CmaCh01G008410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G008410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr01 : 4624004 .. 4627864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGTTGATGTTTTTTGGTCTTCTTCTCATCTGCCTTGTATCCATTTCTGAGTCAGCTGGTAAGCCTTTGATTGAAAATATGTTGTTTTAATGTGATGGTTGAAGGTTTTGTTAATTTGTGCAGTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGCATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGGAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGGGTGAGCAGTCTCGCATTTGCCGCTGCGATCTTTTCTGTACCTAAATCTTCAATGCAATGCTGCCCCAACACTGCCTTCTATCTGCTTTTGTTTTTGAATCATATCATCTTGCTGTTCTTGTTGGTAGTGAGTACTTTTGTCTCGGTAGTAGAAAATTTAAATAAAGTGTTGTTTGTGAGATTATTTTAAAATTATTTTAAAATGGGGATTAAGTAAAGAGTAACTCTCCTATGTGACTCTGCAGTTCTAGAACGCTCTCCCACCTCGACCAGTAATTATATGTCACTTTAAAAAGTAAGGTAATATTTGGTGAGTATAAACGTAGTAACTTGCTCTAATAACAACGATGATCTAATAAGTTAAAATGGGCTTTAGGAAGTTTGGGCCTAAGTTCTATAGTTATCTAAGCTTCTCGGAGGCCTTGAAGTTCCAAGCGGTTTTCGTGTTCACCACAAACTCAATTAGGGTCTGGACATCATTATCTTAATTACATCAAACTCAATCGAGATATGGGAGTTGTTCACCAGTTCTAGTGTCGTGGGTCTTCTAGATGACTTATTAGAGTTTTTGGGTGAATCAACTTTTTGTTCTTAGACTTAGATAGCTTACATTGCCTTAGAAGTGAATCATTGATCGTGAATCTGGAAGGTGATACCTTATTGTAACGTCTCCGGAAAGGAAAAAAGAAAATAATAATAATAATAACAAAAAAATAAAAAATAAATAACAAAACGGGAAAGAAAAAATGGCAGATTTTGGGAAGGAAAAAATTGGAGGAAGAAACAAAGGAAAGAATATAGCAGATTTTGGAGAGAAAAGTTGGAAATGGCTTTCATTTCAAGTAGATTTTGTGGCCGAACAAGCTTGAATTCTGAATGAGAAGTGTTTGGTTGATGAAGACAAACTTCGCCTAATATTTGACGAAACCACAAAGTCTGAATGAGTTATGTTTGGTTGAGTTCTGCTCGAAGTTTGTCATGAGCATGTCAAAATCATGATGACTTACGGTTGAAATAGTATGATCGTGACACATAGCGTTGTCACCCTCCAGCCTCGATTTGAGCTTGGTAAAAGCAAATCGTTTCTAAAACCCATAAAACATAAACTTCCTCGATCCTTTAACTTATTTATGTGATTCCGTTTAAAAATTATTATCCTTGACCCACACCAAAAATTCAAATATTCATTGTTAAACTAGAAAATATCAATTTATTCCTTTTACAAATTATTAAAAAAAAAGGTATAATCTAATTTTACGAGGAAAAGATAAGAAATCCCTATATATGGTTAAATTATGAAATAATATAAATATTTGCTCTATTTCTCGGAAGAAAATGACAAAATTCTTGTAATTTCTCAGGTTCATTTTCATTTAAACCGCCCTGAATTTCCACTTATTTAGAGTTGTTATCGTTATCTTCGTCTATACTCATGCAGAATTAAACATTTAAAATTTTATCATAAAACATAAACATCATCTTAAAACACTGTCATGGACTTACGTGTTCCAAAAACATCTTTTAAATTACATAATGAAAATCTATATAAAATAAATAACATTAAAATGAAAAAGACTCTATTCTAATCTAAGTTTAAGAAAATAAGTATAGTTATCGTATGCATGTGTCATGGTCTCGAATTGCGATGTCATCGTCAGTCATGTAAAAATAGATGCCTTGTCTTTGCCTCAAAAAGAAGTAGCACACTGCTAGAGTATTTTAAGAAATACTCAGTAAGTAACTCCACTATTGGAATCAGATAACGCAAATACATGCAACTCATGATCTAGAGACCTATCATTTAAAAACCATCATAGAGGTAGTTTCCAATCTGGACAAAATTGGATGTGTAGTATTCTCTATATACGACCCACATGTGTGAGTGTGGATCCCCAGGAAGTTCTCACCCCCTGGATTTATCATAGTCGAGCTAGTTGTCCGTAGCGACATTCGGAGATCAATAGACCTCGAGTGTCATGCGAGACATGATCATCATCATCATATGTATGCATTCGTACTCATCATCATAAATGGGAAAGTATCCCAATGTATATGAACACACAAAATGCATGAGGTCCCTATAGTTTTTCATCTTTAAATCATCATTATGACACAACCGTATACATCGTTCACACATTATTTACATGCACGCATTAACCTTCATATATTTATCATCATTAACATTAACTAGAGTTGTGTCTTTGAAAGCACATCATCATAGTGCATCGTGACATTTAGTACATGCACATCATCTTAATATGAAACATCATCATATTAAGTCATTTCATCATCATACGTCTCCCATCATCTTGTTATCATGTCTCATTATCATCATGTAAACATCATGTGCATCATCACATCATCATCTAACGTTATCACATCATAATATAACATCATCACATCATCATTTAACGTAATCATGACATTATATAACCTAATCACATCATCATATAACGTCTTATATCATCATCATTTAACATCATCACGTCACTATATAACATCATCATCATTTAAAAATTGTCAATATTATTCCACTACTTGAATCACACCAACGATAAAAAGACCTTTAGTCATTTCATATCTCCCATTTTTTTCTCACTACATGTACTTTGTTTTTTCTTTTAATTTTGTTCACCTTATCATCCTTGATTTTAATCCATTCTTACCTTTTGTTTTTTTTTTTTAATGTTGTTGGTCGGGACTAATTTTTTGACAAGTCAAACAATAACTCCAATCTAAATAATTGAAACAAAATAATAAAATAAAGATCTAAATAATTGAAACATAGTAGAAGAAAACCAAATCTAACTTACTAAAAAAATTTTCAATTTTGTATAAACCCATTTTTTCTTTTCTCTCCCCATGTAAATCTGTATTTCTGTTTTAAGAATCCAACATTTGAGCCAAGAAAATTTACTATTTTTGTTTTGTTTTTTTCGAGAAGAAATGATGTTGGAAAAGTGTCGGGAGGAGAGATATTTGAGGAAGGAGTTGCGTGAAATTAGTGGACAGATTGAGATCCGTTACAATTTTGTTATTATTATTTATTTATTTTTATTACATAAACAACTCTCCTAGGTAATATAAATAGGAACTTGAATGTGATAATCTCAACCACAAAAAAAAAAAAAAAAAAAAAGATCATAGCAAAGAACACAAAAAGGTGTGTAATTATGGAGAAGAAGTTGATGAGTTTTGGTCTCTTATCGTTTCTTGTACTCAGCCTTGTATCCAATTCTCACTCTACGGGTAAGCCTTTGATACTCCTTCTAACTCCCAAACATGTTGTTTGAATTGCTTAAGTTGTTGGAAATGATTGCATTGCAGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGGACGTGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCAAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCCTAAATCTCCAATGCTGCCACCCCAATTATTCTTCTTACGGTTCGATTACTGCTTGTAATACAAGTCAGTTTTAAATAAAAAGGGAT

