CsaV3_6G000750 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000750
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLeucine-rich repeat extensin-like protein
Locationchr6 : 480204 .. 481079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA

mRNA sequence

ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA

Coding sequence (CDS)

ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA

Protein sequence

MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDLALFHINSNRFCGIIPSSFSNLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKDFDAIFLNNNRFNSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLSGCFPPEIGNLVNLTVL
Homology
[Close]
BLAST of CsaV3_6G000750 vs. NCBI nr
Match: XP_011658379.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN45681.1 hypothetical protein Csa_6G006190 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 6.9e-80
Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 0 

Query: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60
           MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE
Sbjct: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60

Query: 61  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120
           LDIPDTFPNERLKKAY ALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE
Sbjct: 61  LDIPDTFPNERLKKAYVALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120

Query: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF 222
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF 221

[Close]
BLAST of CsaV3_6G000750 vs. NCBI nr
Match: KGN45680.1 (hypothetical protein Csa_6G006180 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 6.0e-76
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60
           MASLHRKQA+HACFLIILFLFFSLPSFS+SLSEAEASYLTRR+LLTLKN+ ELP DFQYE
Sbjct: 1   MASLHRKQAHHACFLIILFLFFSLPSFSVSLSEAEASYLTRRRLLTLKNHYELPDDFQYE 60

Query: 61  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120
           LDI DTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE
Sbjct: 61  LDIADTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120

Query: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 151
           VVAGIDLNHGDIAGHLPPELGLLTDLALFH
Sbjct: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 150

[Close]
BLAST of CsaV3_6G000750 vs. NCBI nr
Match: XP_011656354.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 6.0e-76
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60
           MASLHRKQA+HACFLIILFLFFSLPSFS+SLSEAEASYLTRR+LLTLKN+ ELP DFQYE
Sbjct: 11  MASLHRKQAHHACFLIILFLFFSLPSFSVSLSEAEASYLTRRRLLTLKNHYELPDDFQYE 70

Query: 61  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120
           LDI DTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE
Sbjct: 71  LDIADTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 130

Query: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 151
           VVAGIDLNHGDIAGHLPPELGLLTDLALFH
Sbjct: 131 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 160

[Close]
BLAST of CsaV3_6G000750 vs. NCBI nr
Match: XP_016902246.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 3.9e-67
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 5   HRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIP 64
           HRKQA HACFLIILFLFFSLPS  +S+SE EASYLTRRQLLTLK +DELP DF+Y+LDI 
Sbjct: 1   HRKQAYHACFLIILFLFFSLPSLYVSISEVEASYLTRRQLLTLKQHDELPNDFKYKLDIA 60

Query: 65  DTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAG 124
           DTFPNERLK AY ALQAWKLA+YSDPQNMTANWVGADVCSYTGVFCAPALD+P IEVVAG
Sbjct: 61  DTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAG 120

Query: 125 IDLNHGDIAGHLPPELGLLTDLALF 150
           IDLNHGDIAG+LPPELGLLTDLALF
Sbjct: 121 IDLNHGDIAGYLPPELGLLTDLALF 145

[Close]
BLAST of CsaV3_6G000750 vs. NCBI nr
Match: XP_016902245.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 2.5e-66
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 0 

Query: 6   RKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPD 65
           RKQANHACFLIILFLFFSLPS S+S+SE EASYL RRQLLTLK +DELP D++Y+LDI D
Sbjct: 3   RKQANHACFLIILFLFFSLPSISVSISEVEASYLIRRQLLTLKQHDELPNDYKYKLDIAD 62

Query: 66  TFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGI 125
           TFPNERLK AY ALQAWKLA+YSDPQNMTANWVG DVCSYTGVFCAPALD+P IEVVAGI
Sbjct: 63  TFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGVDVCSYTGVFCAPALDNPNIEVVAGI 122

Query: 126 DLNHGDIAGHLPPELGLLTDLALF 150
           DLNHGDIAG+LPPELGLLTDLALF
Sbjct: 123 DLNHGDIAGYLPPELGLLTDLALF 146

[Close]
BLAST of CsaV3_6G000750 vs. TAIR10
Match: AT3G19020.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-45
Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 0 

