CsaV3_5G028600 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G028600
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	extensin-like
Location	chr5 : 23705017 .. 23707251 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTGATGAATGAAATAGATAGATTCGATACTACTAAATAAAAAAACTAAAATTGGAGAATTCATGAGAATAAAGATGACATTAAAAAAAAAAGAAAAAACTATTCCCTTAGCTGGGAATCCAAACACTCCTTTTTCTCTCTCTCTTAAGTCTTCAAAGTTTTATACAGTTTCCATGCACCCATTCATCTAACTAATTTCCCACTCTTTCTTCTCTCTAGAAAAATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTCCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGTCACCGTCCGCCGCCTCGATGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAATCCCCCGTCTCCGCCGCCGCCGGTTGTGTACCCCTCACCACCGCCGCCGTCTCCTCCGCCACCCGATGTCGTCCCCTACTACTCTCCCCCACCCCCCAAGAAGAAAGAGCCCAAAAGCCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAACTGGACCTCCCGGCGACCTCTATCCCATCGACCAGGGTTACAACGCCGCCGGGCGGAGATCCGCCGCAACCGTGGTTGGGGTTGTTCTGGCCGGGCTTCTGTTGGTCGTTTAGAAACGGTGGGATCTCAATAGAATTTCTCGTAAGGTAAAACAAATTTCCCCGTACGAGAAACTTTTTAATTTGGGATATTATTGTTTTAGAATTTTTATGGTTCATCATCATAATTTTCTTGTCCAATAATTTTGTAATTTGTACCAAATATTTAATTTGTCCAGAAATTTGTGATAAGAAAAAGAAGAGAAGATATCTGTGTTTTTGTTTAGCAATTTATTTTCCTCTCCTTTTTCAATGAAAATATGGAAAATTAGGCCAAAATTATTCAGTGCGATCATTTTCTCTTTTTCAATATGAATGCAAATTTGGATGATTCGAATTCAATCGCTATCGTCGCACAACCATATAATTGAGTTTTGTGCTGTAATAATTATACTTAAAACTGATTACATTTTTATTGTTTAATTTAAAATATTCATAATGAATTCATTTTTTATTTTGTAGTGACAGAGCCACGATATTTTTTTCCTTCATAATTAATAGAAATATGTCTTATTTATTTGTTTATTTATGAGAGTGATATAACCTTGGATTATCTAGAGTCATCCATTAACAGATGAATACGAAAATTAATTTGTCATCTGGGCCCCATTGGTTGTTAAAATGCGACTTCCCATCTTCCTTCTAATTAATTAATAAATATTCCTCAACGGCGTCGTTTTCTCCAAAAGCAAAAAGCTCCTTTTTCCCTCACACCTAAGTTTGTTACAAAAACCTTGAATATCAATGGAACAATTGTCCCTACAATTCACTCACATAAATTTTATTTTATTATTACATCATATTAATTCTAATTTTAAATGTTGTATTCATTTCTCTCTAATCAAAAATCAAAATCTTAGTACTTTGAAAGATGGCAAGTCTAATAATTTTTTTTGTTTATTTACTAAGTAGTTTATTCTTGTATTTATCCTTGAAAAAAAAAAATCAAACAAACGTGTATGGAGTGGAATTAAATTAAATGGATCTAGAAAGTAAGAAAAAGATTGTTAGTGGAATAGAAGGGATAGCAGCGGGCAAGAGAAAGTGGTAGAGGGCAAAAAGAGTAAATTACAATGTGGGGCTAACGAATGCTATAATGACACGTGTGGAAGTTCAAATTCCGAGACGGAAATGCGTAGTGTACTTGGAAAGTGGGGACCCGATCCCGAGCCATTGGATCGGGTGTCAGAGAGTTCTACGAGATGCGATAAGATCAGGTGTAGGGTTATTTTTGACTTCCGAGGATGATCATCTTCGGTTTCACCAAAGTACGGCCCCACTGGATTTCTTTCTCCCTAAACTCTCCAATTTCATCTTTTTTCACTCTGTTTTTTCTTTTATGATATAATATTACACGTCGTTACCCACATGTCTCTTCATCGACTAAAAACTAAAAACTATATTTTCTTTTTTCTTTTCTAAGGCATTGCAATATGACACGTGTCGTATATTCTAATTAAAGAAAAGTCCAACTTCTTCACCTCTAACTCTAAATTTATCAAAACTTTCATACACTTGTAACTGATGTTTAGGTAAATGATGTAATCATAACTCTATATTGGGAAAGACGTGTTATTTTCCATAAGTTCTCTCATATGAAAATTG

mRNA sequence

ATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTCCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGTCACCGTCCGCCGCCTCGATGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAATCCCCCGTCTCCGCCGCCGCCGGTTGTGTACCCCTCACCACCGCCGCCGTCTCCTCCGCCACCCGATGTCGTCCCCTACTACTCTCCCCCACCCCCCAAGAAGAAAGAGCCCAAAAGCCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAACTGGACCTCCCGGCGACCTCTATCCCATCGACCAGGGTTACAACGCCGCCGGGCGGAGATCCGCCGCAACCGTGGTTGGGGTTGTTCTGGCCGGGCTTCTGTTGGTCGTTTAG

Coding sequence (CDS)

ATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTCCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGTCACCGTCCGCCGCCTCGATGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAATCCCCCGTCTCCGCCGCCGCCGGTTGTGTACCCCTCACCACCGCCGCCGTCTCCTCCGCCACCCGATGTCGTCCCCTACTACTCTCCCCCACCCCCCAAGAAGAAAGAGCCCAAAAGCCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAACTGGACCTCCCGGCGACCTCTATCCCATCGACCAGGGTTACAACGCCGCCGGGCGGAGATCCGCCGCAACCGTGGTTGGGGTTGTTCTGGCCGGGCTTCTGTTGGTCGTTTAG

Protein sequence

MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPGDLYPIDQGYNAAGRRSAATVVGVVLAGLLLVV

Homology

[Close]

BLAST of CsaV3_5G028600 vs. NCBI nr
Match: XP_004150475.1 (PREDICTED: leucine-rich repeat extensin-like protein 6 [Cucumis sativus] >KGN51515.1 hypothetical protein Csa_5G571580 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60
           MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX
Sbjct: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120

Query: 121 RRSAATVVGVVLAGLLLVV 140
           RRSAATVVGVVLAGLLLVV
Sbjct: 121 RRSAATVVGVVLAGLLLVV 139

[Close]

BLAST of CsaV3_5G028600 vs. NCBI nr
Match: XP_008467156.1 (PREDICTED: extensin-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 134/139 (96.40%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60
           MLPLKFLLFLNFLLLISPSSALTS TVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX
Sbjct: 1   MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQ YNAAG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQNYNAAG 120

Query: 121 RRS-AATVVGVVLAGLLLV 139
           RRS AA  VGVVLAGLLLV
Sbjct: 121 RRSAAAAAVGVVLAGLLLV 139

[Close]

BLAST of CsaV3_5G028600 vs. NCBI nr
Match: XP_023550897.1 (extensin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 100 MYITGPPGDLYPIDQGYNAAGRRSAATVVGVVLAGLLLV 139
           MYITGPPGDLYPIDQ +NAAGRRS A V+ +VLAGLLLV
Sbjct: 103 MYITGPPGDLYPIDQNFNAAGRRSTAAVIWLVLAGLLLV 141

[Close]

BLAST of CsaV3_5G028600 vs. NCBI nr
Match: XP_022939204.1 (formin-like protein 3 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 4.4e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 100 MYITGPPGDLYPIDQGYNAAGRRSAATVVGVVLAGLLLV 139
           MYITGPPGDLYPIDQ +NAAGRRS A VV ++LAGLLLV
Sbjct: 127 MYITGPPGDLYPIDQNFNAAGRRSTAAVVWLLLAGLLLV 165

[Close]

BLAST of CsaV3_5G028600 vs. NCBI nr
Match: XP_022152315.1 (acrosin [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 103/147 (70.07%), Postives = 108/147 (73.47%), Query Frame = 0


Query: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDD-----TTTPTDPNVKCAPCEQXXXXXXX 60
           MLPLK LLFLN LL              R  D      +T  DP VKCAPC+QXXXXXXX
Sbjct: 1   MLPLKSLLFLNLLLXXXXXXXXXXXXXXRFLDEAPAVPSTTGDPTVKCAPCDQXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSF YITGPPGDLYPIDQ 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFTYITGPPGDLYPIDQD 120

Query: 121 YNAAGR----RSAATVVGVVLAGLLLV 139
           YNAA R     +AA VVG+ L GL +V
Sbjct: 121 YNAAARTLTSAAAAAVVGLGLVGLFVV 147

[Close]

BLAST of CsaV3_5G028600 vs. TAIR10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 18/41 (43.90%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 98  SFMYITGPPGDLYPIDQGYNAAGRRSAATV--VGVVLAGLL 137
           +F+YITGPPG+LYP+D+ + AA  +S   V   G++  G++
Sbjct: 99  NFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIM 139

[Close]

BLAST of CsaV3_5G028600 vs. TrEMBL
Match: tr|A0A0A0KPJ1|A0A0A0KPJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571580 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-34
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60
           MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX
Sbjct: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120

Query: 121 RRSAATVVGVVLAGLLLVV 140
           RRSAATVVGVVLAGLLLVV
Sbjct: 121 RRSAATVVGVVLAGLLLVV 139

[Close]

