CsaV3_5G020780 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G020780
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	transcription factor DIVARICATA-like
Location	chr5 : 15909728 .. 15914897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTGGGGTTGAGCCATTTTCAATCCTAGCTGTATGGAATGGGACCAAAAATCCCCATTCTTCACTGTTCTTTCTCCTCCTTCTCCCCCTCTTCACTTGTGTGGATTTCTCAACATCACCCATCATTTTCTCTAGTAATTTCTATCTCTACCCTTTGTAATTTTTCAACATTATTGAGGGTTTTCTTTTCCCCTTTTTCAAAACCTATGGTGTTTTTCATCTTTTCTTTTTTCTGTGTTTATCTTAATTCTGGACTCTCCCAGTTGTTTCTTCTCCTTAGATTCGATTTCTGCTCTTTCTTTGTCTTTTCTTTGATTTCTCACTAAAGCTTGTAGTGAAATGTAAGGTAATGGGTGTAATTAAGCTTTACGTTTTTGGGGTTTTGTTGTCTTCTTCTCTTTTTACTGTGATTGTTGGAGTAATTTGGACATTTCAGCTCCGATTCTTACTTTGCTAGGTAAATGAATACTGGGGTTCATTGTTCTTTTTTTTTTTTTTATGGATTTTTGGGTAAACTGTCAAAATCTTTGTGGTTATTATAAGCCTAGTTTTGTTTCTTCTTCGTTAGTTTTTTCTGGGTTCGATCATCGATTTTTCTAGGCTTTGAAAGCAAGAAGACGAGGGTTTCGAGGTGGGTTTCTTCTTCTTTTCATTCAAATCAGTGGTTTATCGAGCTGTTTTTGATGTTTAAGAAGTGGGTTTTATGGAATTTTTATGAACCTGTTTATTTTTTGAATTCAGATTCTCATAAACGAAAACCCCTTTTGAACTTTGCTTCATTAAAACTGAAATCCTTTCACTTTGATTGAATCCAATTTGGGGTTTTATGGTCTTTTGTTTTTGGAAACCGACAATACCTAACACATCCTTTTACTTCTTTCGTATATCTATATATTCAAGATAGGTTCTATTTTTGGACTTCTTTTCTCTTCTTTCCTTAAATGATTCCACCCCATCTGCTTAAGTAGCAGAAACAATCTTATGCTAAGTTATGATTTGCTGTAAAAAATGAGTGTAGAATTGTGAGAATCTGAAATGGAACGGGATAAACTTTGGTGGGCCTCAAGTGTTAAAAAAGCTTTGTGACATGTTTGGCTTTGGTAATTGAGTTTTTTGTTTTGTTATGTATCAGAAGACTCCTCTTTTACTCTTTTTTTCCCCTCTTATTATCCTTCGTGAACTTCTGGGTTGTTACCTCTATGTTTGTTAGTCTCCAATGTCCCTTTCAAATTTCGCAATTCAAAGCTTTAATTACCACTTTGTTTATATCATGACTGCATTAATTTCCATTGCCTCACAGAAAACTGACAATATATTTTATTATTAATATTATTATTGTTATATTTACTATTACTATTATTATTATTTTTTGATATTATGGCATTCAGATATTTCTTATGGTCCAACTGAACTCTGTTGCCTTTTCGTTCTTTCAATAGGTCAGCTGCTCACAAGAGTCGAGTTCTTGTGCTGTGGAGCAAATCAACACTGAGAATCCTCTTCTACTTTACAGGTTTTTGCTACTTTTTCTCTAGACTGCTCTCTGGTTTCAACTTGCTCCAAGCTTTCTCTTTGTGTTTTCGTCTTCGTCTTCCCGAATTTGAAGTAAATTGCGGGATCTGAAGCCTTATCTGCTTCCCCAATCTGAATCTTTGTTATCGGTTGCATCTACGTGAGATAGAACAAAGTCCCAATTCCATAAATCAGTTCTGGAAACTCAGTCTTCTCTTAGATTTAGGAAACAGAAAATTTAATTGTTAGAAACCTCAATTTTGGAACACTAGCGTACAGTTGGGTGAAGCTGGTTCTTTTCTTCTTCTTCTGGTGGCTAATTCTGCTCAGCAGACTTAAACAAGGTCAGATGACTGTTGATGAAGCAGGAAGTAGCTCCTTGTGGAGTTTAGAACAGGACAAGGCATTTGAGAATGCACTTGCAAGTCATCCCGAGGATGATTCGGATCGGTGGGAGAAAATTGCAGTCGATGTACCAGGGAAAACCATAGAAGAGATTAAACATCACTATGAGCTCTTAGTTGAGGATGTTAATCTAATTGAATCGGGTTGTGTGCCTCTCCCTTCCTATAGTTCTTCTTCAGATGGTTCAGCCAACCATGCTGGTGATGAAGGAACAACTAAGAAGAATGGTCATTTTGGGAACTGTAATGGTGATTCAAATCATGGAAGTAAGACTTCAAGGTCAGATCAAGAACGCCGTAAAGGGATTGCTTGGACAGAGGATGAACACAGGTGAATTGACTCTTTATGTTTATGCTTCTCTCCCTCGTCCTTCTCATAGAAGCTGTGATATGGTATCTTATGAAAGTCAAAAGTTTGGTTACTGTTTTGTTAATCAGATTACTTTTGTTTCTTTCTCCTTGACACAAACATCTTGTTTTCATGGAACTAGCTACAGTCCATGAATGACACACTATATTATCATAGGCATAGCATAGTCGAGTTAGACTGGTCCTGTCCTAAACCCCTACCTGAGCTCACGGGAATGTGCTATTTCTAATGCTCTGTTAGGTATATGTCTCTGATTTCTAATGAAACACTAATTGCCTCGGTAAACCTCCTCCTGCCTAAAGTTTTCTTTATCCAATTAAAGTTACACGATACAACCATGCCTCAGGTCTCTCAAACTCAATTACTTAGAATTGATTTTTGTCCTACTTCAGACAAACAAAGGTTTAGTAGCATATTGATGACAAATAGCAGCCGTAACCCGAAGTTTTAAATGTCATGTATGTCTGTTTAGTTGTGATGCTGTCCAAAATTGCTCTCTTGTTTTTAGGTTTTGGAGTTTATTCTAATAAATTTGTACTCCCGAAATCTAGTTGGAAACATTCTTTGGGAGGGGGATCAGCTGAGTTATTGGAATAAAGTTAGTTTCTTTATGCCCTTCTTTTGAAACCACCTCCATATCTCTGTTGAAACCATCCTGCTTTTTATTGAAAATGTATGATGAGATTTTCAGTTTTATTGTGGCTAAGTCTGCTTCTTGGTTCTTCTGTGTTCCGCCAACGTGGTGTAAATTCTGATCTTTCTAGCTATAGTCGATGCAACTGAACCTAAACACATTGATGCATATGAACACTTGCATCAAGATAGTGTTTCATCAAATCCAGTAGGCCTTTTATGAGTTGTGAGAATAAAAGAATCCTGGATTTTAATGTAACGTAAAGAGTTTTCATTACAACCTGTTTCCTATATGAGTTAAATCATCCATTGACCAAAAAGTTTAAGATAGTGGGTTGTCATAAATTTAATTATGTCAAAATTTAACACTTTCCTTCACTCGTCGGCTTGCTTGAAAGTTTGTAACTGACCCAACAAATGGAGATTAATATTAAGCAAGGAGGAAATGACATAGGTTCAAACATAGAATCTCTTATTCTAATGCCATGTTAAATCACCGATTGACTCGAATTTAAGCTAGTGGGCTAAGATAAATTTAATTATTTCAACACTTCAATGTTATTCCAAATTTGTTGCATTTACTTTCAGCTCTTAGAAGATTTGTTTGTTGAGAACTCTTCATATTGCCTTCCTTTGATTGACTCAAACATCTTTATTGGAAGCTCTTTGGAAATATGTCCTGTCGAGTAATCTGATATTTGGATTTTGGATTAAATGTTAAGAACTTATTAACCACGTTATTATTTAGTGGTTCTATACGTTATTATAGTATGTGTTTGGGATACAAACTATTTTAATTTGGATAGGAAAATAAACGCTAACAAAAAAGATTTGGAAATAGTAAAATTGTAGTGTATCATAGGCTATAATAGTTGGTTTCCAACTAATAATAGTAATGTTAGCCCCAAACTAGTCCCCAATCCACTTGAAGCTGGGGGTCCAAACATCCCCTTGGGGACTTATTAGACACATTTAAAATTTTAAATGCATATGACGATTTGATGCATTCAATGTTGTGCCCAACTGACGCGTCACCGTGTGTTGAGTGCTCAAATTGTTCTTAGAAACTGGTTTAAGAACTAGTGAAACATGTTTGGTAAATCTGTTTATTCTTTTTGCCTTGTTTTAGAAAATCTGACTTATGAATAACGTTATGGTTTGTAAATGCCAAGCTTATAGCCTAAAATTTTTCTGAGGCCTTATAACGCTGGCCTTTAGAAGTTGAAGTATTTCTTTGTTCCATGTGTTTCTCTTTCTTTGTAACATCTGCCTTGAAGTTTTAAACTCCTTCATGCCTGACTACACAGATTATTTCTACTTGGTCTTGATAAATATGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTTGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATCCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGCGTTGCAAATGGAGATATCTCAGCGGCTCAAGGGCCAATCACGGGTCAAGCAAATGGCTCTGGAGCAGCTCCCTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCAGCTGGTCCTCCTGGTGTGGGAATGTACGGTGGTCCAACAATGGGACAGCCAGTGGGCGGTCCACTTGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCCGCTCATATGGCATATGGAGTCCGAGCTCCAGTGCCCGGCACAGTGGTTCCCGGTGCACCCGTAAACATGGGCCCAATGACATATCCAATGCCTCCCACATCTGCTCATAGGTAATATACAAATTATTGGATGCTGGGAATGCCATTTTGTTTTTTCTCAATCTTTCAATTATCTTCTCTAATTGGCAATGGAAATAAAGCCATAATGGAGGAAAATTTACAAGTTTCTGTATAGGCAGTAGGAAGTTAAGGAACAAAAAAAATGGTAAGCAGTTATGAATGAATAGGACATCCTCTGTTAGATCTCTCTCTCTTTTTCT

