CsGy5G018260 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G018260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionGag-pro-like protein
LocationChr5 : 24461901 .. 24462333 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCAGTTCCATCTTCACTGCATCAAAAATTGAAGTTTAGTGTAGAATGTGGTCAAGCTATTGTCTACAGAGAAGAAGACGTGTTTGTAACAAAAACATCAGCACTTCCTTGTATGTTGAGCAGTAGAGGAAGCTCTGGAATGTTCTTACAGATCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAA

mRNA sequence

AGGGCAGTTCCATCTTCACTGCATCAAAAATTGAAGTTTAGTGTAGAATGTGGTCAAGCTATTGTCTACAGAGAAGAAGACGTGTTTGTAACAAAAACATCAGCACTTCCTTGTATGTTGAGCAGTAGAGGAAGCTCTGGAATATCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAA

Coding sequence (CDS)

AGGGCAGTTCCATCTTCACTGCATCAAAAATTGAAGTTTAGTGTAGAATGTGGTCAAGCTATTGTCTACAGAGAAGAAGACGTGTTTGTAACAAAAACATCAGCACTTCCTTGTATGTTGAGCAGTAGAGGAAGCTCTGGAATATCATTCAAAATTGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAA

Protein sequence

RAVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGISFKIANATIFPTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEKVRAKKKKKETHDLRDAK
Homology
[Close]
BLAST of CsGy5G018260 vs. NCBI nr
Match: KGN51406.1 (hypothetical protein Csa_5G528430 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 65  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 124
           MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1   MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 125 VRAKKKKKETHDLRDAK 142
           VRAKKKKKETHDLRDAK
Sbjct: 61  VRAKKKKKETHDLRDAK 77

[Close]
BLAST of CsGy5G018260 vs. NCBI nr
Match: XP_022728753.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111284309 [Durio zibethinus])

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 0 

Query: 2   AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSR---GSSGISFKIANATIF 61
           A+PSSLHQK+KF +E  Q  V  EED+ VTKT A P + ++      S  +F++ANAT +
Sbjct: 795 AIPSSLHQKVKFIIEGKQVCVDGEEDLLVTKTLATPYVETAEEVIECSFRAFEVANAT-Y 854

Query: 62  PTEGLDMD-RYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKP 121
             EG  M    +SKT+ M+ K     G+++ +GLGK  QG +    L + KEK+GLG+KP
Sbjct: 855 IREGSRMSISQLSKTTNMVIKQTAGKGWRVGQGLGKALQGITRAPCLVENKEKWGLGYKP 914

Query: 122 MAFDWEKVRAKKKKK 133
            A D + V  +KK+K
Sbjct: 915 SATDKKNVMLEKKEK 928

[Close]
BLAST of CsGy5G018260 vs. NCBI nr
Match: XP_014621683.2 (uncharacterized protein LOC102664777 [Glycine max])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 0 

Query: 3   VPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGISFK-IANATIFPTE 62
           +PS+LHQKLKF VE    IV  EED+ V+  S++P + +   S  ++F+     +I   +
Sbjct: 356 IPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAVEESLEMTFQSFEVVSIASVD 415

Query: 63  GLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFD 122
            L     +S  ++M+A+ M+  G++   GLGKNN G + L S    + KFGLG+KPM  D
Sbjct: 416 SLSRQPRLSDAAMMVARVMLGHGYEPRMGLGKNNDGRTSLVSTRGNRGKFGLGYKPMQAD 475

Query: 123 WEKVRAKKKKK 133
             K  +K+K K
Sbjct: 476 IRKNISKRKNK 486

[Close]
BLAST of CsGy5G018260 vs. NCBI nr
Match: XP_022751233.1 (uncharacterized protein LOC111299949 [Durio zibethinus])

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-12
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 2    AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGS---SGISFKIANATIF 61
            AVPSSLHQK+KF VE     V  EED+ VT+    P + S+  +   S  SF+IANAT  
Sbjct: 964  AVPSSLHQKVKFIVEGKLTCVAGEEDLLVTQPINTPYVESADEALECSYRSFEIANATYI 1023

Query: 62   PTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPM 121
                     Y+S T+ M+ K + K G++   GLGKN QG ++  ++ + +++FGLG+KP 
Sbjct: 1024 AGGSKLYSPYLSTTTKMVVKQLTKMGWRPEAGLGKNLQGITKPSTINEKRDRFGLGYKPT 1083

Query: 122  AFDWEKVRAKKKKKETHDLR 139
              D  ++  +K+ K   +L+
Sbjct: 1084 RGDRTRMVNEKRDKRIANLK 1103

[Close]
BLAST of CsGy5G018260 vs. NCBI nr
Match: XP_022754214.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111302689 [Durio zibethinus])

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-12
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 2   AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGS---SGISFKIANATIF 61
           AVPSSLHQK+KF VE     V  EED+ VT+    P + S+  +   S  SF+IANAT  
Sbjct: 701 AVPSSLHQKVKFIVEGKLTCVAGEEDLLVTQPINTPYVESADEALECSYRSFEIANATYI 760

Query: 62  PTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPM 121
                    Y+S T+ M+ K + K G++   GLGKN QG ++  ++ + +++FGLG+KP 
Sbjct: 761 AGGSKLYSPYLSTTTKMVVKQLTKMGWRPEAGLGKNLQGITKPSTINEKRDRFGLGYKPT 820

Query: 122 AFDWEKVRAKKKKKETHDLR 139
             D  ++  +K+ K   +L+
Sbjct: 821 RGDRTRMVNEKRDKRIANLK 840

[Close]
BLAST of CsGy5G018260 vs. TrEMBL
Match: tr|A0A0A0KUJ7|A0A0A0KUJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528430 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 65  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 124
           MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1   MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 125 VRAKKKKKETHDLRDAK 142
           VRAKKKKKETHDLRDAK
Sbjct: 61  VRAKKKKKETHDLRDAK 77

[Close]
BLAST of CsGy5G018260 vs. TrEMBL
Match: tr|A0A1S4DCN9|A0A1S4DCN9_TOBAC (uncharacterized protein LOC107828399 OS=Nicotiana tabacum OX=4097 GN=LOC107828399 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 2   AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGI---SFKIANATIF 61
           AVPS+LHQ +KF  E  + +V+ E++  + K  ++PC+ +  GS  I   +F I  A  +
Sbjct: 635 AVPSTLHQMVKFEHEDQEIVVHGEDEHAIYKDPSIPCLAAREGSEHIVYQAFDIVMADQY 694

Query: 62  PTEGLDMDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPM 121
                    ++   S+M+AK M++ GFQ+ +GLGK+ QG     +LP  ++ FGLGF P 
Sbjct: 695 EEGSPCPQPFLFNASIMVAKEMLRHGFQLGRGLGKSLQGIPVPITLPTTEKFFGLGFHPP 754

Query: 122 AFDWEKVRAKKKKKE 134
             D   VR K  ++E
Sbjct: 755 PQDETFVRPKYDEEE 769

[Close]
BLAST of CsGy5G018260 vs. TrEMBL
Match: tr|A0A1S3ZBX0|A0A1S3ZBX0_TOBAC (uncharacterized protein LOC107785180 OS=Nicotiana tabacum OX=4097 GN=LOC107785180 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 0 

Query: 2   AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGISFKIANATIFP-- 61
           A+PS+LHQ +KF  E  + IV+ E++  + +  ++PC+ +  GS  I +++    +    
Sbjct: 721 AIPSTLHQMVKFVYENQEIIVHGEDEHSIYRDPSVPCLEAKEGSEHIVYQVFEVVVADQC 780

Query: 62  TEGLDMDR-YMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGF 116
            EG    + ++SK S+M+AK MI+ G++  KGLG + QG +E  +LP AK+ FG+GF
Sbjct: 781 EEGSPYPQPFLSKASVMVAKEMIRHGYKPEKGLGASLQGITEPITLPAAKKFFGVGF 837

[Close]
BLAST of CsGy5G018260 vs. TrEMBL
Match: tr|A0A1U7YEV0|A0A1U7YEV0_NICSY (uncharacterized protein LOC104243781 OS=Nicotiana sylvestris OX=4096 GN=LOC104243781 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 0 

Query: 1   RAVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGISFKIANATIFP- 60
           RAVPS+LHQ LKF  +  + IV+ E++  V K   +PC+++  GS  I ++     +   
Sbjct: 489 RAVPSTLHQMLKFEHDGQEIIVHGEDESSVYKDPLIPCIVAKEGSESIVYQAFEVVVVDH 548

