ClCG01G005970 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G005970
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 6579475 .. 6579801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Protein sequence

MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRIVVGVSVAVGEEAIEMKVMGERGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL
Homology
[Close]
BLAST of ClCG01G005970 vs. TrEMBL
Match: A0A0A0KUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-28
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 1 

Query: 1   MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRI-VVGVSVAVGEEAIEMKVMGE 60
           MVKPAV+AV +E+VAAG+ ADEV G ERGETDDA+GG + VVGV V VGE+AIEM+++G+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL 109
           RG IR   TVVGGG  GG   AE+ +EIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEGG---AEEREEIGKEREEEERERMVGEVIELCV 133

[Close]
BLAST of ClCG01G005970 vs. NCBI nr
Match: gi|700196349|gb|KGN51526.1| (hypothetical protein Csa_5G576680 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-28
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 1 

Query: 1   MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRI-VVGVSVAVGEEAIEMKVMGE 60
           MVKPAV+AV +E+VAAG+ ADEV G ERGETDDA+GG + VVGV V VGE+AIEM+++G+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL 109
           RG IR   TVVGGG  GG   AE+ +EIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEGG---AEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:
BLAST of ClCG01G005970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUZ6_CUCSA1.8e-2865.14Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1[more]
BLAST of ClCG01G005970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196349|gb|KGN51526.1|2.6e-2865.14hypothetical protein Csa_5G576680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G005970.1ClCG01G005970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G005970Cla003900Watermelon (97103) v1wcgwmB143
ClCG01G005970Lsi09G006320Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G005970CsaV3_5G028710Cucumber (Chinese Long) v3cucwcgB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G005970Wax gourdwcgwgoB191
ClCG01G005970Wax gourdwcgwgoB249
ClCG01G005970Watermelon (Charleston Gray)wcgwcgB102
ClCG01G005970Cucumber (Gy14) v1cgywcgB484
ClCG01G005970Cucumber (Gy14) v1cgywcgB494
ClCG01G005970Cucurbita maxima (Rimu)cmawcgB257
ClCG01G005970Cucurbita maxima (Rimu)cmawcgB351
ClCG01G005970Cucurbita maxima (Rimu)cmawcgB634
ClCG01G005970Cucurbita maxima (Rimu)cmawcgB640
ClCG01G005970Cucurbita moschata (Rifu)cmowcgB245
ClCG01G005970Cucurbita moschata (Rifu)cmowcgB347
ClCG01G005970Cucurbita moschata (Rifu)cmowcgB636
ClCG01G005970Cucurbita moschata (Rifu)cmowcgB642
ClCG01G005970Wild cucumber (PI 183967)cpiwcgB382
ClCG01G005970Wild cucumber (PI 183967)cpiwcgB388
ClCG01G005970Cucumber (Chinese Long) v2cuwcgB369
ClCG01G005970Cucumber (Chinese Long) v2cuwcgB372
ClCG01G005970Melon (DHL92) v3.5.1mewcgB019
ClCG01G005970Melon (DHL92) v3.5.1mewcgB054
ClCG01G005970Watermelon (97103) v1wcgwmB139
ClCG01G005970Cucurbita pepo (Zucchini)cpewcgB024
ClCG01G005970Cucurbita pepo (Zucchini)cpewcgB169
ClCG01G005970Cucurbita pepo (Zucchini)cpewcgB370
ClCG01G005970Bottle gourd (USVL1VR-Ls)lsiwcgB271
ClCG01G005970Cucumber (Gy14) v2cgybwcgB337
ClCG01G005970Cucumber (Gy14) v2cgybwcgB340
ClCG01G005970Melon (DHL92) v3.6.1medwcgB017
ClCG01G005970Melon (DHL92) v3.6.1medwcgB053
ClCG01G005970Silver-seed gourdcarwcgB0767
ClCG01G005970Silver-seed gourdcarwcgB0811
ClCG01G005970Silver-seed gourdcarwcgB1022
ClCG01G005970Cucumber (Chinese Long) v3cucwcgB390
ClCG01G005970Watermelon (97103) v2wcgwmbB089
ClCG01G005970Watermelon (97103) v2wcgwmbB097
ClCG01G005970Watermelon (97103) v2wcgwmbB111