mRNA sequence

ATGACTGTTGATGAAGCAGGAAGTAGCTCCTTGTGGAGTTTAGAACAGGACAAGGCATTTGAGAATGCACTTGCAAGTCATCCCGAGGATGATTCGGATCGGTGGGAGAAAATTGCAGTCGATGTACCAGGGAAAACCATAGAAGAGATTAAACATCACTATGAGCTCTTAGTTGAGGATGTTAATCTAATTGAATCGGGTTGTGTGCCTCTCCCTTCCTATAGTTCTTCTTCAGATGGTTCAGCCAACCATGCTGGTGATGAAGGAACAACTAAGAAGAATGGTCATTTTGGGAACTGTAATGGTGATTCAAATCATGGAAGTAAGACTTCAAGGTCAGATCAAGAACGCCGTAAAGGGATTGCTTGGACAGAGGATGAACACAGATTATTTCTACTTGGTCTTGATAAATATGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTTGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATCCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGCGTTGCAAATGGAGATATCTCAGCGGCTCAAGGGCCAATCACGGGTCAAGCAAATGGCTCTGGAGCAGCTCCCTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCAGCTGGTCCTCCTGGTGTGGGAATGTACGGTGGTCCAACAATGGGACAGCCAGTGGGCGGTCCACTTGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCCGCTCATATGGCATATGGAGTCCGAGCTCCAGTGCCCGGCACAGTGGTTCCCGGTGCACCCGTAAACATGGGCCCAATGACATATCCAATGCCTCCCACATCTGCTCATAGGTAA

Coding sequence (CDS)

ATGACTGTTGATGAAGCAGGAAGTAGCTCCTTGTGGAGTTTAGAACAGGACAAGGCATTTGAGAATGCACTTGCAAGTCATCCCGAGGATGATTCGGATCGGTGGGAGAAAATTGCAGTCGATGTACCAGGGAAAACCATAGAAGAGATTAAACATCACTATGAGCTCTTAGTTGAGGATGTTAATCTAATTGAATCGGGTTGTGTGCCTCTCCCTTCCTATAGTTCTTCTTCAGATGGTTCAGCCAACCATGCTGGTGATGAAGGAACAACTAAGAAGAATGGTCATTTTGGGAACTGTAATGGTGATTCAAATCATGGAAGTAAGACTTCAAGGTCAGATCAAGAACGCCGTAAAGGGATTGCTTGGACAGAGGATGAACACAGATTATTTCTACTTGGTCTTGATAAATATGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTTGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATCCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGCGTTGCAAATGGAGATATCTCAGCGGCTCAAGGGCCAATCACGGGTCAAGCAAATGGCTCTGGAGCAGCTCCCTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCAGCTGGTCCTCCTGGTGTGGGAATGTACGGTGGTCCAACAATGGGACAGCCAGTGGGCGGTCCACTTGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCCGCTCATATGGCATATGGAGTCCGAGCTCCAGTGCCCGGCACAGTGGTTCCCGGTGCACCCGTAAACATGGGCCCAATGACATATCCAATGCCTCCCACATCTGCTCATAGGTAA

Protein sequence

MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSVANGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR

Homology

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BLAST of CsaV3_5G020780 vs. NCBI nr
Match: XP_004149865.1 (PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655162.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655163.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655164.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655165.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655166.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >KGN50946.1 hypothetical protein Csa_5G353650 [Cucumis sativus])

HSP 1 Score: 516.9 bits (1330), Expect = 4.5e-143
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP
Sbjct: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR
Sbjct: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. NCBI nr
Match: XP_008465139.1 (PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465150.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465157.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465164.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 6.4e-142
Identity = 292/295 (98.98%), Postives = 293/295 (99.32%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKT+EEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQE RKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQEHRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSVANGDISA QGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP
Sbjct: 181 SIHDITSVANGDISATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR
Sbjct: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. NCBI nr
Match: XP_022962914.1 (transcription factor SRM1 [Cucurbita moschata] >XP_022962922.1 transcription factor SRM1 [Cucurbita moschata] >XP_022962932.1 transcription factor SRM1 [Cucurbita moschata] >XP_022962940.1 transcription factor SRM1 [Cucurbita moschata])