Query: 13  CFLIILFLFFSLPSFS-ISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNER 72
           CFL++     S+  +S  +L++ EAS+LTRRQLL L    +LP D +YE+D+   F N R
Sbjct: 12  CFLLLFCFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANNR 71

Query: 73  LKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGD 132
           LK+AY ALQAWK A YSDP N  ANWVG DVCSY GVFCAPALDDP + VVAGIDLNH D
Sbjct: 72  LKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHAD 131

Query: 133 IAGHLPPELGLLTDLALF 150
           IAG+LPPELGLLTD+ALF
Sbjct: 132 IAGYLPPELGLLTDVALF 149

[Close]
BLAST of CsaV3_6G000750 vs. TAIR10
Match: AT2G15880.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0 

Query: 27  FSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAV 86
           F  +L++AE S++ +RQLLTL    ELP D +YE+D+  TF N RLK+AY ALQAWK AV
Sbjct: 15  FVPTLTDAEVSFIAQRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWKKAV 74

Query: 87  YSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDL 146
           YSDP N T NW G  VC YTGVFCAPALDDP + VVAG+DLN  DIAGHLP ELGL+TD+
Sbjct: 75  YSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDV 134

Query: 147 A 148
           A
Sbjct: 135 A 135

[Close]
BLAST of CsaV3_6G000750 vs. TAIR10
Match: AT4G33970.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-40
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 0 

Query: 13  CFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERL 72
           CF ++ F F S    S +L++ EA+++ +RQLLTL +  ELP D +YE+D+  TF N RL
Sbjct: 27  CFFLLFFSFLSSSFVSFALTDTEAAFIVQRQLLTLPDNGELPDDIEYEVDLKATFANTRL 86

Query: 73  KKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDI 132
           K+AY ALQAWK A++SDP N T NW G  VC YTGV CAPALDD  + VVAG+DLN  DI
Sbjct: 87  KRAYIALQAWKKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADI 146

Query: 133 AGHLPPELGLL 144
           AGHLP ELGL+
Sbjct: 147 AGHLPAELGLM 157

[Close]
BLAST of CsaV3_6G000750 vs. TAIR10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-36
Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 0 

Query: 10  NHACFLIILFL--FFSLPSFSIS------LSEAEASYLTRRQLLTLKNYDEL-PLDFQYE 69
           N +   ++LF+  FF+  S+S+S      LS+ E   +T+RQLL  +  DE        +
Sbjct: 9   NTSLIFVLLFITFFFTSISYSLSLTFNGDLSDNEVRLITQRQLLYFR--DEFGDRGENVD 68

Query: 70  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 129
           +D    F N RL+ AY ALQAWK A+ SDP N T NW+G+DVCSYTGV+CAPALD+ +I 
Sbjct: 69  VDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIR 128

Query: 130 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 151
            VAGIDLNH DIAG+LP ELGLLTDLALFH
Sbjct: 129 TVAGIDLNHADIAGYLPQELGLLTDLALFH 156

[Close]
BLAST of CsaV3_6G000750 vs. TAIR10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-34
Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 0 

Query: 16  IILFLFF--------SLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTF 75
           I+LF FF        S+ S    LS+ E  ++ RRQLL            +  +D    F
Sbjct: 7   ILLFFFFLINLTNALSISSDGGVLSDNEVRHIQRRQLLEFAE-----RSVKITVDPSLNF 66

Query: 76  PNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDL 135
            N RL+ AY ALQAWK A+ SDP N T+NW+G++VC+YTGVFC+PALD+ KI  VAGIDL
Sbjct: 67  ENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDL 126

Query: 136 NHGDIAGHLPPELGLLTDLALFH 151
           NH DIAG+LP ELGLL+DLALFH
Sbjct: 127 NHADIAGYLPEELGLLSDLALFH 144

[Close]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match: sp|Q9LJ64|PLRX1_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.1e-44
Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 0 

Query: 13  CFLIILFLFFSLPSFS-ISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNER 72
           CFL++     S+  +S  +L++ EAS+LTRRQLL L    +LP D +YE+D+   F N R
Sbjct: 12  CFLLLFCFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANNR 71

Query: 73  LKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGD 132
           LK+AY ALQAWK A YSDP N  ANWVG DVCSY GVFCAPALDDP + VVAGIDLNH D
Sbjct: 72  LKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHAD 131

