
score: 135.0
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 199..315
e-value: 6.6E-31
score: 107.0
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 201..324
score: 33.413
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 329..368
e-value: 9.7E-24
score: 94.9
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 329..367
e-value: 1.1E-19
score: 69.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 331..366
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 327..367
score: 14.637
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 8..87
e-value: 2.2E-24
score: 97.0
IPR006289Transcription elongation factor, TFIISTIGRFAMTIGR01385TIGR01385coord: 12..369
e-value: 5.5E-99
score: 329.6
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 310..369
e-value: 1.2E-24
score: 87.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..107
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 9..367
NoneNo IPR availablePANTHERPTHR11477:SF0TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 9..367
NoneNo IPR availableCDDcd13749Zn-ribbon_TFIIScoord: 322..368
e-value: 2.08329E-29
score: 107.307
NoneNo IPR availableCDDcd00183TFIIS_Icoord: 24..85
e-value: 3.0892E-16
score: 71.9558
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 310..367
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 36..85
e-value: 3.8E-11
score: 42.7
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 10..88
score: 20.268
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3DG3DSA:1.10.472.30coord: 191..309
e-value: 7.7E-35
score: 121.6
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILYSSF46942Elongation factor TFIIS domain 2coord: 188..299
IPR035441TFIIS/LEDGF domain superfamilyGENE3DG3DSA:1.20.930.10coord: 1..101
e-value: 6.9E-18
score: 66.1
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILYSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 27..100
IPR035100Transcription elongation factor, IIS-typePIRSFPIRSF006704TFIIScoord: 2..369
e-value: 9.3E-99
score: 328.8