CsaV3_5G027520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G027520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC101491528
Locationchr5 : 22527711 .. 22527993 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATGA

mRNA sequence

TCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATG

Coding sequence (CDS)

TCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATG

Protein sequence

SFKIANATIFPTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEKVRAKKKKKETHDLRDAKX
Homology
[Close]
BLAST of CsaV3_5G027520 vs. NCBI nr
Match: KGN51406.1 (hypothetical protein Csa_5G528430 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 17 MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 76
          MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 77 VRAKKKKKETHDLRDAK 94
          VRAKKKKKETHDLRDAK
Sbjct: 61 VRAKKKKKETHDLRDAK 77

[Close]
BLAST of CsaV3_5G027520 vs. NCBI nr
Match: XP_012575064.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arietinum])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 13   EGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAF 72
            E   ++ +MS T++M+AK M+  G     GLGK+ +G  EL  LP+ ++K+GLG+KP   
Sbjct: 1053 ETTPIEPHMSNTAIMVAKFMLSRGHHPWHGLGKDEEGLKELVELPENRDKWGLGYKPTRD 1112

Query: 73   D-WEKVRAKKKKK 85
            D W  V+ KK+K+
Sbjct: 1113 DKWRLVKEKKEKR 1125

[Close]
BLAST of CsaV3_5G027520 vs. NCBI nr
Match: XP_016434638.1 (PREDICTED: uncharacterized protein LOC107760997, partial [Nicotiana tabacum])

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 20  YMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEKVRA 79
           ++S  S+M+AK MI+ GF++ KGLGK+ QG  EL +LP +++ FG+GF+P   D   V  
Sbjct: 589 FLSNASIMVAKEMIRHGFKLGKGLGKSLQGIVELITLPTSEKFFGVGFRPTPTDIRWVDD 648

Query: 80  KK 82
           +K
Sbjct: 649 RK 650

[Close]
BLAST of CsaV3_5G027520 vs. NCBI nr
Match: XP_022751233.1 (uncharacterized protein LOC111299949 [Durio zibethinus])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1    SFKIANATIFPTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAK 60
            SF+IANAT           Y+S T+ M+ K + K G++   GLGKN QG ++  ++ + +
Sbjct: 1014 SFEIANATYIAGGSKLYSPYLSTTTKMVVKQLTKMGWRPEAGLGKNLQGITKPSTINEKR 1073

Query: 61   EKFGLGFKPMAFDWEKVRAKKKKKETHDLR 91
            ++FGLG+KP   D  ++  +K+ K   +L+
Sbjct: 1074 DRFGLGYKPTRGDRTRMVNEKRDKRIANLK 1103

[Close]
BLAST of CsaV3_5G027520 vs. NCBI nr
Match: XP_022754214.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111302689 [Durio zibethinus])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1   SFKIANATIFPTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAK 60
           SF+IANAT           Y+S T+ M+ K + K G++   GLGKN QG ++  ++ + +
Sbjct: 751 SFEIANATYIAGGSKLYSPYLSTTTKMVVKQLTKMGWRPEAGLGKNLQGITKPSTINEKR 810

Query: 61  EKFGLGFKPMAFDWEKVRAKKKKKETHDLR 91
           ++FGLG+KP   D  ++  +K+ K   +L+
Sbjct: 811 DRFGLGYKPTRGDRTRMVNEKRDKRIANLK 840

[Close]
BLAST of CsaV3_5G027520 vs. TrEMBL
Match: tr|A0A0A0KUJ7|A0A0A0KUJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528430 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 17 MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 76
          MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 77 VRAKKKKKETHDLRDAK 94
          VRAKKKKKETHDLRDAK
Sbjct: 61 VRAKKKKKETHDLRDAK 77

[Close]
BLAST of CsaV3_5G027520 vs. TrEMBL
Match: tr|A0A1S3EI61|A0A1S3EI61_CICAR (LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 OS=Cicer arietinum OX=3827 GN=LOC101491528 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 13   EGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAF 72
            E   ++ +MS T++M+AK M+  G     GLGK+ +G  EL  LP+ ++K+GLG+KP   
Sbjct: 1053 ETTPIEPHMSNTAIMVAKFMLSRGHHPWHGLGKDEEGLKELVELPENRDKWGLGYKPTRD 1112

Query: 73   D-WEKVRAKKKKK 85
            D W  V+ KK+K+
Sbjct: 1113 DKWRLVKEKKEKR 1125

[Close]
BLAST of CsaV3_5G027520 vs. TrEMBL
Match: tr|A0A1S3X4K4|A0A1S3X4K4_TOBAC (uncharacterized protein LOC107760997 OS=Nicotiana tabacum OX=4097 GN=LOC107760997 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-05
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 20  YMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEKVRA 79
           ++S  S+M+AK MI+ GF++ KGLGK+ QG  EL +LP +++ FG+GF+P   D   V  
Sbjct: 589 FLSNASIMVAKEMIRHGFKLGKGLGKSLQGIVELITLPTSEKFFGVGFRPTPTDIRWVDD 648

Query: 80  KK 82
           +K
Sbjct: 649 RK 650

[Close]
BLAST of CsaV3_5G027520 vs. TrEMBL
Match: tr|A0A1S3EGN5|A0A1S3EGN5_CICAR (LOW QUALITY PROTEIN: uncharacterized protein LOC101500622 OS=Cicer arietinum OX=3827 GN=LOC101500622 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 13  EGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAF 72
           E   ++ +MS T++M+AK M+  G     GLGK+ +G  E   LP+ K+K+GLG+KP   
Sbjct: 901 ETTPIEPHMSNTAIMVAKFMLSRGHHPWHGLGKDEEGLKEPVELPENKDKWGLGYKPTRD 960

Query: 73  DWEKVRAKKKKK 85
           D  ++  +KK+K
Sbjct: 961 DKRRLVKEKKEK 972

[Close]
BLAST of CsaV3_5G027520 vs. TrEMBL
Match: tr|A0A1S4BT18|A0A1S4BT18_TOBAC (uncharacterized protein LOC107811583 OS=Nicotiana tabacum OX=4097 GN=LOC107811583 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 20  YMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMA--FDWEKV 79
           ++S  S+M+AK MI+ GF++ +GLGK+ QG +E  +LP  K+ FG+ F P     DW   
Sbjct: 644 FLSNASIMVAKEMIRQGFKLEEGLGKSLQGITEPITLPSTKKLFGIDFHPTPKYEDW--- 703

Query: 80  RAKKKKKE 86
            AKK++ E
Sbjct: 704 -AKKRRNE 707

The following BLAST results are available for this feature:
BLAST of CsaV3_5G027520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51406.11.1e-34100.00hypothetical protein Csa_5G528430 [Cucumis sativus][more]
XP_012575064.11.8e-0541.10PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arie... [more]
XP_016434638.16.8e-0545.16PREDICTED: uncharacterized protein LOC107760997, partial [Nicotiana tabacum][more]
XP_022751233.11.2e-0434.44uncharacterized protein LOC111299949 [Durio zibethinus][more]
XP_022754214.11.2e-0434.44LOW QUALITY PROTEIN: uncharacterized protein LOC111302689 [Durio zibethinus][more]
BLAST of CsaV3_5G027520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G027520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G027520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUJ7|A0A0A0KUJ7_CUCSA7.2e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528430 PE=4 SV=1[more]
tr|A0A1S3EI61|A0A1S3EI61_CICAR1.2e-0541.10LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 OS=Cicer arietinum OX=... [more]
tr|A0A1S3X4K4|A0A1S3X4K4_TOBAC4.5e-0545.16uncharacterized protein LOC107760997 OS=Nicotiana tabacum OX=4097 GN=LOC10776099... [more]
tr|A0A1S3EGN5|A0A1S3EGN5_CICAR2.2e-0438.89LOW QUALITY PROTEIN: uncharacterized protein LOC101500622 OS=Cicer arietinum OX=... [more]
tr|A0A1S4BT18|A0A1S4BT18_TOBAC3.8e-0442.65uncharacterized protein LOC107811583 OS=Nicotiana tabacum OX=4097 GN=LOC10781158... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G027520.1CsaV3_5G027520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G027520CsGy5G018260Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G027520Watermelon (97103) v2cucwmbB379
CsaV3_5G027520Wax gourdcucwgoB504
CsaV3_5G027520Silver-seed gourdcarcucB0311
CsaV3_5G027520Cucumber (Gy14) v1cgycucB300
CsaV3_5G027520Cucurbita maxima (Rimu)cmacucB0898
CsaV3_5G027520Cucurbita moschata (Rifu)cmocucB0892
CsaV3_5G027520Cucurbita pepo (Zucchini)cpecucB0560
CsaV3_5G027520Wild cucumber (PI 183967)cpicucB284
CsaV3_5G027520Bottle gourd (USVL1VR-Ls)cuclsiB361
CsaV3_5G027520Melon (DHL92) v3.5.1cucmeB384
CsaV3_5G027520Melon (DHL92) v3.6.1cucmedB378
CsaV3_5G027520Watermelon (Charleston Gray)cucwcgB381
CsaV3_5G027520Watermelon (97103) v1cucwmB460