Query: 61  -TEGLD-MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKP 120
             EG   M   +S TS+M+A  M++ G++  KGLG + QG SE  S    +  FGLGF+P
Sbjct: 549 VEEGKPIMHPCLSATSVMVATVMMRQGYEPGKGLGASLQGISEPISSLGNRGTFGLGFRP 608

Query: 121 MAFDWEKVRAKKK 131
              D  K + +KK
Sbjct: 609 TQADKNKSKHRKK 621

[Close]
BLAST of CsGy5G018260 vs. TrEMBL
Match: tr|A0A1S3YX47|A0A1S3YX47_TOBAC (uncharacterized protein LOC107780695 OS=Nicotiana tabacum OX=4097 GN=LOC107780695 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 41/117 (35.04%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 2   AVPSSLHQKLKFSVECGQAIVYREEDVFVTKTSALPCMLSSRGSSGISFKIANATIFP-- 61
           A+PS+LHQ +KF  E    IV+ E++  + + S++PC+ + +GS  I +++    +    
Sbjct: 749 AIPSTLHQMVKFVHENQDIIVHGEDEHSIYRDSSVPCLEAKKGSEHIVYQVFEVVVADQC 808

Query: 62  TEGLDMDR-YMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGF 116
            EG+   + ++SK S+M++K MI+ G+++ KGL  + QG +E  +LP A++ FG+GF
Sbjct: 809 EEGIPYPQPFLSKASVMVSKEMIRHGYKLGKGLRASLQGITEPITLPAAEKFFGVGF 865

The following BLAST results are available for this feature:
BLAST of CsGy5G018260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51406.11.6e-34100.00hypothetical protein Csa_5G528430 [Cucumis sativus][more]
XP_022728753.11.6e-1342.96LOW QUALITY PROTEIN: uncharacterized protein LOC111284309 [Durio zibethinus][more]
XP_014621683.26.0e-1338.17uncharacterized protein LOC102664777 [Glycine max][more]
XP_022751233.13.9e-1237.86uncharacterized protein LOC111299949 [Durio zibethinus][more]
XP_022754214.13.9e-1237.86LOW QUALITY PROTEIN: uncharacterized protein LOC111302689 [Durio zibethinus][more]
BLAST of CsGy5G018260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G018260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G018260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUJ7|A0A0A0KUJ7_CUCSA1.1e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528430 PE=4 SV=1[more]
tr|A0A1S4DCN9|A0A1S4DCN9_TOBAC5.7e-1235.56uncharacterized protein LOC107828399 OS=Nicotiana tabacum OX=4097 GN=LOC10782839... [more]
tr|A0A1S3ZBX0|A0A1S3ZBX0_TOBAC5.7e-1236.75uncharacterized protein LOC107785180 OS=Nicotiana tabacum OX=4097 GN=LOC10778518... [more]
tr|A0A1U7YEV0|A0A1U7YEV0_NICSY5.7e-1237.59uncharacterized protein LOC104243781 OS=Nicotiana sylvestris OX=4096 GN=LOC10424... [more]
tr|A0A1S3YX47|A0A1S3YX47_TOBAC2.2e-1135.04uncharacterized protein LOC107780695 OS=Nicotiana tabacum OX=4097 GN=LOC10778069... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G018260.1CsGy5G018260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G018260Csa5G528430Cucumber (Chinese Long) v2cgybcuB223
CsGy5G018260CsaV3_5G027520Cucumber (Chinese Long) v3cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G018260Cucurbita maxima (Rimu)cgybcmaB688
CsGy5G018260Cucurbita moschata (Rifu)cgybcmoB669
CsGy5G018260Cucurbita pepo (Zucchini)cgybcpeB664
CsGy5G018260Bottle gourd (USVL1VR-Ls)cgyblsiB308
CsGy5G018260Melon (DHL92) v3.5.1cgybmeB323
CsGy5G018260Melon (DHL92) v3.6.1cgybmedB321
CsGy5G018260Watermelon (Charleston Gray)cgybwcgB331
CsGy5G018260Watermelon (97103) v1cgybwmB406
CsGy5G018260Wild cucumber (PI 183967)cgybcpiB225
CsGy5G018260Watermelon (97103) v2cgybwmbB345