Query: 133 IAGHLPPELGLLTDLALF 150
           IAG+LPPELGLLTD+ALF
Sbjct: 132 IAGYLPPELGLLTDVALF 149

[Close]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match: sp|Q9XIL9|PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PEX3 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-40
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0 

Query: 27  FSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAV 86
           F  +L++AE S++ +RQLLTL    ELP D +YE+D+  TF N RLK+AY ALQAWK AV
Sbjct: 15  FVPTLTDAEVSFIAQRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWKKAV 74

Query: 87  YSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDL 146
           YSDP N T NW G  VC YTGVFCAPALDDP + VVAG+DLN  DIAGHLP ELGL+TD+
Sbjct: 75  YSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDV 134

Query: 147 A 148
           A
Sbjct: 135 A 135

[Close]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match: sp|O81765|PLRX4_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-38
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 0 

Query: 13  CFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERL 72
           CF ++ F F S    S +L++ EA+++ +RQLLTL +  ELP D +YE+D+  TF N RL
Sbjct: 27  CFFLLFFSFLSSSFVSFALTDTEAAFIVQRQLLTLPDNGELPDDIEYEVDLKATFANTRL 86

Query: 73  KKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDI 132
           K+AY ALQAWK A++SDP N T NW G  VC YTGV CAPALDD  + VVAG+DLN  DI
Sbjct: 87  KRAYIALQAWKKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADI 146

Query: 133 AGHLPPELGLL 144
           AGHLP ELGL+
Sbjct: 147 AGHLPAELGLM 157

[Close]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match: sp|Q9SN46|LRX5_ARATH (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 7.9e-35
Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 0 

Query: 10  NHACFLIILFL--FFSLPSFSIS------LSEAEASYLTRRQLLTLKNYDEL-PLDFQYE 69
           N +   ++LF+  FF+  S+S+S      LS+ E   +T+RQLL  +  DE        +
Sbjct: 9   NTSLIFVLLFITFFFTSISYSLSLTFNGDLSDNEVRLITQRQLLYFR--DEFGDRGENVD 68

Query: 70  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 129
           +D    F N RL+ AY ALQAWK A+ SDP N T NW+G+DVCSYTGV+CAPALD+ +I 
Sbjct: 69  VDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIR 128

Query: 130 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 151
            VAGIDLNH DIAG+LP ELGLLTDLALFH
Sbjct: 129 TVAGIDLNHADIAGYLPQELGLLTDLALFH 156

[Close]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match: sp|Q9T0K5|LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-33
Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 0 

Query: 16  IILFLFF--------SLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTF 75
           I+LF FF        S+ S    LS+ E  ++ RRQLL            +  +D    F
Sbjct: 7   ILLFFFFLINLTNALSISSDGGVLSDNEVRHIQRRQLLEFAE-----RSVKITVDPSLNF 66

Query: 76  PNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDL 135
            N RL+ AY ALQAWK A+ SDP N T+NW+G++VC+YTGVFC+PALD+ KI  VAGIDL
Sbjct: 67  ENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDL 126

Query: 136 NHGDIAGHLPPELGLLTDLALFH 151
           NH DIAG+LP ELGLL+DLALFH
Sbjct: 127 NHADIAGYLPEELGLLSDLALFH 144

[Close]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match: tr|A0A0A0KD20|A0A0A0KD20_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006190 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.6e-80
Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 0 

Query: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60
           MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE
Sbjct: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60

Query: 61  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120
           LDIPDTFPNERLKKAY ALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE
Sbjct: 61  LDIPDTFPNERLKKAYVALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120

Query: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF 222
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLFTKDFDAIF 221

[Close]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match: tr|A0A0A0K7H4|A0A0A0K7H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYE 60
           MASLHRKQA+HACFLIILFLFFSLPSFS+SLSEAEASYLTRR+LLTLKN+ ELP DFQYE
Sbjct: 1   MASLHRKQAHHACFLIILFLFFSLPSFSVSLSEAEASYLTRRRLLTLKNHYELPDDFQYE 60

Query: 61  LDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120
           LDI DTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE
Sbjct: 61  LDIADTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIE 120

