ClCG11G005760 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G005760
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 6251261 .. 6251644 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCATTGTAACCGCCAACTACTAATTGGCGCTTTTAACCGCAATCCACGCTCAAAATCAAAATTTCCGGTCAACTGTAAGTCCATAACGTCATTCCTAACCCTACCAATCAGATTTCATCCAAGTCCAAAATTCAACGGTCAAACAACCGATTACTCTGACTGTGATTACTTTCACCAATCAAAATTATCCACGTGTAGTTTTACGTCAAATTAGAAGCAGAGGAACATCCCCGTAAAGCCGGAGCTGCAAAGAGGAGAATAATTGAGTGAACTCGGAATTGAAACTCAGCGAAGCTTTTTTTCCCGAAAGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTGCCTCCATTAATCCTCGAAGAAGCATTATAG

mRNA sequence

ATGGGCCATTGTAACCGCCAACTACTAATTGGCGCTTTTAACCGCAATCCACGCTCAAAATCAAAATTTCCGGTCAACTGTAAGTCCATAACGTCATTCCTAACCCTACCAATCAGATTTCATCCAAGTCCAAAATTCAACGGTCAAACAACCGATTACTCTGACTGTGATTACTTTCACCAATCAAAATTATCCACGTGTAAAGCAGAGGAACATCCCCGTAAAGCCGGAGCTGCAAAGAGGAGAATAATTGAAATCGGTCCCCTCAAAACACCATCATCACTGCCTCCATTAATCCTCGAAGAAGCATTATAG

Coding sequence (CDS)

ATGGGCCATTGTAACCGCCAACTACTAATTGGCGCTTTTAACCGCAATCCACGCTCAAAATCAAAATTTCCGGTCAACTGTAAGTCCATAACGTCATTCCTAACCCTACCAATCAGATTTCATCCAAGTCCAAAATTCAACGGTCAAACAACCGATTACTCTGACTGTGATTACTTTCACCAATCAAAATTATCCACGTGTAAAGCAGAGGAACATCCCCGTAAAGCCGGAGCTGCAAAGAGGAGAATAATTGAAATCGGTCCCCTCAAAACACCATCATCACTGCCTCCATTAATCCTCGAAGAAGCATTATAG

Protein sequence

MGHCNRQLLIGAFNRNPRSKSKFPVNCKSITSFLTLPIRFHPSPKFNGQTTDYSDCDYFHQSKLSTCKAEEHPRKAGAAKRRIIEIGPLKTPSSLPPLILEEAL
Homology
[Close]
BLAST of ClCG11G005760 vs. TrEMBL
Match: A0A0A0KDG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014470 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 57/104 (54.81%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 1   MGHCNRQLLIGAFNRNPRSKSKFPVNCKSITSFLTLPIRFHPSPKFNGQTTDYSD--CDY 60
           MGHCNRQ+LIGAFNRNPRS+SKF        + L  PIRFH SP FN Q+T Y D     
Sbjct: 10  MGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQSTKYFDFLAST 69

Query: 61  FHQ-SKLSTC---KAEEHPRKAGAAKRRIIEIGPLKTPSSLPPL 99
            HQ  +   C   +AEE P KA + +     IGPLKTPSSLPPL
Sbjct: 70  NHQLPRFFPCVELEAEELPPKAPSCR-----IGPLKTPSSLPPL 108

[Close]
BLAST of ClCG11G005760 vs. NCBI nr
Match: gi|700190622|gb|KGN45826.1| (hypothetical protein Csa_6G014470 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 57/104 (54.81%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 1   MGHCNRQLLIGAFNRNPRSKSKFPVNCKSITSFLTLPIRFHPSPKFNGQTTDYSD--CDY 60
           MGHCNRQ+LIGAFNRNPRS+SKF        + L  PIRFH SP FN Q+T Y D     
Sbjct: 10  MGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQSTKYFDFLAST 69

Query: 61  FHQ-SKLSTC---KAEEHPRKAGAAKRRIIEIGPLKTPSSLPPL 99
            HQ  +   C   +AEE P KA + +     IGPLKTPSSLPPL
Sbjct: 70  NHQLPRFFPCVELEAEELPPKAPSCR-----IGPLKTPSSLPPL 108

