CsaV3_5G013080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G013080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S5-like
Location	chr5 : 9446302 .. 9449069 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTATTAGTAGTGGCGCAGTGGTAAGGCTCCTGTATTCTTAGGGTTTTCCTCCCTCTATTTCAGCCGCCTTGTGTTCAAACAAACTCTTTCTTCCCATTTCTCCATTTCCTCCTCATCCTCTCGCTCTTCCTTACCCACCTGCTCCGCTAATATTTCCTTTTCTTGTTTGTGATTTTCAAATTCCTTCGGATTTAAATGCGAGATCTGTGTGTTTCTATCATTCTTCTTCCTTAACTTTTCGTTAATACGGCATCTTGTTTACTTATGTACAGAATAATGACTACTTAGGGATGTCAATTTTCCTTCGCAATATTCACTATTCAAGCCTTACTGAGGTTTGAGGAGTTTTCATTTCATAGACCCACTGATGCTATGATTTAGTTTGACCCTGTTTTTTTTTTTTTTTTTTTTTTTTAAATATTCTTTGTTTTTATTTTTGTGTCAAAATTATATTATTTGATCAATGACATGCTAATCTATTATTAGTAATAAGAAGTAAACTGTTGTTTATCTAATTTTTTTAGTTTGGATGTATTACTATTTTGTTGGAAGGCTTGAATGAATTCTAGAAATAATTTGTTTCAGGCGTGCGCCTTTTCTTCTTAATAAAGTTTTCATTAGGAATGGGTGTATTTACTTTCAGGTGAATTTGTTTCTTTTTCATTGCCTTTATAATTTCTTTATGGAAAAAATGTATTTGCCAATTTGAATCAATAGAGTCACTGATCCTTCCTATCATTTGGTTTTTTGGGATTTCTCTCTGGCTTGGTGTGATAGATGGGTGACTGAGGGAACATCCTTTATTGGAAATGCTCTTATTCTTCATAGTTTGTTTCTCATTTTCTCACCTTTACACTTTGCTGCTGCTCTCATTGACAGTCAACTCGTTTTGGAATTTGTGATATTGTGTGTATTTTGGGGTGAAAGTTGTATTTAATAAGACTAGTGACAGTTCATTATTGATTGTGGAGAAATTCATGACCATCTAATTTTAATTTGAACAAGGGAGAATGAAACTGATTGGGCAATTGGATACCCATTGCATGTTTTTATCCAACTGGTACTCATTTTTTCTTTGTTCTGATATTCTTCAGGAACAATGGCTGTTGAAGTTGATGTGGTTAACCAGGAACTGATCCAGCCTCATCACGATGTGAAGCTGTTCAACCGGTGGACCTTTGACGATGTCCAAGTGAATGACATCTCTCTGGTTGATTACGTTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCCGGGAGGTACTCTGTCAAGCGCTTTCGAAAAGCTCAGTGCCCAATTATTGAGAGGCTCACAAATTCTCTGATGATGCATGGAAGAAACAACGGGAAGAAACTCATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTGACCGATCTCAACCCAATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACAGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGAGAGGTTATTTTTCTTGTCTGTTTTACATTCTTAAAATGAACGCCATAGTCTAAATCTACCGGTTTTGAATTTCTTATTTGGACAAATCATATCTATTACTTGACTTTAAAGTTTTGATATCAGTGGAACAGCCAAATGCTTGTGTTTCTTGAAATAGTGTCAGTGTATTTATTGGTGTTTTCCCATCTAATACTTCTATTTCATCGAGTTTAGTTATCGTATATACTAAATTGATGAAACTAATAAACAGTTTGCTCATTGCCCCACTTCATGTGTGGATTCTTTCGAAATTTTTACCAACCATAAAATATTTGTAACCATAGGATTAAGTTATAAATGTTGATACTTTCAGACGTGGGATGGGAC

mRNA sequence

ATGGCTGTTGAAGTTGATGTGGTTAACCAGGAACTGATCCAGCCTCATCACGATGTGAAGCTGTTCAACCGGTGGACCTTTGACGATGTCCAAGTGAATGACATCTCTCTGGTTGATTACGTTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCCGGGAGGTACTCTGTCAAGCGCTTTCGAAAAGCTCAGTGCCCAATTATTGAGAGGCTCACAAATTCTCTGATGATGCATGGAAGAAACAACGGGAAGAAACTCATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTGACCGATCTCAACCCAATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACAGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Coding sequence (CDS)

