CsaV3_6G000750.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDLALFHINSNRFCGIIPSSFSNLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKDFDAIFLNNNRFNSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLSGCFPPEIGNLVNLTVL
BLAST of CsaV3_6G000750.1 vs. NCBI nr
Match: XP_011658379.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN45681.1 hypothetical protein Csa_6G006190 [Cucumis sativus]) HSP 1 Score: 307.0 bits (785), Expect = 6.9e-80 Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. NCBI nr
Match: KGN45680.1 (hypothetical protein Csa_6G006180 [Cucumis sativus]) HSP 1 Score: 293.9 bits (751), Expect = 6.0e-76 Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. NCBI nr
Match: XP_011656354.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus]) HSP 1 Score: 293.9 bits (751), Expect = 6.0e-76 Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. NCBI nr
Match: XP_016902246.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial [Cucumis melo]) HSP 1 Score: 264.6 bits (675), Expect = 3.9e-67 Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. NCBI nr
Match: XP_016902245.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis melo]) HSP 1 Score: 261.9 bits (668), Expect = 2.5e-66 Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TAIR10
Match: AT3G19020.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 179.1 bits (453), Expect = 3.9e-45 Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TAIR10
Match: AT2G15880.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41 Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TAIR10
Match: AT4G33970.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 161.4 bits (407), Expect = 8.5e-40 Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TAIR10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 149.1 bits (375), Expect = 4.4e-36 Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TAIR10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 143.3 bits (360), Expect = 2.4e-34 Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. Swiss-Prot
Match: sp|Q9LJ64|PLRX1_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=2 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 7.1e-44 Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. Swiss-Prot
Match: sp|Q9XIL9|PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PEX3 PE=2 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.8e-40 Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. Swiss-Prot
Match: sp|O81765|PLRX4_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=2 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.5e-38 Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. Swiss-Prot
Match: sp|Q9SN46|LRX5_ARATH (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2) HSP 1 Score: 149.1 bits (375), Expect = 7.9e-35 Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. Swiss-Prot
Match: sp|Q9T0K5|LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 4.3e-33 Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TrEMBL
Match: tr|A0A0A0KD20|A0A0A0KD20_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006190 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 4.6e-80 Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TrEMBL
Match: tr|A0A0A0K7H4|A0A0A0K7H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76 Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TrEMBL
Match: tr|A0A1S4E1Z4|A0A1S4E1Z4_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498004 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 2.6e-67 Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TrEMBL
Match: tr|A0A1S4E2P1|A0A1S4E2P1_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC107991605 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66 Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 0
BLAST of CsaV3_6G000750.1 vs. TrEMBL
Match: tr|A0A1S3C8I6|A0A1S3C8I6_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498003 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 8.1e-61 Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
|