HSP 1 Score: 496.5 bits (1277), Expect = 6.2e-137
Identity = 281/295 (95.25%), Postives = 290/295 (98.31%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIA DVPGK++EEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAADVPGKSVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSA+HAGDEGTTKKNGHFG+CNGDSNHGSKTSRSDQERRKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSASHAGDEGTTKKNGHFGHCNGDSNHGSKTSRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV NGD+SAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMYGGPT+GQP
Sbjct: 181 SIHDITSVTNGDVSAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGMYGGPTIGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGG +VSAVGTPV++PAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMP TSAHR
Sbjct: 241 VGGAVVSAVGTPVNIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. NCBI nr
Match: XP_022990112.1 (transcription factor SRM1 [Cucurbita maxima] >XP_022990113.1 transcription factor SRM1 [Cucurbita maxima] >XP_022990114.1 transcription factor SRM1 [Cucurbita maxima] >XP_022990115.1 transcription factor SRM1 [Cucurbita maxima])

HSP 1 Score: 491.9 bits (1265), Expect = 1.5e-135
Identity = 279/295 (94.58%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIA DVPGKT+EEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAADVPGKTVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSA+HAGDEG TKKNGHFG+CNGDSNHGSK SRSDQERRKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSASHAGDEGMTKKNGHFGHCNGDSNHGSKNSRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV NGD+SAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMYGGPT+GQP
Sbjct: 181 SIHDITSVTNGDVSAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGMYGGPTIGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGP+VSAVGTPV++PAPAHMAYGVRAPV G VVPGAPVNMGPMTYPMP TSAHR
Sbjct: 241 VGGPVVSAVGTPVNIPAPAHMAYGVRAPVAGAVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. NCBI nr
Match: XP_023536896.1 (transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536902.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536911.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536920.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 488.4 bits (1256), Expect = 1.7e-134
Identity = 278/295 (94.24%), Postives = 285/295 (96.61%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIA DVPGKT+EEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAADVPGKTVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSA+HAGDEGTTKKNGHFG+CNGDSNHGSKTSRSDQERRKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSASHAGDEGTTKKNGHFGHCNGDSNHGSKTSRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV NGD+SAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMYGGPT+GQP
Sbjct: 181 SIHDITSVTNGDVSAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGMYGGPTIGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGP+VSA      +PAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMP TSAHR
Sbjct: 241 VGGPVVSAXXXXXXIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. TAIR10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 278.5 bits (711), Expect = 4.8e-75
Identity = 190/304 (62.50%), Postives = 210/304 (69.08%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTV+E    S+WS E D AFE ALA++ ++  +RWEKIA DVPGK++E+IK HYELLVED
Sbjct: 1   MTVEEVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           V  IESGCVPLP+Y  S +GS  HAGD                          DQERRKG
Sbjct: 61  VTRIESGCVPLPAY-GSPEGSNGHAGD--XXXXXXXXXXXXXXXXXXXXXXXXDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV N D+S  QG        XXXXXXXXXXXXXXXXXXXXXXX          P
Sbjct: 181 SIHDITSVGNADVSTPQG---PITGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQAP 240

Query: 241 VGGPL-------VSAVGTPVSLPAPAHMAYGVR-APVPGTVVPGAPVNMGPMTYPMPPT- 296
            G P+               +LPAP HMAYGV  APVPG+VVPGA +N+G M Y MP T 
Sbjct: 241 PGPPMYXXXXXXXXXXXXXXNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTP 298

[Close]

BLAST of CsaV3_5G020780 vs. TAIR10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator)

HSP 1 Score: 182.2 bits (461), Expect = 4.7e-46
Identity = 97/188 (51.60%), Postives = 130/188 (69.15%), Query Frame = 0


Query: 3   VDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVN 62
           V  +G  + W+  ++KAFENALA + ++  DRW+K+A  +PGKT+ ++   Y  L  DV+
Sbjct: 25  VAASGEGATWTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVS 84

Query: 63  LIESGCVPLPSYSSSSDGSANHAGDEGTTK--KNGHFGNCNGDSNHGSKTSRSDQERRKG 122
            IE+G +P+P Y +S   + + AG  G     K GH   CN  S  G      + ER+KG
Sbjct: 85  SIEAGLIPVPGYITSPPFTLDWAGGGGGCNGFKPGH-QVCNKRSQAGRS---PELERKKG 144

Query: 123 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 182
           + WTE+EH+LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  K++RR+
Sbjct: 145 VPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRA 204

Query: 183 SIHDITSV 189
           SIHDIT+V
Sbjct: 205 SIHDITTV 208

[Close]

BLAST of CsaV3_5G020780 vs. TAIR10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 181.8 bits (460), Expect = 6.2e-46
Identity = 95/183 (51.91%), Postives = 127/183 (69.40%), Query Frame = 0


Query: 12  WSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVNLIESGCVPL 71
           W+ E++K FENALA + +D  DRW ++A  +PGKT+ ++   Y  L EDV+ IE+G +P+
Sbjct: 29  WTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPI 88