ATGGCTGTTGAAGTTGATGTGGTTAACCAGGAACTGATCCAGCCTCATCACGATGTGAAGCTGTTCAACCGGTGGACCTTTGACGATGTCCAAGTGAATGACATCTCTCTGGTTGATTACGTTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCCGGGAGGTACTCTGTCAAGCGCTTTCGAAAAGCTCAGTGCCCAATTATTGAGAGGCTCACAAATTCTCTGATGATGCATGGAAGAAACAACGGGAAGAAACTCATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTGACCGATCTCAACCCAATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACAGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Protein sequence

MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR

Homology

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BLAST of CsaV3_5G013080 vs. NCBI nr
Match: XP_004140419.1 (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus] >XP_004140421.1 PREDICTED: 40S ribosomal protein S5 [Cucumis sativus] >KGN50866.1 hypothetical protein Csa_5G292230 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 2.3e-109
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. NCBI nr
Match: XP_008456864.1 (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo])

HSP 1 Score: 401.7 bits (1031), Expect = 1.5e-108
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 47  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 106

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 107 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 166

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 167 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 226

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 227 INAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]

BLAST of CsaV3_5G013080 vs. NCBI nr
Match: XP_008447164.1 (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 1.9e-108
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 73

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]

BLAST of CsaV3_5G013080 vs. NCBI nr
Match: XP_008447165.1 (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 1.9e-108
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. NCBI nr
Match: XP_004139812.1 (PREDICTED: 40S ribosomal protein S5 isoform X2 [Cucumis sativus] >KGN44229.1 hypothetical protein Csa_7G232530 [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 1.6e-107
Identity = 202/207 (97.58%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL Q HHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. TAIR10
Match: AT2G37270.1 (ribosomal protein 5B)

HSP 1 Score: 355.5 bits (911), Expect = 2.2e-98
Identity = 180/206 (87.38%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 2   AVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSV 61
           + E+D   Q+  Q  ++VKLFNRW+FDDV V DISLVDY+GV P+KHAT+VPHTAGRYSV
Sbjct: 4   SAEIDAEIQQ--QLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSV 63

Query: 62  KRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVN 121
           KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+VN
Sbjct: 64  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 123

Query: 122 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELI 181
           SGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADELI
Sbjct: 124 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELI 183

Query: 182 NAAKGSSNSYAIKKKDEIERVAKANR 208
           NAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 NAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. TAIR10
Match: AT3G11940.1 (ribosomal protein 5A)

HSP 1 Score: 353.2 bits (905), Expect = 1.1e-97
Identity = 179/206 (86.89%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 2   AVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSV 61
           A +VD   Q+ +   ++VKLFNRWT+DDV V DISLVDY+GV  AKHAT+VPHTAGRYSV
Sbjct: 4   AADVDAEIQQALT--NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSV 63

Query: 62  KRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVN 121
           KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+VN
Sbjct: 64  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 123

Query: 122 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELI 181
           SGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADELI
Sbjct: 124 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELI 183

Query: 182 NAAKGSSNSYAIKKKDEIERVAKANR 208
           NAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 NAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. TAIR10
Match: ATCG01240.1 (ribosomal protein S7)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 74  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 133
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 134 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 193
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 194 AIKKKDEIERVAKANR 208
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]

BLAST of CsaV3_5G013080 vs. TAIR10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 74  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 133
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 134 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 193
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 194 AIKKKDEIERVAKANR 208
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]

BLAST of CsaV3_5G013080 vs. Swiss-Prot
Match: sp|O65731|RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-97
Identity = 178/190 (93.68%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIIERLTN 77
           +VKLFNRW+FDDVQ++D+SL+DY+GV P+KHATYVPHTAGRYSVKRFRKAQCPI+ERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 198 EIERVAKANR 208
           EIERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]