Query: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 151
           VVAGIDLNHGDIAGHLPPELGLLTDLALFH
Sbjct: 121 VVAGIDLNHGDIAGHLPPELGLLTDLALFH 150

[Close]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match: tr|A0A1S4E1Z4|A0A1S4E1Z4_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498004 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.6e-67
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 5   HRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIP 64
           HRKQA HACFLIILFLFFSLPS  +S+SE EASYLTRRQLLTLK +DELP DF+Y+LDI 
Sbjct: 1   HRKQAYHACFLIILFLFFSLPSLYVSISEVEASYLTRRQLLTLKQHDELPNDFKYKLDIA 60

Query: 65  DTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAG 124
           DTFPNERLK AY ALQAWKLA+YSDPQNMTANWVGADVCSYTGVFCAPALD+P IEVVAG
Sbjct: 61  DTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAG 120

Query: 125 IDLNHGDIAGHLPPELGLLTDLALF 150
           IDLNHGDIAG+LPPELGLLTDLALF
Sbjct: 121 IDLNHGDIAGYLPPELGLLTDLALF 145

[Close]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match: tr|A0A1S4E2P1|A0A1S4E2P1_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC107991605 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 0 

Query: 6   RKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPD 65
           RKQANHACFLIILFLFFSLPS S+S+SE EASYL RRQLLTLK +DELP D++Y+LDI D
Sbjct: 3   RKQANHACFLIILFLFFSLPSISVSISEVEASYLIRRQLLTLKQHDELPNDYKYKLDIAD 62

Query: 66  TFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGI 125
           TFPNERLK AY ALQAWKLA+YSDPQNMTANWVG DVCSYTGVFCAPALD+P IEVVAGI
Sbjct: 63  TFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGVDVCSYTGVFCAPALDNPNIEVVAGI 122

Query: 126 DLNHGDIAGHLPPELGLLTDLALF 150
           DLNHGDIAG+LPPELGLLTDLALF
Sbjct: 123 DLNHGDIAGYLPPELGLLTDLALF 146

[Close]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match: tr|A0A1S3C8I6|A0A1S3C8I6_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498003 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.1e-61
Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 0 

Query: 7   KQANHACFL-IILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPD 66
           ++A+  C L    FLFFSLPSFS+S+SEAEASYLTRRQLL LK +DELP DF+Y+LDI D
Sbjct: 19  QKASSPCLLSYYSFLFFSLPSFSVSISEAEASYLTRRQLLALKEHDELPDDFKYQLDIAD 78

Query: 67  TFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGI 126
           TFPNERLK AY ALQAWKLA+YSDPQNMTANWVGADVCSYTGVFCAPALD+P IEVVAGI
Sbjct: 79  TFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAGI 138

Query: 127 DLNHGDIAGHLPPELGLLTDLALF 150
           DLNHGDIAG+LPPELGLLTDLALF
Sbjct: 139 DLNHGDIAGYLPPELGLLTDLALF 162

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658379.16.9e-8099.55PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN456... [more]
KGN45680.16.0e-7695.33hypothetical protein Csa_6G006180 [Cucumis sativus][more]
XP_011656354.16.0e-7695.33PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis ... [more]
XP_016902246.13.9e-6787.59PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial ... [more]
XP_016902245.12.5e-6686.81PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis ... [more]
BLAST of CsaV3_6G000750 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19020.13.9e-4564.49Leucine-rich repeat (LRR) family protein[more]
AT2G15880.11.5e-4165.29Leucine-rich repeat (LRR) family protein[more]
AT4G33970.18.5e-4058.02Leucine-rich repeat (LRR) family protein[more]
AT4G18670.14.4e-3654.00Leucine-rich repeat (LRR) family protein[more]
AT4G13340.12.4e-3453.15Leucine-rich repeat (LRR) family protein[more]
BLAST of CsaV3_6G000750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LJ64|PLRX1_ARATH7.1e-4464.49Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thali... [more]
sp|Q9XIL9|PLRX3_ARATH2.8e-4065.29Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thali... [more]
sp|O81765|PLRX4_ARATH1.5e-3858.02Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thali... [more]
sp|Q9SN46|LRX5_ARATH7.9e-3554.00Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
sp|Q9T0K5|LRX3_ARATH4.3e-3353.15Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
BLAST of CsaV3_6G000750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KD20|A0A0A0KD20_CUCSA4.6e-8099.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006190 PE=4 SV=1[more]
tr|A0A0A0K7H4|A0A0A0K7H4_CUCSA4.0e-7695.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1[more]
tr|A0A1S4E1Z4|A0A1S4E1Z4_CUCME2.6e-6787.59pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3... [more]
tr|A0A1S4E2P1|A0A1S4E2P1_CUCME1.7e-6686.81pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3... [more]
tr|A0A1S3C8I6|A0A1S3C8I6_CUCME8.1e-6182.64pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013210LRR_N_plant-typ
IPR032675LRR_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G000750.1CsaV3_6G000750.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 75..215
e-value: 1.5E-25
score: 91.6
coord: 216..291
e-value: 2.5E-12
score: 48.5
IPR013210Leucine-rich repeat-containing N-terminal, plant-typePFAMPF08263LRRNT_2coord: 75..110
e-value: 3.4E-4
score: 20.7
NoneNo IPR availablePANTHERPTHR44852:SF1SUBFAMILY NOT NAMEDcoord: 10..291
NoneNo IPR availablePANTHERPTHR44852FAMILY NOT NAMEDcoord: 10..291
NoneNo IPR availableSUPERFAMILYSSF52058L domain-likecoord: 85..291