Query: 72  PSYSSSSDGSANHAGDEGTTKKNGHFGNCNG------DSNHGSKTSRSDQERRKGIAWTE 131
           P Y+S S  + +  G +G +  NG   N NG          GS    ++ ER+KG+ WTE
Sbjct: 89  PGYASDS-FTLDWGGYDGASGNNGF--NMNGYYFSAAGGKRGSAARTAEHERKKGVPWTE 148

Query: 132 DEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDI 189
           +EHR FL+GL KYGKGDWR+I+RNFV TRTPTQVASHAQKYFIR  +  K++RRSSIHDI
Sbjct: 149 EEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRSSIHDI 208

[Close]

BLAST of CsaV3_5G020780 vs. TAIR10
Match: AT1G49010.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-45
Identity = 138/305 (45.25%), Postives = 162/305 (53.11%), Query Frame = 0


Query: 12  WSLEQDKAFENALASH---PEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVNLIESGC 71
           WS E++KAFENA+A H    E   D+W K++  VP K +EE+K HY++L+EDV  IE+G 
Sbjct: 8   WSREEEKAFENAIALHCVEEEITEDQWNKMSSMVPSKALEEVKKHYQILLEDVKAIENGQ 67

Query: 72  VPLPSY--------------SSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSD 131
           VPLP Y                                                      
Sbjct: 68  VPLPRYHHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 127

Query: 132 QERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMN 191
              RKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++RTPTQVASHAQKYFIRLNSMN
Sbjct: 128 XXXRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMN 187

Query: 192 KERRRSSIHDITSVANGDISAAQG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMY 251
           ++RRRSSIHDIT+V N   +   G            XXXXXXXXXXXXX        GMY
Sbjct: 188 RDRRRSSIHDITTVNNQAPAVTGGGQQPQVVKHRPAXXXXXXXXXXXXXHPPTMAGLGMY 247

Query: 252 GGPTMGQPVGGP---LVSAVGTPVSLPAPAHMAYGVRAPVPGT---VVPGAPVNMGPMTY 292
           GG  +GQP+  P   + SAVGTPV                 G     VP  PV   P  +
Sbjct: 248 GGAPVGQPIIAPPDHMGSAVGTPVXXXXXXXXXXXXXXXXLGVAPYAVPAYPVPPLPQQH 307

[Close]

BLAST of CsaV3_5G020780 vs. TAIR10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-43
Identity = 97/181 (53.59%), Postives = 122/181 (67.40%), Query Frame = 0


Query: 8   SSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVNLIESG 67
           +SS W+  +DK FE AL   PE   +RWE+IA D   K+  E++ HYE+LV DV  I+SG
Sbjct: 2   ASSQWTRSEDKMFEQALVLFPEGSPNRWERIA-DQLHKSAGEVREHYEVLVHDVFEIDSG 61

Query: 68  CVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKGIAWTEDE 127
            V +P Y    D +A  AG +         G  +  S HG      + ER++G  WTE+E
Sbjct: 62  RVDVPDY--MDDSAAAAAGWDSA-------GQISFGSKHG------ESERKRGTPWTENE 121

Query: 128 HRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITS 187
           H+LFL+GL +YGKGDWRSISRN VVTRTPTQVASHAQKYF+R NS+ KER+RSSIHDIT+
Sbjct: 122 HKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITT 166

Query: 188 V 189
           V
Sbjct: 182 V 166

[Close]

BLAST of CsaV3_5G020780 vs. Swiss-Prot
Match: sp|Q9FNN6|SRM1_ARATH (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.7e-74
Identity = 190/304 (62.50%), Postives = 210/304 (69.08%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTV+E    S+WS E D AFE ALA++ ++  +RWEKIA DVPGK++E+IK HYELLVED
Sbjct: 1   MTVEEVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           V  IESGCVPLP+Y  S +GS  HAGD                          DQERRKG
Sbjct: 61  VTRIESGCVPLPAY-GSPEGSNGHAGD--XXXXXXXXXXXXXXXXXXXXXXXXDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV N D+S  QG        XXXXXXXXXXXXXXXXXXXXXXX          P
Sbjct: 181 SIHDITSVGNADVSTPQG---PITGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQAP 240

Query: 241 VGGPL-------VSAVGTPVSLPAPAHMAYGVR-APVPGTVVPGAPVNMGPMTYPMPPT- 296
            G P+               +LPAP HMAYGV  APVPG+VVPGA +N+G M Y MP T 
Sbjct: 241 PGPPMYXXXXXXXXXXXXXXNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTP 298

[Close]

BLAST of CsaV3_5G020780 vs. Swiss-Prot
Match: sp|Q8S9H7|DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 98/190 (51.58%), Postives = 134/190 (70.53%), Query Frame = 0


Query: 3   VDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVEDVN 62
           ++E+ S++ W+  ++KAFENALA   E+  +RWE++A  VPGKT+ ++   Y+ L +DV+
Sbjct: 17  LEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVS 76

