CsaV3_6G001980 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTATTGAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGCCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCATGTAGTTTGGATCACATATGATGGACTTCTTATTTCTTGGCTATTGGAGATAATCTTAGAAGATGTTTTCAACATGATAGAAGGAACAAATACGACATTCCAGGTTTGAAAATCATTAGAAAATCAAATGCTTACAATGACAAAAGAAAGTGAAATCCATGTAAGTGAAACTCTTCTCACATTGAAGAAGGGATTCTCAACTCTTGATGAACATTTAAAAAAAATTAAACATCTCTGTGATAAACTAGCTGCCATGAAGAAACCACATGATGATGTTATTAAAGTGTTTCGTCTTGCTAGAGGCTTAGGATCTCGATACCAAGGTTTTCGAACAACAATGTTATCAAAACCAGCAAATCCCTCTTTCAACCAATCTGTTGTGGTTGTTAAAGCACATGATGAAATGTTGTCTAGTGAACTTGAAGAAGAAAATTTTGTGCAAATCAATCATGCTCAAGCTTTTTACAACCAAAAAGGTCGTAATAGAGGACGTGGGAGACAATTCCTCTTCTCGTGGAAGAGGTTTTCCTTAAAAGCAAATTTCAAGGAAATACAATCTTCTAGCAAGCATCAAAATCAACCTTGA ATGGGTATTGAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGCCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCATGTAGTTTGGATCACATATGATGGACTTCTTATTTCTTGGCTATTGGAGATAATCTTAGAAGATGTTTTCAACATGATAGAAGGAACAAATACGACATTCCAGAAGGGATTCTCAACTCTTGATGAACATTTAAAAAAAATTAAACATCTCTGTGATAAACTAGCTGCCATGAAGAAACCACATGATGATGTTATTAAAGTGTTTCGTCTTGCTAGAGGCTTAGGATCTCGATACCAAGGTTTTCGAACAACAATGTTATCAAAACCAGCAAATCCCTCTTTCAACCAATCTGTTGTGGTTGTTAAAGCACATGATGAAATGTTGTCTAGTGAACTTGAAGAAGAAAATTTTGTGCAAATCAATCATGCTCAAGCTTTTTACAACCAAAAAGGTCGTAATAGAGGACGTGGGAGACAATTCCTCTTCTCGTGGAAGAGGTTTTCCTTAAAAGCAAATTTCAAGGAAATACAATCTTCTAGCAAGCATCAAAATCAACCTTGA ATGGGTATTGAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGCCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCATGTAGTTTGGATCACATATGATGGACTTCTTATTTCTTGGCTATTGGAGATAATCTTAGAAGATGTTTTCAACATGATAGAAGGAACAAATACGACATTCCAGAAGGGATTCTCAACTCTTGATGAACATTTAAAAAAAATTAAACATCTCTGTGATAAACTAGCTGCCATGAAGAAACCACATGATGATGTTATTAAAGTGTTTCGTCTTGCTAGAGGCTTAGGATCTCGATACCAAGGTTTTCGAACAACAATGTTATCAAAACCAGCAAATCCCTCTTTCAACCAATCTGTTGTGGTTGTTAAAGCACATGATGAAATGTTGTCTAGTGAACTTGAAGAAGAAAATTTTGTGCAAATCAATCATGCTCAAGCTTTTTACAACCAAAAAGGTCGTAATAGAGGACGTGGGAGACAATTCCTCTTCTCGTGGAAGAGGTTTTCCTTAAAAGCAAATTTCAAGGAAATACAATCTTCTAGCAAGCATCAAAATCAACCTTGA MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIILEDVFNMIEGTNTTFQKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYNQKGRNRGRGRQFLFSWKRFSLKANFKEIQSSSKHQNQP
BLAST of CsaV3_6G001980 vs. NCBI nr
Match: KGN45805.1 (hypothetical protein Csa_6G012300 [Cucumis sativus]) HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia]) HSP 1 Score: 154.1 bits (388), Expect = 5.0e-34 Identity = 89/198 (44.95%), Postives = 114/198 (57.58%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. NCBI nr
Match: CAN74381.1 (hypothetical protein VITISV_007944 [Vitis vinifera]) HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26 Identity = 72/195 (36.92%), Postives = 106/195 (54.36%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. NCBI nr
Match: PNY13708.1 (hypothetical protein L195_g010371 [Trifolium pratense]) HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25 Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. NCBI nr
Match: XP_012856951.1 (PREDICTED: uncharacterized protein LOC105976216 [Erythranthe guttata]) HSP 1 Score: 114.0 bits (284), Expect = 5.8e-22 Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. TrEMBL
Match: tr|A0A0A0K7S3|A0A0A0K7S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012300 PE=4 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 1.1e-93 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. TrEMBL
Match: tr|A5BC00|A5BC00_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007944 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26 Identity = 72/195 (36.92%), Postives = 106/195 (54.36%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. TrEMBL
Match: tr|A0A2K3PEI3|A0A2K3PEI3_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g010371 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25 Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. TrEMBL
Match: tr|A0A2C9VFN4|A0A2C9VFN4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G123300 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 61/161 (37.89%), Postives = 92/161 (57.14%), Query Frame = 0
BLAST of CsaV3_6G001980 vs. TrEMBL
Match: tr|A5AU03|A5AU03_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013750 PE=3 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19 Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |