CsaV3_5G028710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028710
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 23845960 .. 23847083 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAATATTGTTGTATGATTATAATTATTGAGGGAATGTGAAAGCTTATTAAGTAAAAGCCTTATTAATTCGTTGGTTGTTGAATAAGCTTCCAGCTTCTGTTCACACTTCTGCTTCACTTAGATTCTAAATATCCACTCATTTAATTATTTTAACAAAAATTACATAATATAATCAACCAAATTAAAATAGTATTAGATAAATAAATTTAAAAAAAAAAAGAAAAGAAAAAAAAGATACGAATAATTGTCTATTATTAAACACCATAGAATGTGCAAATTTTACAGCAGTAAATGTAAAAAAGAAAAAAGAAAATCCGAGAGGATTCTTCAAAAAGAAAGGGGAGAAAGGCTACAAATATATATAACAAAAATCTAAAAAGAAAAAGTAAAGCCTATGGTCAAAACTGCCATAAGATAAAAATAAGAGGCGACCCCTAAAAAATTGTAAAAAAAGAAAGAAAAAATGATATTCTGAAAAATGTAAAATAAGAAAAGGAAAGGAAAGGAAGGGATTGGAAGACGTGGCAGGAGCGGAGCCGTGGGATCATCGAAGAGAGAACCAGGCGATAACATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAAACCCATTATTGAAAAATTGTTTGAGAAATCTTTGAGAGAGAAAGGATATAGAAATGAATTGGGTTTGAGGGAAAAGGGAATTTGGGTTCATATGTGAGAGAGAGAGAGAAAGAGAAAGAGAAGAAAGAGATGTGTGTGGGTTTTGTGC

mRNA sequence

ATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAA

Coding sequence (CDS)

ATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAA

Protein sequence

MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEERERMVGEVIELCV
Homology
[Close]
BLAST of CsaV3_5G028710 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_5G576680 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60
           MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE
Sbjct: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60

Query: 61  TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX 120
           TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXRMVGEVIELCV 134
           XXRMVGEVIELCV
Sbjct: 121 XXRMVGEVIELCV 133

[Close]
BLAST of CsaV3_5G028710 vs. TrEMBL
Match: tr|A0A0A0KUZ6|A0A0A0KUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.8e-35
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60
           MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE
Sbjct: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60

Query: 61  TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX 120
           TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TDDAIGGXXXXXXXXXXXXXXAIEMEMVGKRGEIRTVVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXRMVGEVIELCV 134
           XXRMVGEVIELCV
Sbjct: 121 XXRMVGEVIELCV 133

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51526.11.2e-34100.00hypothetical protein Csa_5G576680 [Cucumis sativus][more]
BLAST of CsaV3_5G028710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUZ6|A0A0A0KUZ6_CUCSA7.8e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028710.1CsaV3_5G028710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..125

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028710Cla003900Watermelon (97103) v1cucwmB441
CsaV3_5G028710ClCG01G005970Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028710Lsi09G006320Bottle gourd (USVL1VR-Ls)cuclsiB352
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028710Bottle gourd (USVL1VR-Ls)cuclsiB391
CsaV3_5G028710Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028710Melon (DHL92) v3.5.1cucmeB376
CsaV3_5G028710Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028710Melon (DHL92) v3.6.1cucmedB366
CsaV3_5G028710Watermelon (Charleston Gray)cucwcgB412
CsaV3_5G028710Watermelon (97103) v1cucwmB424
CsaV3_5G028710Watermelon (97103) v2cucwmbB359
CsaV3_5G028710Watermelon (97103) v2cucwmbB394
CsaV3_5G028710Wax gourdcucwgoB461
CsaV3_5G028710Wax gourdcucwgoB519
CsaV3_5G028710Cucumber (Chinese Long) v3cuccucB199
CsaV3_5G028710Silver-seed gourdcarcucB0833
CsaV3_5G028710Silver-seed gourdcarcucB0887
CsaV3_5G028710Silver-seed gourdcarcucB1098
CsaV3_5G028710Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028710Cucumber (Gy14) v2cgybcucB239
CsaV3_5G028710Cucumber (Gy14) v1cgycucB428
CsaV3_5G028710Cucumber (Gy14) v1cgycucB440
CsaV3_5G028710Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028710Cucurbita maxima (Rimu)cmacucB0497
CsaV3_5G028710Cucurbita maxima (Rimu)cmacucB0875
CsaV3_5G028710Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028710Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028710Cucurbita moschata (Rifu)cmocucB0486
CsaV3_5G028710Cucurbita moschata (Rifu)cmocucB0863
CsaV3_5G028710Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028710Cucurbita pepo (Zucchini)cpecucB0053
CsaV3_5G028710Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028710Cucurbita pepo (Zucchini)cpecucB0539
CsaV3_5G028710Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G028710Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028710Wild cucumber (PI 183967)cpicucB302