The following BLAST results are available for this feature:
BLAST of ClCG11G005760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDG2_CUCSA1.2e-1654.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014470 PE=4 SV=1[more]
BLAST of ClCG11G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190622|gb|KGN45826.1|1.7e-1654.81hypothetical protein Csa_6G014470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G005760.1ClCG11G005760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G005760Csa6G014470Cucumber (Chinese Long) v2cuwcgB429
ClCG11G005760CSPI06G02060Wild cucumber (PI 183967)cpiwcgB450
ClCG11G005760CsaV3_6G002210Cucumber (Chinese Long) v3cucwcgB452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G005760Cucumber (Chinese Long) v3cucwcgB293
ClCG11G005760Cucumber (Chinese Long) v3cucwcgB384
ClCG11G005760Watermelon (97103) v2wcgwmbB063
ClCG11G005760Watermelon (97103) v2wcgwmbB065
ClCG11G005760Watermelon (97103) v2wcgwmbB072
ClCG11G005760Watermelon (97103) v2wcgwmbB080
ClCG11G005760Wax gourdwcgwgoB138
ClCG11G005760Wax gourdwcgwgoB158
ClCG11G005760Wax gourdwcgwgoB169
ClCG11G005760Watermelon (Charleston Gray)wcgwcgB040
ClCG11G005760Watermelon (Charleston Gray)wcgwcgB067
ClCG11G005760Watermelon (Charleston Gray)wcgwcgB076
ClCG11G005760Cucumber (Gy14) v1cgywcgB213
ClCG11G005760Cucumber (Gy14) v1cgywcgB243
ClCG11G005760Cucumber (Gy14) v1cgywcgB562
ClCG11G005760Cucurbita maxima (Rimu)cmawcgB252
ClCG11G005760Cucurbita maxima (Rimu)cmawcgB575
ClCG11G005760Cucurbita maxima (Rimu)cmawcgB619
ClCG11G005760Cucurbita maxima (Rimu)cmawcgB624
ClCG11G005760Cucurbita maxima (Rimu)cmawcgB625
ClCG11G005760Cucurbita moschata (Rifu)cmowcgB240
ClCG11G005760Cucurbita moschata (Rifu)cmowcgB572
ClCG11G005760Cucurbita moschata (Rifu)cmowcgB621
ClCG11G005760Cucurbita moschata (Rifu)cmowcgB625
ClCG11G005760Wild cucumber (PI 183967)cpiwcgB294
ClCG11G005760Cucumber (Chinese Long) v2cuwcgB361
ClCG11G005760Melon (DHL92) v3.5.1mewcgB268
ClCG11G005760Melon (DHL92) v3.5.1mewcgB511
ClCG11G005760Watermelon (97103) v1wcgwmB094
ClCG11G005760Watermelon (97103) v1wcgwmB100
ClCG11G005760Watermelon (97103) v1wcgwmB107
ClCG11G005760Cucurbita pepo (Zucchini)cpewcgB060
ClCG11G005760Cucurbita pepo (Zucchini)cpewcgB159
ClCG11G005760Cucurbita pepo (Zucchini)cpewcgB355
ClCG11G005760Bottle gourd (USVL1VR-Ls)lsiwcgB124
ClCG11G005760Bottle gourd (USVL1VR-Ls)lsiwcgB226
ClCG11G005760Bottle gourd (USVL1VR-Ls)lsiwcgB263
ClCG11G005760Cucumber (Gy14) v2cgybwcgB262
ClCG11G005760Cucumber (Gy14) v2cgybwcgB397
ClCG11G005760Melon (DHL92) v3.6.1medwcgB259
ClCG11G005760Melon (DHL92) v3.6.1medwcgB506
ClCG11G005760Silver-seed gourdcarwcgB0019
ClCG11G005760Silver-seed gourdcarwcgB0255
ClCG11G005760Silver-seed gourdcarwcgB0607
ClCG11G005760Silver-seed gourdcarwcgB0644