Query: 63  LIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKGIA 122
            IE+G VP+P YS+SS  +       G       +G     S+ G     S+QER+KG+ 
Sbjct: 77  SIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSGRP---SEQERKKGVP 136

Query: 123 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSI 182
           WTE+EH+LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  K++RR+SI
Sbjct: 137 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASI 196

Query: 183 HDITSVANGD 193
           HDIT+V   D
Sbjct: 197 HDITTVNLSD 203

[Close]

BLAST of CsaV3_5G020780 vs. Swiss-Prot
Match: sp|B8A9B2|MYBS1_ORYSI (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-39
Identity = 132/269 (49.07%), Postives = 151/269 (56.13%), Query Frame = 0


Query: 42  VPG-KTIEEIKHHYELLVEDVNLIESGCVPLPSYSSS------SDGSANHAGDEGTTKKN 101
           VPG ++ EE++ HYE LVEDV  I++G VPLP Y+                         
Sbjct: 56  VPGARSAEEVRRHYEALVEDVAAIDAGRVPLPRYAGEXXXXXXXXXXXXXXXXXXXXXXX 115

Query: 102 GHFGNCNGDSNHGSKTSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTR 161
                                  RKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++R
Sbjct: 116 XXXXXXXXXXXXXXXXXXXXXXXRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISR 175

Query: 162 TPTQVASHAQKYFIRLNSMNKERRRSSIHDITSVANGD-ISAAQGXXXXXXXXXXXXXXX 221
           TPTQVASHAQKYFIRLNSMN++RRRSSIHDITSV  GD ++A QG             XX
Sbjct: 176 TPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVTAGDQVAAQQGAPITGHQATGNPAXX 235

Query: 222 XXXXXXXXXXXXXXXXG------MYGGPTMGQPVGGPLV-SAVGTPVSLPAPAHMAYGVR 281
           XXXXXXXXXXXXXXXX       MY    MG PV G +V +AVGTPV  P P H  Y V 
Sbjct: 236 XXXXXXXXXXXXXXXXXXXXXXPMYSAAPMGHPVAGHMVPAAVGTPVVFP-PGHAPYVV- 295

Query: 282 APVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
                           P+ YP PP   H+
Sbjct: 296 ----------------PVGYPAPPAKMHQ 306

[Close]

BLAST of CsaV3_5G020780 vs. Swiss-Prot
Match: sp|Q8LH59|MYBS1_ORYSJ (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-39
Identity = 132/269 (49.07%), Postives = 151/269 (56.13%), Query Frame = 0


Query: 42  VPG-KTIEEIKHHYELLVEDVNLIESGCVPLPSYSSS------SDGSANHAGDEGTTKKN 101
           VPG ++ EE++ HYE LVEDV  I++G VPLP Y+                         
Sbjct: 56  VPGARSAEEVRRHYEALVEDVAAIDAGRVPLPRYAGEXXXXXXXXXXXXXXXXXXXXXXX 115

Query: 102 GHFGNCNGDSNHGSKTSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTR 161
                                  RKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++R
Sbjct: 116 XXXXXXXXXXXXXXXXXXXXXXXRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISR 175

Query: 162 TPTQVASHAQKYFIRLNSMNKERRRSSIHDITSVANGD-ISAAQGXXXXXXXXXXXXXXX 221
           TPTQVASHAQKYFIRLNSMN++RRRSSIHDITSV  GD ++A QG             XX
Sbjct: 176 TPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVTAGDQVAAQQGAPITGHQATGNPAXX 235

Query: 222 XXXXXXXXXXXXXXXXG------MYGGPTMGQPVGGPLV-SAVGTPVSLPAPAHMAYGVR 281
           XXXXXXXXXXXXXXXX       MY    MG PV G +V +AVGTPV  P P H  Y V 
Sbjct: 236 XXXXXXXXXXXXXXXXXXXXXXPMYSAAPMGHPVAGHMVPAAVGTPVVFP-PGHAPYVV- 295

Query: 282 APVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
                           P+ YP PP   H+
Sbjct: 296 ----------------PVGYPAPPAKMHQ 306

[Close]

BLAST of CsaV3_5G020780 vs. Swiss-Prot
Match: sp|Q2V9B0|MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-26
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 111 SRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL 170
           S S +ER++G+ WTE+EH+LFLLGL K GKGDWR ISRNFV TRTPTQVASHAQKYF+R 
Sbjct: 85  SNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 144

Query: 171 NSMNKERRRSSIHDITS 188
           +++N+ RRRSS+ DIT+
Sbjct: 145 SNLNRRRRRSSLFDITT 161

[Close]

