CsaV3_6G002210 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G002210
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 1520325 .. 1520826 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTCAGAATCAAAGTTCCGGTCAACTCCAAGCCCACATCATAACTCCCTAAACCAACCAATCAGATTTCACTCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTAGCTTCAACCAATCACCAACTTCCACGTTTCTTCCCATGCGTCGAATTAGAAGCAGAGGAACTTCCCCCTAAAGCTCGTATGCAAAAGAAGAATAATTGAGCTAACTCGAAATTACAACTCAGTGAAGCCTTTTCTTTTTCCTCTTTTTGCTCTGCGAGCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCCATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCCTCCTCTAAAACTCCAACCCACATTCTCTTTAAATTCCCATAA

mRNA sequence

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTCAGAATCAAAGTTCCGGTCAACTCCAAGCCCACATCATAACTCCCTAAACCAACCAATCAGATTTCACTCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTAGCTTCAACCAATCACCAACTTCCACGTTTCTTCCCATGCGTCGAATTAGAAGCAGAGGAACTTCCCCCTAAAGCTCCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCCATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCCTCCTCTAAAACTCCAACCCACATTCTCTTTAAATTCCCATAA

Coding sequence (CDS)

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTCAGAATCAAAGTTCCGGTCAACTCCAAGCCCACATCATAACTCCCTAAACCAACCAATCAGATTTCACTCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTAGCTTCAACCAATCACCAACTTCCACGTTTCTTCCCATGCGTCGAATTAGAAGCAGAGGAACTTCCCCCTAAAGCTCCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCCATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCCTCCTCTAAAACTCCAACCCACATTCTCTTTAAATTCCCATAA

Protein sequence

MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQSTKYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENRFHIMNSSSKTPTHILFKFP

Homology

[Close]

BLAST of CsaV3_6G002210 vs. NCBI nr
Match: KGN45826.1 (hypothetical protein Csa_6G014470 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60
           MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST
Sbjct: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60

Query: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120
           KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR
Sbjct: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120

Query: 121 FHIMNSSSKTPTHILFKFP 140
           FHIMNSSSKTPTHILFKFP
Sbjct: 121 FHIMNSSSKTPTHILFKFP 139

[Close]

BLAST of CsaV3_6G002210 vs. TrEMBL
Match: tr|A0A0A0KDG2|A0A0A0KDG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60
           MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST
Sbjct: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60

Query: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120
           KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR
Sbjct: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120

Query: 121 FHIMNSSSKTPTHILFKFP 140
           FHIMNSSSKTPTHILFKFP
Sbjct: 121 FHIMNSSSKTPTHILFKFP 139

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45826.1	1.9e-75	100.00	hypothetical protein Csa_6G014470 [Cucumis sativus]	[more]

BLAST of CsaV3_6G002210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDG2\|A0A0A0KDG2_CUCSA	1.2e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002210.1	CsaV3_6G002210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G002210	CSPI06G02060	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G002210	ClCG11G005760	Watermelon (Charleston Gray)	cucwcgB452

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G002210	Wax gourd	cucwgoB605
CsaV3_6G002210	Wax gourd	cucwgoB646
CsaV3_6G002210	Cucumber (Chinese Long) v3	cuccucB179
CsaV3_6G002210	Cucumber (Chinese Long) v3	cuccucB203
CsaV3_6G002210	Silver-seed gourd	carcucB0024
CsaV3_6G002210	Silver-seed gourd	carcucB0300
CsaV3_6G002210	Silver-seed gourd	carcucB0711
CsaV3_6G002210	Cucumber (Gy14) v2	cgybcucB189
CsaV3_6G002210	Cucumber (Gy14) v2	cgybcucB242
CsaV3_6G002210	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G002210	Cucumber (Gy14) v1	cgycucB187
CsaV3_6G002210	Cucumber (Gy14) v1	cgycucB218
CsaV3_6G002210	Cucumber (Gy14) v1	cgycucB506
CsaV3_6G002210	Cucurbita maxima (Rimu)	cmacucB0363
CsaV3_6G002210	Cucurbita maxima (Rimu)	cmacucB0811
CsaV3_6G002210	Cucurbita maxima (Rimu)	cmacucB0906
CsaV3_6G002210	Cucurbita maxima (Rimu)	cmacucB0912
CsaV3_6G002210	Cucurbita maxima (Rimu)	cmacucB0913
CsaV3_6G002210	Cucurbita moschata (Rifu)	cmocucB0358
CsaV3_6G002210	Cucurbita moschata (Rifu)	cmocucB0795
CsaV3_6G002210	Cucurbita moschata (Rifu)	cmocucB0899
CsaV3_6G002210	Cucurbita moschata (Rifu)	cmocucB0903
CsaV3_6G002210	Cucurbita pepo (Zucchini)	cpecucB0094
CsaV3_6G002210	Cucurbita pepo (Zucchini)	cpecucB0238
CsaV3_6G002210	Cucurbita pepo (Zucchini)	cpecucB0569
CsaV3_6G002210	Cucurbita pepo (Zucchini)	cpecucB0574
CsaV3_6G002210	Wild cucumber (PI 183967)	cpicucB240
CsaV3_6G002210	Bottle gourd (USVL1VR-Ls)	cuclsiB459
CsaV3_6G002210	Bottle gourd (USVL1VR-Ls)	cuclsiB473
CsaV3_6G002210	Bottle gourd (USVL1VR-Ls)	cuclsiB487
CsaV3_6G002210	Melon (DHL92) v3.5.1	cucmeB487
CsaV3_6G002210	Melon (DHL92) v3.5.1	cucmeB525
CsaV3_6G002210	Melon (DHL92) v3.6.1	cucmedB473
CsaV3_6G002210	Melon (DHL92) v3.6.1	cucmedB513
CsaV3_6G002210	Watermelon (Charleston Gray)	cucwcgB488
CsaV3_6G002210	Watermelon (Charleston Gray)	cucwcgB510
CsaV3_6G002210	Watermelon (97103) v1	cucwmB511
CsaV3_6G002210	Watermelon (97103) v1	cucwmB533
CsaV3_6G002210	Watermelon (97103) v1	cucwmB559
CsaV3_6G002210	Watermelon (97103) v2	cucwmbB441
CsaV3_6G002210	Watermelon (97103) v2	cucwmbB476
CsaV3_6G002210	Watermelon (97103) v2	cucwmbB500