BLAST of CsaV3_5G013080 vs. Swiss-Prot
Match: sp|Q9ZUT9|RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.9e-97
Identity = 180/206 (87.38%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 2   AVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSV 61
           + E+D   Q+  Q  ++VKLFNRW+FDDV V DISLVDY+GV P+KHAT+VPHTAGRYSV
Sbjct: 4   SAEIDAEIQQ--QLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSV 63

Query: 62  KRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVN 121
           KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+VN
Sbjct: 64  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 123

Query: 122 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELI 181
           SGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADELI
Sbjct: 124 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELI 183

Query: 182 NAAKGSSNSYAIKKKDEIERVAKANR 208
           NAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 NAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. Swiss-Prot
Match: sp|P51427|RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-96
Identity = 179/206 (86.89%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 2   AVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSV 61
           A +VD   Q+ +   ++VKLFNRWT+DDV V DISLVDY+GV  AKHAT+VPHTAGRYSV
Sbjct: 4   AADVDAEIQQALT--NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSV 63

Query: 62  KRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVN 121
           KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+VN
Sbjct: 64  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 123

Query: 122 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELI 181
           SGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADELI
Sbjct: 124 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELI 183

Query: 182 NAAKGSSNSYAIKKKDEIERVAKANR 208
           NAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 NAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. Swiss-Prot
Match: sp|Q5E988|RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-83
Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIIERLTN 77
           D+KLF +W+ DDVQ+NDISL DY+ V   K+A Y+PH+AGRY+ KRFRKAQCPI+ERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EIERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of CsaV3_5G013080 vs. Swiss-Prot
Match: sp|P46782|RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4)

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-83
Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 18  DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIIERLTN 77
           D+KLF +W+ DDVQ+NDISL DY+ V   K+A Y+PH+AGRY+ KRFRKAQCPI+ERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EIERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of CsaV3_5G013080 vs. TrEMBL
Match: tr|A0A0A0KSZ1|A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.5e-109
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. TrEMBL
Match: tr|A0A1S3C3S7|A0A1S3C3S7_CUCME (40S ribosomal protein S5-like OS=Cucumis melo OX=3656 GN=LOC103496679 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 9.7e-109
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 47  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 106

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 107 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 166

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 167 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 226

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 227 INAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]

BLAST of CsaV3_5G013080 vs. TrEMBL
Match: tr|A0A1S3BGS8|A0A1S3BGS8_CUCME (40S ribosomal protein S5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489682 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.3e-108
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_5G013080 vs. TrEMBL
Match: tr|A0A1S3BGS9|A0A1S3BGS9_CUCME (40S ribosomal protein S5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489682 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.3e-108
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 73

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]

BLAST of CsaV3_5G013080 vs. TrEMBL
Match: tr|A0A0A0K5K0|A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107
Identity = 202/207 (97.58%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQEL Q HHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

The following BLAST results are available for this feature:

BLAST of CsaV3_5G013080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140419.1	2.3e-109	100.00	PREDICTED: 40S ribosomal protein S5 [Cucumis sativus] >XP_004140421.1 PREDICTED:...	[more]
XP_008456864.1	1.5e-108	98.55	PREDICTED: 40S ribosomal protein S5-like [Cucumis melo]	[more]
XP_008447164.1	1.9e-108	98.07	PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo]	[more]
XP_008447165.1	1.9e-108	98.07	PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo]	[more]
XP_004139812.1	1.6e-107	97.58	PREDICTED: 40S ribosomal protein S5 isoform X2 [Cucumis sativus] >KGN44229.1 hyp...	[more]

BLAST of CsaV3_5G013080 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37270.1	2.2e-98	87.38	ribosomal protein 5B	[more]
AT3G11940.1	1.1e-97	86.89	ribosomal protein 5A	[more]
ATCG01240.1	2.1e-08	35.29	ribosomal protein S7	[more]
ATCG00900.1	2.1e-08	35.29	Ribosomal protein S7p/S5e family protein	[more]

BLAST of CsaV3_5G013080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65731\|RS5_CICAR	1.8e-97	93.68	40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1	[more]
sp\|Q9ZUT9\|RS51_ARATH	3.9e-97	87.38	40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1	[more]
sp\|P51427\|RS52_ARATH	2.0e-96	86.89	40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2	[more]
sp\|Q5E988\|RS5_BOVIN	2.5e-83	80.00	40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3	[more]
sp\|P46782\|RS5_HUMAN	2.5e-83	80.00	40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4	[more]