BLAST of CsaV3_5G028600 vs. TrEMBL
Match: tr|A0A1S3CT22|A0A1S3CT22_CUCME (extensin-like OS=Cucumis melo OX=3656 GN=LOC103504576 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 134/139 (96.40%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60
           MLPLKFLLFLNFLLLISPSSALTS TVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX
Sbjct: 1   MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQGYNAAG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQ YNAAG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFMYITGPPGDLYPIDQNYNAAG 120

Query: 121 RRS-AATVVGVVLAGLLLV 139
           RRS AA  VGVVLAGLLLV
Sbjct: 121 RRSAAAAAVGVVLAGLLLV 139

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150475.1	3.6e-34	100.00	PREDICTED: leucine-rich repeat extensin-like protein 6 [Cucumis sativus] >KGN515...	[more]
XP_008467156.1	3.1e-30	96.40	PREDICTED: extensin-like [Cucumis melo]	[more]
XP_023550897.1	2.6e-08	82.05	extensin-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939204.1	4.4e-08	82.05	formin-like protein 3 [Cucurbita moschata]	[more]
XP_022152315.1	5.8e-08	70.07	acrosin [Momordica charantia]	[more]

BLAST of CsaV3_5G028600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23040.1	3.6e-04	43.90	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CsaV3_5G028600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G028600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPJ1\|A0A0A0KPJ1_CUCSA	2.4e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571580 PE=4 SV=1	[more]
tr\|A0A1S3CT22\|A0A1S3CT22_CUCME	2.1e-30	96.40	extensin-like OS=Cucumis melo OX=3656 GN=LOC103504576 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028600.1	CsaV3_5G028600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..104
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 9..137
None	No IPR available	PANTHER	PTHR35094:SF1	SUBFAMILY NOT NAMED	coord: 9..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G028600	CSPI05G19770	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G028600	CmaCh15G009440	Cucurbita maxima (Rimu)	cmacucB0355
CsaV3_5G028600	CmaCh04G020920	Cucurbita maxima (Rimu)	cmacucB0888
CsaV3_5G028600	CmoCh15G009820	Cucurbita moschata (Rifu)	cmocucB0350
CsaV3_5G028600	CmoCh04G021940	Cucurbita moschata (Rifu)	cmocucB0878
CsaV3_5G028600	Cp4.1LG13g03710	Cucurbita pepo (Zucchini)	cpecucB0212
CsaV3_5G028600	Cp4.1LG00g02960	Cucurbita pepo (Zucchini)	cpecucB0016
CsaV3_5G028600	Carg26356	Silver-seed gourd	carcucB0217
CsaV3_5G028600	Carg27267	Silver-seed gourd	carcucB0361
CsaV3_5G028600	Cla003911	Watermelon (97103) v1	cucwmB441
CsaV3_5G028600	MELO3C005323	Melon (DHL92) v3.5.1	cucmeB350
CsaV3_5G028600	ClCG01G006080	Watermelon (Charleston Gray)	cucwcgB394
CsaV3_5G028600	Lsi09G006430	Bottle gourd (USVL1VR-Ls)	cuclsiB352
CsaV3_5G028600	MELO3C005323.2	Melon (DHL92) v3.6.1	cucmedB342

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G028600	Cucumber (Chinese Long) v3	cuccucB199
CsaV3_5G028600	Silver-seed gourd	carcucB0887
CsaV3_5G028600	Silver-seed gourd	carcucB1098
CsaV3_5G028600	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G028600	Cucumber (Gy14) v2	cgybcucB239
CsaV3_5G028600	Cucumber (Gy14) v1	cgycucB428
CsaV3_5G028600	Cucumber (Gy14) v1	cgycucB440
CsaV3_5G028600	Cucurbita maxima (Rimu)	cmacucB0497
CsaV3_5G028600	Cucurbita maxima (Rimu)	cmacucB0875
CsaV3_5G028600	Cucurbita moschata (Rifu)	cmocucB0486
CsaV3_5G028600	Cucurbita moschata (Rifu)	cmocucB0863
CsaV3_5G028600	Cucurbita pepo (Zucchini)	cpecucB0053
CsaV3_5G028600	Cucurbita pepo (Zucchini)	cpecucB0539
CsaV3_5G028600	Cucurbita pepo (Zucchini)	cpecucB0547
CsaV3_5G028600	Wild cucumber (PI 183967)	cpicucB302
CsaV3_5G028600	Bottle gourd (USVL1VR-Ls)	cuclsiB391
CsaV3_5G028600	Melon (DHL92) v3.5.1	cucmeB376
CsaV3_5G028600	Melon (DHL92) v3.6.1	cucmedB366
CsaV3_5G028600	Watermelon (Charleston Gray)	cucwcgB412
CsaV3_5G028600	Watermelon (97103) v1	cucwmB424
CsaV3_5G028600	Watermelon (97103) v2	cucwmbB359
CsaV3_5G028600	Watermelon (97103) v2	cucwmbB394
CsaV3_5G028600	Wax gourd	cucwgoB461
CsaV3_5G028600	Wax gourd	cucwgoB519