CsaV3_5G040250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G040250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 31666874 .. 31667532 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCCATCTCGAATTTACCATATCTATTCTCATTCAAAGCCTCATATTTTGTTTCCATTTATACAATCTGTCAAACTACTATATATATACGAATTAGCATCAACAGCTTGGATATGTTATCACAACCACAAAGAAACTTAAAGTGATTATGGAGAAGAAGACATTCATTTCCCTTCCTCTCTTATCTTTTCTTCTTCTCTGCCTTTTTTCCATTGCTCATTCTCAAGGTATATAACCTTTTCAATTATTTCCATTCAAATGCTACAAATTGACTATGTTATCTGCATTTTTTTATTGTAATTTGGATAATAACATGTGTGTTTAATTACGTTCAAAATTGATGTATGTATGGCGGGGGGATTGCAGATTCTGAGGATCAATCAAAAACATGCCCAGTGAAATTTGCATCAACAGGGACATGTTCTGGGCCATTTGGAGTATCAGAATGTTACCATGAAGCAATGGCAAAGTATGGAAATATCCCACCAAAGGGTTGTGAATGCATTCCTGATGGCGCTAATTCTCGCTTCTGCCTATGCAATATCATTTGTTAATCGATACGTACCAATATGACAATCAAATAAATGATGGAGTTCTTGTAATATACAAAGCCCAATCAATGCATGTTAACTCATTATATGTTTCATCTACTCTCTCTT

mRNA sequence

ATGGAGAAGAAGACATTCATTTCCCTTCCTCTCTTATCTTTTCTTCTTCTCTGCCTTTTTTCCATTGCTCATTCTCAAGATTCTGAGGATCAATCAAAAACATGCCCAGTGAAATTTGCATCAACAGGGACATGTTCTGGGCCATTTGGAGTATCAGAATGTTACCATGAAGCAATGGCAAAGTATGGAAATATCCCACCAAAGGGTTGTGAATGCATTCCTGATGGCGCTAATTCTCGCTTCTGCCTATGCAATATCATTTGTTAA

Coding sequence (CDS)

ATGGAGAAGAAGACATTCATTTCCCTTCCTCTCTTATCTTTTCTTCTTCTCTGCCTTTTTTCCATTGCTCATTCTCAAGATTCTGAGGATCAATCAAAAACATGCCCAGTGAAATTTGCATCAACAGGGACATGTTCTGGGCCATTTGGAGTATCAGAATGTTACCATGAAGCAATGGCAAAGTATGGAAATATCCCACCAAAGGGTTGTGAATGCATTCCTGATGGCGCTAATTCTCGCTTCTGCCTATGCAATATCATTTGTTAA

Protein sequence

MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC

Homology

[Close]

BLAST of CsaV3_5G040250 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_5G650550 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60
          MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 89
          KYGNIPPKGCECIPDGANSRFCLCNIIC
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CsaV3_5G040250 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_5G650540 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

[Close]

BLAST of CsaV3_5G040250 vs. TrEMBL
Match: tr|A0A0A0KSV3|A0A0A0KSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60
          MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 89
          KYGNIPPKGCECIPDGANSRFCLCNIIC
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CsaV3_5G040250 vs. TrEMBL
Match: tr|A0A0A0KUV4|A0A0A0KUV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

The following BLAST results are available for this feature:

BLAST of CsaV3_5G040250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52690.1	1.3e-45	100.00	hypothetical protein Csa_5G650550 [Cucumis sativus]	[more]
KGN52689.1	3.5e-19	68.33	hypothetical protein Csa_5G650540 [Cucumis sativus]	[more]

BLAST of CsaV3_5G040250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G040250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G040250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSV3\|A0A0A0KSV3_CUCSA	8.5e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1	[more]
tr\|A0A0A0KUV4\|A0A0A0KUV4_CUCSA	2.3e-19	68.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

Vocabulary: **INTERPRO**
Term	Definition
IPR010682	SCRL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G040250.1	CsaV3_5G040250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010682	Plant self-incompatibility response	PFAM	PF06876	SCRL	coord: 21..85 e-value: 2.9E-5 score: 24.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G040250	CmaCh01G008410	Cucurbita maxima (Rimu)	cmacucB0576

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G040250	Wax gourd	cucwgoB480
CsaV3_5G040250	Silver-seed gourd	carcucB0391
CsaV3_5G040250	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G040250	Cucumber (Gy14) v1	cgycucB357
CsaV3_5G040250	Cucurbita maxima (Rimu)	cmacucB0037
CsaV3_5G040250	Cucurbita moschata (Rifu)	cmocucB0024
CsaV3_5G040250	Cucurbita moschata (Rifu)	cmocucB0565
CsaV3_5G040250	Cucurbita pepo (Zucchini)	cpecucB0717
CsaV3_5G040250	Cucurbita pepo (Zucchini)	cpecucB0980
CsaV3_5G040250	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G040250	Bottle gourd (USVL1VR-Ls)	cuclsiB414
CsaV3_5G040250	Melon (DHL92) v3.5.1	cucmeB358
CsaV3_5G040250	Melon (DHL92) v3.6.1	cucmedB350
CsaV3_5G040250	Watermelon (Charleston Gray)	cucwcgB433
CsaV3_5G040250	Watermelon (Charleston Gray)	cucwcgB435
CsaV3_5G040250	Watermelon (97103) v1	cucwmB402
CsaV3_5G040250	Watermelon (97103) v2	cucwmbB420