BLAST of CsaV3_5G013080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSZ1\|A0A0A0KSZ1_CUCSA	1.5e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292230 PE=3 SV=1	[more]
tr\|A0A1S3C3S7\|A0A1S3C3S7_CUCME	9.7e-109	98.55	40S ribosomal protein S5-like OS=Cucumis melo OX=3656 GN=LOC103496679 PE=3 SV=1	[more]
tr\|A0A1S3BGS8\|A0A1S3BGS8_CUCME	1.3e-108	98.07	40S ribosomal protein S5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489682...	[more]
tr\|A0A1S3BGS9\|A0A1S3BGS9_CUCME	1.3e-108	98.07	40S ribosomal protein S5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489682...	[more]
tr\|A0A0A0K5K0\|A0A0A0K5K0_CUCSA	1.1e-107	97.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232530 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020606	Ribosomal_S7_CS
IPR005716	Ribosomal_S5/S7_euk/arc
IPR023798	Ribosomal_S7_dom
IPR000235	Ribosomal_S5/S7
IPR036823	Ribosomal_S7_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G013080.1	CsaV3_5G013080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	G3DSA:1.10.455.10		coord: 4..207 e-value: 7.4E-101 score: 337.6
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	SSF47973	Ribosomal protein S7	coord: 20..207
IPR000235	Ribosomal protein S5/S7	PIRSF	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 1..207 e-value: 9.9E-40 score: 134.5
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 4..207
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 62..207 e-value: 2.9E-36 score: 124.2
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	TIGRFAM	TIGR01028	TIGR01028	coord: 19..207 e-value: 1.2E-89 score: 296.9
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	CDD	cd14867	uS7_Eukaryote	coord: 20..207 e-value: 1.94765E-133 score: 374.583
None	No IPR available	PANTHER	PTHR11205:SF31	40S RIBOSOMAL PROTEIN S5-1-RELATED	coord: 4..207
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 73..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G013080	CSPI05G12700	Wild cucumber (PI 183967)	cpicucB299
CsaV3_5G013080	Cucsa.373460	Cucumber (Gy14) v1	cgycucB566
CsaV3_5G013080	CsGy5G009840	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G013080	Cla016897	Watermelon (97103) v1	cucwmB463
CsaV3_5G013080	MELO3C020049	Melon (DHL92) v3.5.1	cucmeB373
CsaV3_5G013080	ClCG11G001050	Watermelon (Charleston Gray)	cucwcgB377
CsaV3_5G013080	Lsi11G000060	Bottle gourd (USVL1VR-Ls)	cuclsiB363
CsaV3_5G013080	MELO3C020049.2	Melon (DHL92) v3.6.1	cucmedB376
CsaV3_5G013080	Cla97C11G207420	Watermelon (97103) v2	cucwmbB375
CsaV3_5G013080	Bhi07G000142	Wax gourd	cucwgoB528

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_5G013080	CsaV3_UNG013130	Cucumber (Chinese Long) v3	cuccucB208

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G013080	Silver-seed gourd	carcucB0205
CsaV3_5G013080	Silver-seed gourd	carcucB0388
CsaV3_5G013080	Cucurbita maxima (Rimu)	cmacucB0900
CsaV3_5G013080	Cucurbita maxima (Rimu)	cmacucB0876
CsaV3_5G013080	Cucurbita moschata (Rifu)	cmocucB0862
CsaV3_5G013080	Cucurbita moschata (Rifu)	cmocucB0884
CsaV3_5G013080	Cucurbita pepo (Zucchini)	cpecucB0532
CsaV3_5G013080	Cucurbita pepo (Zucchini)	cpecucB0555
CsaV3_5G013080	Watermelon (Charleston Gray)	cucwcgB379
CsaV3_5G013080	Watermelon (97103) v1	cucwmB465
CsaV3_5G013080	Watermelon (97103) v2	cucwmbB376
CsaV3_5G013080	Wax gourd	cucwgoB521