CsaV3_5G039080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G039080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	F-box protein At3g07870-like
Location	chr5 : 30894824 .. 30895351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

mRNA sequence

ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

Coding sequence (CDS)

ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

Protein sequence

MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH

Homology

[Close]

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: KGN52568.1 (hypothetical protein Csa_5G643960 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 1.2e-106
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
           MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60

Query: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
           SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120

Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
           DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175

[Close]

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 2.2e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +E+S+Y+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68  MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234

[Close]

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_004141601.1 (PREDICTED: F-box protein At3g07870-like [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_5G643280 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.4e-29
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 14  CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
           CN KI C+DID   S V SF FEDD   S+++IV+SC+ LL I K I  D LCEGILNPM
Sbjct: 5   CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64

Query: 74  TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
           TNEF+E+P  + +      GFGF+P+TKQYKLFR       +  + +  M+I  F     
Sbjct: 65  TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124

Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
             ++WRHFK  P     HG YLNG+IYW+GK+  K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155

[Close]

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_004141602.1 (PREDICTED: F-box protein At3g07870-like [Cucumis sativus] >KGN52550.1 hypothetical protein Csa_5G643290 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 7.4e-29
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 14  CNPKIQCVDIDPKTSSVASFRFE-DDWS-SITIVNSCNGLLYICKFIFDSLCEGILNPMT 73
           CNPK+ C+DI+   + +ASF F+ +DW   I I+NSCNGLLYI K   ++ C GILNPMT
Sbjct: 86  CNPKMYCIDINRTNNLIASFVFDNNDWPYKIKILNSCNGLLYIHKVGDENFCNGILNPMT 145

Query: 74  NEF--VEIPPPDIELDVHC-VGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTFDNG 133
           NEF  +   P     D+ C  GFGF+ +TKQYKLF+     + + +  H  M++  F   
Sbjct: 146 NEFFILSTQPKVKNEDISCFYGFGFNLKTKQYKLFKA----IHDEEDSHLMMEVMRFGKN 205

Query: 134 H--KQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKE 164
              K+WRH   LPFV +  G YLNG+IYWIG++ E +
Sbjct: 206 EETKEWRHLTCLPFVFYCDGVYLNGVIYWIGRQKENK 238

[Close]

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_008460183.1 (PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 73/169 (43.20%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 15  NPKIQCVDIDPK-----------TSSVASFRFEDDWSSITIV-NSCNGLLYICKFIFDSL 74
           N K+ C+  D             T+   S  F+ DW  I++V NSCNGL++ICK  F + 
Sbjct: 71  NHKMHCIRFDTTTHLDFDLESEWTTKSPSLSFDGDWPFISLVDNSCNGLVFICKCAFFTR 130

Query: 75  CEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFR-TEPEILPNWKKCHYR-M 134
           C+GI NPMTNEF +IP  +++ D++    GFSP TKQYKLFR TE   L      +   M
Sbjct: 131 CDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNSSIM 190

Query: 135 DIFTF------DNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKE 164
           D+ TF      ++ H QWR    LP  + H+G YLNG+IYWIG K +KE
Sbjct: 191 DVLTFTRRSETNHNHSQWRRLHSLPLRI-HNGAYLNGVIYWIGTKEDKE 238

[Close]

BLAST of CsaV3_5G039080 vs. TAIR10
Match: AT1G55070.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 27/132 (20.45%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 44  IVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLF 103
           I++S +GL+   + I +     I NP+T ++V +P  +    ++    G+ P  K++K+ 
Sbjct: 129 ILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEAHATINYFAIGYDPINKRFKVL 188

Query: 104 RTEPEILPNWKKCHYRMDIFTFDNGHKQ--WRHFK-RLPFVV--FHHGQYLNGIIYWIGK 163
                     ++   +  + TF+ G +   WR  + R  +    +H G  + G++Y+   
Sbjct: 189 CVTSVHHGTGEEFDSQHQVLTFETGRRNLFWRKIQCRRHYYTHRYHKGICIKGVLYYAAT 248

Query: 164 KLEKEGGGCDIC 171
            ++   G   +C
Sbjct: 249 SMKPMLGPMIVC 260

[Close]

BLAST of CsaV3_5G039080 vs. TrEMBL
Match: tr|A0A0A0KSN0|A0A0A0KSN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 7.7e-107
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
           MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60

Query: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
           SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120

Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
           DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175

[Close]

BLAST of CsaV3_5G039080 vs. TrEMBL
Match: tr|A0A1S3CB99|A0A1S3CB99_CUCME (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.5e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +E+S+Y+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68  MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234

[Close]

BLAST of CsaV3_5G039080 vs. TrEMBL
Match: tr|A0A0A0KUJ1|A0A0A0KUJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 14  CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
           CN KI C+DID   S V SF FEDD   S+++IV+SC+ LL I K I  D LCEGILNPM
Sbjct: 5   CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64

Query: 74  TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
           TNEF+E+P  + +      GFGF+P+TKQYKLFR       +  + +  M+I  F     
Sbjct: 65  TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124

Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
             ++WRHFK  P     HG YLNG+IYW+GK+  K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155

[Close]

BLAST of CsaV3_5G039080 vs. TrEMBL
Match: tr|A0A0A0KSJ2|A0A0A0KSJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 14  CNPKIQCVDIDPKTSSVASFRFE-DDWS-SITIVNSCNGLLYICKFIFDSLCEGILNPMT 73
           CNPK+ C+DI+   + +ASF F+ +DW   I I+NSCNGLLYI K   ++ C GILNPMT
Sbjct: 86  CNPKMYCIDINRTNNLIASFVFDNNDWPYKIKILNSCNGLLYIHKVGDENFCNGILNPMT 145