BLAST of CsaV3_5G020780 vs. TrEMBL
Match: tr|A0A0A0KTA8|A0A0A0KTA8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G353650 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 2.9e-143
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP
Sbjct: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR
Sbjct: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. TrEMBL
Match: tr|A0A1S3CNM4|A0A1S3CNM4_CUCME (transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103502813 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 4.3e-142
Identity = 292/295 (98.98%), Postives = 293/295 (99.32%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKT+EEIKHHYELLVED
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQE RKG
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQEHRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSVANGDISA QGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP
Sbjct: 181 SIHDITSVANGDISATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR
Sbjct: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of CsaV3_5G020780 vs. TrEMBL
Match: tr|A0A2I4DKY9|A0A2I4DKY9_9ROSI (transcription factor DIVARICATA-like OS=Juglans regia OX=51240 GN=LOC108981184 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.7e-119
Identity = 246/295 (83.39%), Postives = 259/295 (87.80%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           MTVDE GS+S+WS EQDKAFENALA+HPED SDRWEKI+ DVPGKTIEEIKHHYELLV+D
Sbjct: 1   MTVDETGSNSVWSKEQDKAFENALATHPEDASDRWEKISADVPGKTIEEIKHHYELLVDD 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           V+LIESG VPLPSY SS +GSA+HAGDEG  KK GH GN N +SNHGSK SRSDQERRKG
Sbjct: 61  VSLIESGRVPLPSY-SSVEGSASHAGDEGNGKKGGHLGNYNSESNHGSKASRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV NGDISA QG      XXXXXXXXXXXXXXXXXXX      G+YG PTMGQP
Sbjct: 181 SIHDITSVGNGDISAPQGPITGQTXXXXXXXXXXXXXXXXXXXAGPAGIGVYGAPTMGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           +GG LVSAVGTPVSLP  AHMAYGVRAPVPG VVPGAP+NMGPM YPMP  SAHR
Sbjct: 241 IGGSLVSAVGTPVSLPTGAHMAYGVRAPVPGVVVPGAPMNMGPMAYPMPHASAHR 294

[Close]

BLAST of CsaV3_5G020780 vs. TrEMBL
Match: tr|B9HGD2|B9HGD2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G076200v3 PE=4 SV=2)

HSP 1 Score: 436.0 bits (1120), Expect = 6.6e-119
Identity = 221/296 (74.66%), Postives = 242/296 (81.76%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           M+VDE GS SLW+ E DKAFENALA++PED SDRWEKIA DVPGKT+EEIKHHYELLVED
Sbjct: 1   MSVDEGGSGSLWTREHDKAFENALATYPEDASDRWEKIAEDVPGKTLEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           +N IE+GCVPLP YSSSS+GS +HAGDEGT KK GH G+ N +SNHG+K SRSDQERRKG
Sbjct: 61  INQIEAGCVPLPCYSSSSEGSTSHAGDEGTGKKGGHLGHHNSESNHGNKASRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRS 180

Query: 181 SIHDITSVANGDISAAQG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQ 240
           SIHDITSV NGDI+  QG                                G+YG PT+GQ
Sbjct: 181 SIHDITSVGNGDIATPQGPITGQTNGSAVAGSSGKAAKQPPPHPAGPPGVGIYGPPTIGQ 240

Query: 241 PVGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           P+GGPLVSAVGTPV+L APAHMAYGVRAPVPG +VPGAP+NMGPMTYPMPPT+ HR
Sbjct: 241 PIGGPLVSAVGTPVNLSAPAHMAYGVRAPVPGAMVPGAPMNMGPMTYPMPPTTTHR 296

[Close]

BLAST of CsaV3_5G020780 vs. TrEMBL
Match: tr|B9H5N1|B9H5N1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G087700v3 PE=4 SV=2)

HSP 1 Score: 431.8 bits (1109), Expect = 1.2e-117
Identity = 239/295 (81.02%), Postives = 263/295 (89.15%), Query Frame = 0


Query: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60
           M+V+E GS SLW+ EQDKAFENALA++PED SD WEKI  DVPGKT+EEIKHHYELLVED
Sbjct: 1   MSVNEGGSGSLWTKEQDKAFENALATYPEDTSDWWEKITADVPGKTVEEIKHHYELLVED 60

Query: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTTKKNGHFGNCNGDSNHGSKTSRSDQERRKG 120
           ++ IE+GCVPLP+YSSSS+GS +HA DEGT KK GH G+ N DSN+G+K SRSDQERRKG
Sbjct: 61  ISQIEAGCVPLPNYSSSSEGSTSHAIDEGTGKKGGHLGHHNSDSNNGNKASRSDQERRKG 120

Query: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRS 180
           IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRS
Sbjct: 121 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRS 180

Query: 181 SIHDITSVANGDISAAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMYGGPTMGQP 240
           SIHDITSV NGD++A QG       XXXXXXXXXXXXXXXXXXXXX   G+YG PT+GQP
Sbjct: 181 SIHDITSVGNGDVAAPQGPITGQTNXXXXXXXXXXXXXXXXXXXXXPGVGIYGPPTIGQP 240

Query: 241 VGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 296
           +GGPLVSAVGTPV+LPAPAHMAYGVRAPVPGTVVPGAP+NM PMTYPMP T+ HR
Sbjct: 241 IGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNMVPMTYPMPHTTTHR 295

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149865.1	4.5e-143	100.00	PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] >XP_011655162....	[more]
XP_008465139.1	6.4e-142	98.98	PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465150.1 P...	[more]
XP_022962914.1	6.2e-137	95.25	transcription factor SRM1 [Cucurbita moschata] >XP_022962922.1 transcription fac...	[more]
XP_022990112.1	1.5e-135	94.58	transcription factor SRM1 [Cucurbita maxima] >XP_022990113.1 transcription facto...	[more]
XP_023536896.1	1.7e-134	94.24	transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536902.1 transcrip...	[more]

BLAST of CsaV3_5G020780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08520.1	4.8e-75	62.50	Duplicated homeodomain-like superfamily protein	[more]
AT5G58900.1	4.7e-46	51.60	Homeodomain-like transcriptional regulator	[more]
AT2G38090.1	6.2e-46	51.91	Duplicated homeodomain-like superfamily protein	[more]
AT1G49010.1	2.3e-45	45.25	Duplicated homeodomain-like superfamily protein	[more]
AT5G04760.1	3.7e-43	53.59	Duplicated homeodomain-like superfamily protein	[more]

BLAST of CsaV3_5G020780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FNN6\|SRM1_ARATH	8.7e-74	62.50	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]
sp\|Q8S9H7\|DIV_ANTMA	1.2e-46	51.58	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
sp\|B8A9B2\|MYBS1_ORYSI	3.1e-39	49.07	Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ...	[more]
sp\|Q8LH59\|MYBS1_ORYSJ	3.1e-39	49.07	Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=...	[more]
sp\|Q2V9B0\|MY1R1_SOLTU	2.3e-26	70.13	Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]

BLAST of CsaV3_5G020780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTA8\|A0A0A0KTA8_CUCSA	2.9e-143	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G353650 PE=4 SV=1	[more]
tr\|A0A1S3CNM4\|A0A1S3CNM4_CUCME	4.3e-142	98.98	transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103502813 PE=...	[more]
tr\|A0A2I4DKY9\|A0A2I4DKY9_9ROSI	1.7e-119	83.39	transcription factor DIVARICATA-like OS=Juglans regia OX=51240 GN=LOC108981184 P...	[more]
tr\|B9HGD2\|B9HGD2_POPTR	6.6e-119	74.66	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G076200v3 PE=...	[more]
tr\|B9H5N1\|B9H5N1_POPTR	1.2e-117	81.02	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G087700v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR017930	Myb_dom
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G020780.1	CsaV3_5G020780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 2.6E-8 score: 43.6 coord: 119..169 e-value: 3.2E-10 score: 50.0
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 12..55 e-value: 2.3E-8 score: 34.0 coord: 122..166 e-value: 2.5E-11 score: 43.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 122..167 e-value: 9.55897E-10 score: 52.1926
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 2.12631E-8 score: 48.7258
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 3..71 e-value: 5.8E-20 score: 72.9
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 121..173 e-value: 3.6E-17 score: 64.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..219
None	No IPR available	PANTHER	PTHR44191	FAMILY NOT NAMED	coord: 1..293
None	No IPR available	PANTHER	PTHR44191:SF2	DUPLICATED SANT DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..293
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 119..169 e-value: 2.6E-17 score: 60.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 114..171 score: 17.581
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 12..58 score: 6.597
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 10..66
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 117..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G020780	CSPI05G13890	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G020780	Cucsa.013870	Cucumber (Gy14) v1	cgycucB328
CsaV3_5G020780	CmaCh04G022380	Cucurbita maxima (Rimu)	cmacucB0890
CsaV3_5G020780	CmoCh04G023390	Cucurbita moschata (Rifu)	cmocucB0880
CsaV3_5G020780	Cp4.1LG01g19420	Cucurbita pepo (Zucchini)	cpecucB0549
CsaV3_5G020780	CsGy5G013750	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G020780	Carg17772	Silver-seed gourd	carcucB0516
CsaV3_5G020780	Cla009078	Watermelon (97103) v1	cucwmB442
CsaV3_5G020780	MELO3C005072	Melon (DHL92) v3.5.1	cucmeB352
CsaV3_5G020780	ClCG01G008050	Watermelon (Charleston Gray)	cucwcgB395
CsaV3_5G020780	Lsi09G008540	Bottle gourd (USVL1VR-Ls)	cuclsiB354
CsaV3_5G020780	MELO3C005072.2	Melon (DHL92) v3.6.1	cucmedB344
CsaV3_5G020780	Cla97C01G008410	Watermelon (97103) v2	cucwmbB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G020780	Silver-seed gourd	carcucB0870
CsaV3_5G020780	Cucurbita maxima (Rimu)	cmacucB0344
CsaV3_5G020780	Cucurbita moschata (Rifu)	cmocucB0340
CsaV3_5G020780	Cucurbita pepo (Zucchini)	cpecucB0227
CsaV3_5G020780	Wax gourd	cucwgoB468