CmoCh01G008820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G008820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein SCRL10, putative
Location	Cmo_Chr01 : 4814528 .. 4814866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGTTCATCATGAGTTTTGGTCTCTTATCGTTTCTTGTACTCAGCCTTGTATCCAGTTCTCACTCTATGGGTAAGCCTTTGATACTCCTTGTAACACGCAAATATGTTGTTTGAATCGCTTAAGTTGTTGGAAATGATTGCATTGCAGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGAACATGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCGAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCTTAA

mRNA sequence

ATGGAGAAGAAGTTCATCATGAGTTTTGGTCTCTTATCGTTTCTTGTACTCAGCCTTGTATCCAGTTCTCACTCTATGGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGAACATGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCGAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCTTAA

Coding sequence (CDS)

ATGGAGAAGAAGTTCATCATGAGTTTTGGTCTCTTATCGTTTCTTGTACTCAGCCTTGTATCCAGTTCTCACTCTATGGATCAATCAAAGACTTGCCCAGAAGAATTCCATTCAACGGGAACATGTGGAGATTGGACTGGAGTCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAGTGCATTCCCGAAGGTGCGGACTCTCGCATTTGCCGTTGCAATGCTGTGTGTCCTTAA

Homology

[Close]

BLAST of CmoCh01G008820 vs. TrEMBL
Match: A0A0A0KSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.2e-24
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MEKKFIMSFGLLSFLVLSLVSSSHSMD---QSKTCPEEFHSTGTCGDWTGVSECYSESMA 60
          MEKK  +S  LLSFL+L L S +HS D   QSKTCP +F STGTC    GVSECY E+MA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 RHGNIPPKGCECIPEGADSRICRCNAVC 86
          ++GNIPPKGCECIP+GA+SR C CN +C
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CmoCh01G008820 vs. TrEMBL
Match: A0A0A0KUV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-13
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 27 DQSKTCPEEFHSTGTCGDWTGVSECYSESMARHGNIPPKGCECIPEGADSRICRCNAVC 86
          DQ +TCP +F STGTC +  G + CY E M ++GN PPK C+CIP G +SR C+CN  C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

[Close]

BLAST of CmoCh01G008820 vs. NCBI nr
Match: gi|700197513|gb|KGN52690.1| (hypothetical protein Csa_5G650550 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MEKKFIMSFGLLSFLVLSLVSSSHSMD---QSKTCPEEFHSTGTCGDWTGVSECYSESMA 60
          MEKK  +S  LLSFL+L L S +HS D   QSKTCP +F STGTC    GVSECY E+MA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 RHGNIPPKGCECIPEGADSRICRCNAVC 86
          ++GNIPPKGCECIP+GA+SR C CN +C
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CmoCh01G008820 vs. NCBI nr
Match: gi|700197512|gb|KGN52689.1| (hypothetical protein Csa_5G650540 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 27 DQSKTCPEEFHSTGTCGDWTGVSECYSESMARHGNIPPKGCECIPEGADSRICRCNAVC 86
          DQ +TCP +F STGTC +  G + CY E M ++GN PPK C+CIP G +SR C+CN  C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

The following BLAST results are available for this feature:

BLAST of CmoCh01G008820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV3_CUCSA	8.2e-24	64.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1	[more]
A0A0A0KUV4_CUCSA	8.5e-13	54.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650540 PE=4 SV=1	[more]

BLAST of CmoCh01G008820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197513\|gb\|KGN52690.1\|	1.2e-23	64.77	hypothetical protein Csa_5G650550 [Cucumis sativus]	[more]
gi\|700197512\|gb\|KGN52689.1\|	1.2e-12	54.24	hypothetical protein Csa_5G650540 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010682	SCRL

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G008820.1	CmoCh01G008820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010682	Plant self-incompatibility response	PFAM	PF06876	SCRL	coord: 14..82 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G008820	Csa5G650540	Cucumber (Chinese Long) v2	cmocuB472
CmoCh01G008820	CSPI05G31180	Wild cucumber (PI 183967)	cmocpiB476
CmoCh01G008820	Lsi08G000490	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G008820	Cp4.1LG02g10720	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G008820	MELO3C033532.2	Melon (DHL92) v3.6.1	cmomedB431
CmoCh01G008820	CsaV3_5G040240	Cucumber (Chinese Long) v3	cmocucB0565
CmoCh01G008820	CsGy5G030510	Cucumber (Gy14) v2	cgybcmoB611

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G008820	Wax gourd	cmowgoB0553
CmoCh01G008820	Cucurbita moschata (Rifu)	cmocmoB021
CmoCh01G008820	Cucumber (Gy14) v1	cgycmoB0661
CmoCh01G008820	Cucurbita maxima (Rimu)	cmacmoB043
CmoCh01G008820	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G008820	Melon (DHL92) v3.5.1	cmomeB375
CmoCh01G008820	Watermelon (Charleston Gray)	cmowcgB429
CmoCh01G008820	Watermelon (Charleston Gray)	cmowcgB430
CmoCh01G008820	Watermelon (97103) v1	cmowmB411
CmoCh01G008820	Watermelon (97103) v1	cmowmB412
CmoCh01G008820	Cucurbita pepo (Zucchini)	cmocpeB468
CmoCh01G008820	Watermelon (97103) v2	cmowmbB482