mRNA sequence

ATGGGGAAGAAGTTGATGTTTTTTGGTCTTCTTCTCATCTGCCTTGTATCCATTTCTGAGTCAGCTGTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGCATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGGAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGGCCTTGTATCCAATTCTCACTCTACGGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGGACGTGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCAAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCCTAAATCTCCAATGCTGCCACCCCAATTATTCTTCTTACGGTTCGATTACTGCTTGTAATACAAGTCAGTTTTAAATAAAAAGGGAT

Coding sequence (CDS)

ATGGGGAAGAAGTTGATGTTTTTTGGTCTTCTTCTCATCTGCCTTGTATCCATTTCTGAGTCAGCTGTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGCATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGGAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGGCCTTGTATCCAATTCTCACTCTACGGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGGACGTGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCAAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCCTAAATCTCCAATGCTGCCACCCCAATTATTCTTCTTACGGTTCGATTACTGCTTGTAA

Protein sequence

MGKKLMFFGLLLICLVSISESAVPSKTCRDSFHSSGVCMGWIGLSECYSESMGRHGDIPPRSCECIPTALYPILTLRINQRLAQKNSIQRGRVEIGLESQNATVNQWQGMEISHPRVASAFPKVRTLAFAVAMLCVPKSPMLPPQLFFLRFDYCL

Homology

[Close]

BLAST of CmaCh01G008410 vs. TrEMBL
Match: A0A0A0KSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1


Query: 5  LMFFGLLLICLVSIS---ESAVPSKTCRDSFHSSGVCMGWIGLSECYSESMGRHGDIPPR 64
          L     LL+CL SI+   +S   SKTC   F S+G C G  G+SECY E+M ++G+IPP+
Sbjct: 9  LPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPK 68

Query: 65 SCECIP 68
           CECIP
Sbjct: 69 GCECIP 74

[Close]

BLAST of CmaCh01G008410 vs. NCBI nr
Match: gi|700197513|gb|KGN52690.1| (hypothetical protein Csa_5G650550 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1


Query: 5  LMFFGLLLICLVSIS---ESAVPSKTCRDSFHSSGVCMGWIGLSECYSESMGRHGDIPPR 64
          L     LL+CL SI+   +S   SKTC   F S+G C G  G+SECY E+M ++G+IPP+
Sbjct: 9  LPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPK 68

Query: 65 SCECIP 68
           CECIP
Sbjct: 69 GCECIP 74

The following BLAST results are available for this feature:

BLAST of CmaCh01G008410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G008410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV3_CUCSA	2.7e-09	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1	[more]

BLAST of CmaCh01G008410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh01G008410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197513\|gb\|KGN52690.1\|	3.9e-09	50.00	hypothetical protein Csa_5G650550 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G008410.1	CmaCh01G008410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G008410	Csa5G650550	Cucumber (Chinese Long) v2	cmacuB483
CmaCh01G008410	CSPI05G31190	Wild cucumber (PI 183967)	cmacpiB486
CmaCh01G008410	CmoCh01G008810	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G008410	Lsi08G000490	Bottle gourd (USVL1VR-Ls)	cmalsiB453
CmaCh01G008410	Cp4.1LG02g10720	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G008410	CsaV3_5G040250	Cucumber (Chinese Long) v3	cmacucB0576
CmaCh01G008410	CsGy5G030510	Cucumber (Gy14) v2	cgybcmaB633

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G008410	Cucurbita moschata (Rifu)	cmacmoB438
CmaCh01G008410	Melon (DHL92) v3.5.1	cmameB383
CmaCh01G008410	Watermelon (Charleston Gray)	cmawcgB430
CmaCh01G008410	Watermelon (97103) v1	cmawmB417
CmaCh01G008410	Watermelon (97103) v1	cmawmB418
CmaCh01G008410	Cucurbita pepo (Zucchini)	cmacpeB510
CmaCh01G008410	Melon (DHL92) v3.6.1	cmamedB443
CmaCh01G008410	Watermelon (97103) v2	cmawmbB500
CmaCh01G008410	Wax gourd	cmawgoB0556
CmaCh01G008410	Cucurbita maxima (Rimu)	cmacmaB046
CmaCh01G008410	Cucumber (Gy14) v1	cgycmaB0661