CsaV3_5G040240 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G040240
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	SCR-like 10
Location	chr5 : 31665182 .. 31665397 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

mRNA sequence

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Coding sequence (CDS)

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Protein sequence

MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC

Homology

[Close]

BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_5G650540 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 4.2e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 72
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

[Close]

BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_5G650550 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CsaV3_5G040240 vs. TAIR10
Match: AT4G15735.1 (SCR-like 10)

HSP 1 Score: 42.7 bits (99), Expect = 1.1e-04
Identity = 20/62 (32.26%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 13  DQPRTCPVKFASTGTCQEPYGT--AGCYDEVMG-KYGNFPPKDCQCIPNGDNSRFCQCNI 72
           +QPR C  +    G+C +  GT    C+ + +G +  +  PK+C C P  +N R C+C++
Sbjct: 40  NQPRYCRSRQVFDGSCTD-RGTPRTTCFLDFLGARSASEMPKNCDCTPQPNNKRLCECSV 99

[Close]

BLAST of CsaV3_5G040240 vs. TrEMBL
Match: tr|A0A0A0KUV4|A0A0A0KUV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 72
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

[Close]

BLAST of CsaV3_5G040240 vs. TrEMBL
Match: tr|A0A0A0KSV3|A0A0A0KSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

The following BLAST results are available for this feature:

BLAST of CsaV3_5G040240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52689.1	4.2e-39	100.00	hypothetical protein Csa_5G650540 [Cucumis sativus]	[more]
KGN52690.1	3.7e-19	68.33	hypothetical protein Csa_5G650550 [Cucumis sativus]	[more]

BLAST of CsaV3_5G040240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15735.1	1.1e-04	32.26	SCR-like 10	[more]

BLAST of CsaV3_5G040240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G040240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUV4\|A0A0A0KUV4_CUCSA	2.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1	[more]
tr\|A0A0A0KSV3\|A0A0A0KSV3_CUCSA	2.5e-19	68.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

Vocabulary: **INTERPRO**
Term	Definition
IPR010682	SCRL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G040240.1	CsaV3_5G040240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010682	Plant self-incompatibility response	PFAM	PF06876	SCRL	coord: 14..68 e-value: 4.8E-5 score: 23.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G040240	CSPI05G31180	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G040240	CmoCh01G008820	Cucurbita moschata (Rifu)	cmocucB0565
CsaV3_5G040240	Cp4.1LG02g10720	Cucurbita pepo (Zucchini)	cpecucB0717
CsaV3_5G040240	CsGy5G030510	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G040240	Lsi08G000490	Bottle gourd (USVL1VR-Ls)	cuclsiB414
CsaV3_5G040240	MELO3C033532.2	Melon (DHL92) v3.6.1	cucmedB350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G040240	Silver-seed gourd	carcucB0391
CsaV3_5G040240	Cucumber (Gy14) v1	cgycucB357
CsaV3_5G040240	Cucurbita maxima (Rimu)	cmacucB0037
CsaV3_5G040240	Cucurbita maxima (Rimu)	cmacucB0576
CsaV3_5G040240	Cucurbita moschata (Rifu)	cmocucB0024
CsaV3_5G040240	Cucurbita pepo (Zucchini)	cpecucB0980
CsaV3_5G040240	Melon (DHL92) v3.5.1	cucmeB358
CsaV3_5G040240	Watermelon (Charleston Gray)	cucwcgB433
CsaV3_5G040240	Watermelon (Charleston Gray)	cucwcgB435
CsaV3_5G040240	Watermelon (97103) v1	cucwmB402
CsaV3_5G040240	Watermelon (97103) v2	cucwmbB420
CsaV3_5G040240	Wax gourd	cucwgoB480