Query: 74  NEF--VEIPPPDIELDVHC-VGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTFDNG 133
           NEF  +   P     D+ C  GFGF+ +TKQYKLF+     + + +  H  M++  F   
Sbjct: 146 NEFFILSTQPKVKNEDISCFYGFGFNLKTKQYKLFKA----IHDEEDSHLMMEVMRFGKN 205

Query: 134 H--KQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKE 164
              K+WRH   LPFV +  G YLNG+IYWIG++ E +
Sbjct: 206 EETKEWRHLTCLPFVFYCDGVYLNGVIYWIGRQKENK 238

[Close]

BLAST of CsaV3_5G039080 vs. TrEMBL
Match: tr|A0A1S3CCE7|A0A1S3CCE7_CUCME (uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 73/169 (43.20%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 15  NPKIQCVDIDPK-----------TSSVASFRFEDDWSSITIV-NSCNGLLYICKFIFDSL 74
           N K+ C+  D             T+   S  F+ DW  I++V NSCNGL++ICK  F + 
Sbjct: 71  NHKMHCIRFDTTTHLDFDLESEWTTKSPSLSFDGDWPFISLVDNSCNGLVFICKCAFFTR 130

Query: 75  CEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFR-TEPEILPNWKKCHYR-M 134
           C+GI NPMTNEF +IP  +++ D++    GFSP TKQYKLFR TE   L      +   M
Sbjct: 131 CDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNSSIM 190

Query: 135 DIFTF------DNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKE 164
           D+ TF      ++ H QWR    LP  + H+G YLNG+IYWIG K +KE
Sbjct: 191 DVLTFTRRSETNHNHSQWRRLHSLPLRI-HNGAYLNGVIYWIGTKEDKE 238

The following BLAST results are available for this feature:

BLAST of CsaV3_5G039080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52568.1	1.2e-106	100.00	hypothetical protein Csa_5G643960 [Cucumis sativus]	[more]
XP_008459707.1	2.2e-81	83.23	PREDICTED: F-box protein At3g07870-like [Cucumis melo]	[more]
XP_004141601.1	4.4e-29	49.03	PREDICTED: F-box protein At3g07870-like [Cucumis sativus] >KGN52549.1 hypothetic...	[more]
XP_004141602.1	7.4e-29	45.86	PREDICTED: F-box protein At3g07870-like [Cucumis sativus] >KGN52550.1 hypothetic...	[more]
XP_008460183.1	1.1e-27	43.20	PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]	[more]

BLAST of CsaV3_5G039080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55070.1	1.6e-04	20.45	F-box and associated interaction domains-containing protein	[more]

BLAST of CsaV3_5G039080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G039080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSN0\|A0A0A0KSN0_CUCSA	7.7e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1	[more]
tr\|A0A1S3CB99\|A0A1S3CB99_CUCME	1.5e-81	83.23	F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1	[more]
tr\|A0A0A0KUJ1\|A0A0A0KUJ1_CUCSA	2.9e-29	49.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 SV=1	[more]
tr\|A0A0A0KSJ2\|A0A0A0KSJ2_CUCSA	4.9e-29	45.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 SV=1	[more]
tr\|A0A1S3CCE7\|A0A1S3CCE7_CUCME	7.1e-28	43.20	uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017451	F-box-assoc_interact_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G039080.1	CsaV3_5G039080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 46..161 e-value: 4.7E-15 score: 53.5
None	No IPR available	PANTHER	PTHR31790	FAMILY NOT NAMED	coord: 31..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G039080	CSPI05G29960	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G039080	Cucsa.238160	Cucumber (Gy14) v1	cgycucB357
CsaV3_5G039080	MELO3C033559.2	Melon (DHL92) v3.6.1	cucmedB350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G039080	Cucurbita pepo (Zucchini)	cpecucB0050
CsaV3_5G039080	Cucurbita pepo (Zucchini)	cpecucB0210
CsaV3_5G039080	Cucurbita pepo (Zucchini)	cpecucB0517
CsaV3_5G039080	Wild cucumber (PI 183967)	cpicucB298
CsaV3_5G039080	Bottle gourd (USVL1VR-Ls)	cuclsiB378
CsaV3_5G039080	Melon (DHL92) v3.5.1	cucmeB354
CsaV3_5G039080	Melon (DHL92) v3.5.1	cucmeB358
CsaV3_5G039080	Melon (DHL92) v3.5.1	cucmeB391
CsaV3_5G039080	Melon (DHL92) v3.6.1	cucmedB346
CsaV3_5G039080	Melon (DHL92) v3.6.1	cucmedB386
CsaV3_5G039080	Watermelon (Charleston Gray)	cucwcgB376
CsaV3_5G039080	Watermelon (97103) v1	cucwmB432
CsaV3_5G039080	Watermelon (97103) v1	cucwmB462
CsaV3_5G039080	Watermelon (97103) v2	cucwmbB374
CsaV3_5G039080	Wax gourd	cucwgoB474
CsaV3_5G039080	Wax gourd	cucwgoB536
CsaV3_5G039080	Cucumber (Chinese Long) v3	cuccucB198
CsaV3_5G039080	Silver-seed gourd	carcucB0022
CsaV3_5G039080	Silver-seed gourd	carcucB0296
CsaV3_5G039080	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G039080	Cucumber (Gy14) v1	cgycucB444
CsaV3_5G039080	Cucurbita maxima (Rimu)	cmacucB0353
CsaV3_5G039080	Cucurbita maxima (Rimu)	cmacucB0860
CsaV3_5G039080	Cucurbita moschata (Rifu)	cmocucB0348
CsaV3_5G039080	Cucurbita moschata (Rifu)	cmocucB0493
CsaV3_5G039080	Cucurbita moschata (Rifu)	cmocucB0846