CSPI05G28300 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G28300
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 26772689 .. 26772978 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAAGTTTCTTGGTCTTCTTGTTTCTTTTCTTGTCCTCAAAGAGATTGTTTGAGTTCTCTGATGGATAATGATCTGCCTGTCATTCTGTACTGCAATGTTGAATTTCTTGTTGTTTCTACTTTGTCTGTCTTTGAAGTTCCTGTTTCATCATGA

mRNA sequence

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAAAGATTGTTTGAGTTCTCTGATGGATAATGATCTGCCTGTCATTCTGTACTGCAATGTTGAATTTCTTGTTGTTTCTACTTTGTCTGTCTTTGAAGTTCCTGTTTCATCATGA

Coding sequence (CDS)

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAAAGATTGTTTGAGTTCTCTGATGGATAATGATCTGCCTGTCATTCTGTACTGCAATGTTGAATTTCTTGTTGTTTCTACTTTGTCTGTCTTTGAAGTTCCTGTTTCATCATGA
Homology
[Close]
BLAST of CSPI05G28300 vs. TrEMBL
Match: A0A0A0KS19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.7e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV 60
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV 60

Query: 61 ILYCNVEFLVVSTLSVFEVPVSS 84
          ILYCNVEFLVVSTLSVFEVPVSS
Sbjct: 61 ILYCNVEFLVVSTLSVFEVPVSS 83

[Close]
BLAST of CSPI05G28300 vs. NCBI nr
Match: gi|700197216|gb|KGN52393.1| (hypothetical protein Csa_5G630950 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV 60
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSLMDNDLPV 60

Query: 61 ILYCNVEFLVVSTLSVFEVPVSS 84
          ILYCNVEFLVVSTLSVFEVPVSS
Sbjct: 61 ILYCNVEFLVVSTLSVFEVPVSS 83

The following BLAST results are available for this feature:
BLAST of CSPI05G28300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G28300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS19_CUCSA9.7e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630950 PE=4 SV=1[more]
BLAST of CSPI05G28300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G28300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197216|gb|KGN52393.1|1.4e-37100.00hypothetical protein Csa_5G630950 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G28300.1CSPI05G28300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G28300Cla010385Watermelon (97103) v1cpiwmB370
CSPI05G28300Csa5G630950Cucumber (Chinese Long) v2cpicuB239
CSPI05G28300ClCG09G018700Watermelon (Charleston Gray)cpiwcgB356
CSPI05G28300CsaV3_5G037370Cucumber (Chinese Long) v3cpicucB284
CSPI05G28300Cla97C09G180200Watermelon (97103) v2cpiwmbB429
CSPI05G28300Cp4.1LG13g08890Cucurbita pepo (Zucchini)cpecpiB177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G28300Wax gourdcpiwgoB473
CSPI05G28300Wild cucumber (PI 183967)cpicpiB036
CSPI05G28300Cucumber (Gy14) v1cgycpiB110
CSPI05G28300Cucumber (Gy14) v1cgycpiB236
CSPI05G28300Cucurbita maxima (Rimu)cmacpiB304
CSPI05G28300Cucurbita maxima (Rimu)cmacpiB730
CSPI05G28300Cucurbita moschata (Rifu)cmocpiB216
CSPI05G28300Cucurbita moschata (Rifu)cmocpiB296
CSPI05G28300Cucurbita moschata (Rifu)cmocpiB722
CSPI05G28300Cucumber (Chinese Long) v2cpicuB219
CSPI05G28300Cucumber (Chinese Long) v2cpicuB232
CSPI05G28300Melon (DHL92) v3.5.1cpimeB349
CSPI05G28300Melon (DHL92) v3.5.1cpimeB382
CSPI05G28300Watermelon (Charleston Gray)cpiwcgB384
CSPI05G28300Watermelon (Charleston Gray)cpiwcgB360
CSPI05G28300Cucurbita pepo (Zucchini)cpecpiB414
CSPI05G28300Bottle gourd (USVL1VR-Ls)cpilsiB355
CSPI05G28300Bottle gourd (USVL1VR-Ls)cpilsiB352
CSPI05G28300Melon (DHL92) v3.6.1cpimedB339
CSPI05G28300Melon (DHL92) v3.6.1cpimedB377
CSPI05G28300Cucumber (Gy14) v2cgybcpiB035
CSPI05G28300Cucumber (Gy14) v2cgybcpiB137
CSPI05G28300Cucumber (Gy14) v2cgybcpiB225
CSPI05G28300Silver-seed gourdcarcpiB0297
CSPI05G28300Silver-seed gourdcarcpiB0722
CSPI05G28300Cucumber (Chinese Long) v3cpicucB259
CSPI05G28300Cucumber (Chinese Long) v3cpicucB277
CSPI05G28300Watermelon (97103) v2cpiwmbB357