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G000750CmaCh08G008960Cucurbita maxima (Rimu)cmacucB1073
CsaV3_6G000750CmoCh17G004250Cucurbita moschata (Rifu)cmocucB0432
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G000750Wax gourdcucwgoB550
CsaV3_6G000750Wax gourdcucwgoB560
CsaV3_6G000750Cucumber (Chinese Long) v3cuccucB151
CsaV3_6G000750Cucumber (Chinese Long) v3cuccucB204
CsaV3_6G000750Silver-seed gourdcarcucB0081
CsaV3_6G000750Silver-seed gourdcarcucB0637
CsaV3_6G000750Cucumber (Gy14) v2cgybcucB152
CsaV3_6G000750Cucumber (Gy14) v2cgybcucB243
CsaV3_6G000750Cucumber (Gy14) v2cgybcucB298
CsaV3_6G000750Cucumber (Gy14) v1cgycucB203
CsaV3_6G000750Cucumber (Gy14) v1cgycucB471
CsaV3_6G000750Cucurbita maxima (Rimu)cmacucB0440
CsaV3_6G000750Cucurbita moschata (Rifu)cmocucB0363
CsaV3_6G000750Cucurbita moschata (Rifu)cmocucB1055
CsaV3_6G000750Cucurbita pepo (Zucchini)cpecucB0165
CsaV3_6G000750Cucurbita pepo (Zucchini)cpecucB0242
CsaV3_6G000750Cucurbita pepo (Zucchini)cpecucB0395
CsaV3_6G000750Wild cucumber (PI 183967)cpicucB189
CsaV3_6G000750Wild cucumber (PI 183967)cpicucB307
CsaV3_6G000750Wild cucumber (PI 183967)cpicucB364
CsaV3_6G000750Bottle gourd (USVL1VR-Ls)cuclsiB418
CsaV3_6G000750Bottle gourd (USVL1VR-Ls)cuclsiB429
CsaV3_6G000750Melon (DHL92) v3.5.1cucmeB426
CsaV3_6G000750Melon (DHL92) v3.5.1cucmeB430
CsaV3_6G000750Melon (DHL92) v3.5.1cucmeB511
CsaV3_6G000750Melon (DHL92) v3.6.1cucmedB417
CsaV3_6G000750Melon (DHL92) v3.6.1cucmedB420
CsaV3_6G000750Melon (DHL92) v3.6.1cucmedB499
CsaV3_6G000750Watermelon (Charleston Gray)cucwcgB456
CsaV3_6G000750Watermelon (Charleston Gray)cucwcgB502
CsaV3_6G000750Watermelon (97103) v1cucwmB529
CsaV3_6G000750Watermelon (97103) v1cucwmB564
CsaV3_6G000750Watermelon (97103) v1cucwmB565
CsaV3_6G000750Watermelon (97103) v2cucwmbB431
CsaV3_6G000750Watermelon (97103) v2cucwmbB492