CsaV3_5G037370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G037370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 29651570 .. 29651936 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAAGTTTCTTGGTCTTCTTGTTTCTTTTCTTGTCCTCAAAGAGATTGTTTGAGTTCTCTGATGGATAATGATCTGCCTGTCATTCTGTACTGCAATGTTGAATTTCTTGTTGTTTCTACTTTGTCTGTCTTTGAAGTTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

mRNA sequence

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAATTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

Coding sequence (CDS)

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAATTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

Protein sequence

MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVFESADDIEVISICFTVLG
Homology
[Close]
BLAST of CsaV3_5G037370 vs. NCBI nr
Match: KGN52393.1 (hypothetical protein Csa_5G630950 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-17
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSC 50
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLF  C
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDC 49

[Close]
BLAST of CsaV3_5G037370 vs. TrEMBL
Match: tr|A0A0A0KS19|A0A0A0KS19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSC 50
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLF  C
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDC 49

The following BLAST results are available for this feature:
BLAST of CsaV3_5G037370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52393.13.8e-1795.92hypothetical protein Csa_5G630950 [Cucumis sativus][more]
BLAST of CsaV3_5G037370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G037370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G037370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KS19|A0A0A0KS19_CUCSA2.5e-1795.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G037370.1CsaV3_5G037370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G037370CSPI05G28300Wild cucumber (PI 183967)cpicucB284
CsaV3_5G037370Cp4.1LG13g08890Cucurbita pepo (Zucchini)cpecucB0210
CsaV3_5G037370Cla010385Watermelon (97103) v1cucwmB388
CsaV3_5G037370ClCG09G018700Watermelon (Charleston Gray)cucwcgB363
CsaV3_5G037370Cla97C09G180200Watermelon (97103) v2cucwmbB425
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G037370Cucumber (Chinese Long) v3cuccucB041
CsaV3_5G037370Cucumber (Chinese Long) v3cuccucB134
CsaV3_5G037370Silver-seed gourdcarcucB0296
CsaV3_5G037370Silver-seed gourdcarcucB0725
CsaV3_5G037370Cucumber (Gy14) v2cgybcucB043
CsaV3_5G037370Cucumber (Gy14) v2cgybcucB232
CsaV3_5G037370Cucumber (Gy14) v1cgycucB113
CsaV3_5G037370Cucumber (Gy14) v1cgycucB244
CsaV3_5G037370Cucurbita maxima (Rimu)cmacucB0262
CsaV3_5G037370Cucurbita maxima (Rimu)cmacucB0353
CsaV3_5G037370Cucurbita maxima (Rimu)cmacucB0503
CsaV3_5G037370Cucurbita maxima (Rimu)cmacucB0860
CsaV3_5G037370Cucurbita moschata (Rifu)cmocucB0250
CsaV3_5G037370Cucurbita moschata (Rifu)cmocucB0348
CsaV3_5G037370Cucurbita moschata (Rifu)cmocucB0846
CsaV3_5G037370Cucurbita pepo (Zucchini)cpecucB0517
CsaV3_5G037370Wild cucumber (PI 183967)cpicucB049
CsaV3_5G037370Wild cucumber (PI 183967)cpicucB175
CsaV3_5G037370Bottle gourd (USVL1VR-Ls)cuclsiB371
CsaV3_5G037370Bottle gourd (USVL1VR-Ls)cuclsiB375
CsaV3_5G037370Melon (DHL92) v3.5.1cucmeB358
CsaV3_5G037370Melon (DHL92) v3.5.1cucmeB394
CsaV3_5G037370Melon (DHL92) v3.6.1cucmedB350
CsaV3_5G037370Melon (DHL92) v3.6.1cucmedB389
CsaV3_5G037370Watermelon (Charleston Gray)cucwcgB366
CsaV3_5G037370Watermelon (Charleston Gray)cucwcgB391
CsaV3_5G037370Watermelon (97103) v2cucwmbB358
CsaV3_5G037370Wax gourdcucwgoB482