CsaV3_5G010980 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G010980
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	major pollen allergen Ole e 6-like
Location	chr5 : 6980584 .. 6981526 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCCACTCACAAAAGCAAGACTTGAAACATCACCAAAAGGCAATAATAACACACACCAAAGCCAAGAAAATATAAATAAAAAAAAAATGGCCAACAAAATGATTGCATTGTTCTTGATGTGCATTGTTGTGGTAGCTGCTTTGCAATTTGCCAATGCCAATAAAGAGGATGTAGCCAAATATGAGGCCAAGTTCGATGCCAAGTACAAGTCTTGCTTTGAAACTTGTGAGAAGGAATGCCTTAGGTACGGCAGTGGTCAAAGCTATTGTGAAGTTAAATGTGACGAGGATTGTGATGAAAAAGAAGCTGCTGGTACTCTCTCTTCTCTCTATCTTTCTCTATCTTTTGATCAATATACAAGAAATGCATTAATTTTTTTTTTATCGATTTTATATATTTTTGTAAATTTTGATTCTAAATAGAGTTTTATCTTTTCATATTAATTTTATTTATTTTTCTTTTTTCTTTTTTTACAGATAAGCTCCACATTGAATTGCATTGAATGATGAGGAACAAAAGGAAAGAAGATCTCTCTTGAGAAGGAAGGATCTAACAATACTATATCAAAATCAAACTTGTGATGTGATTTTAAGTATTAAAATTCATAAAGTTCTTGGCCTTTGGTGTTATCAATATATATGTACCGATCATTTTATCATTGGTGATCGAGCCTTATTTTTATTCCAAAAACAAAATATATTTATAATTGTGTTCATCAAATCTTATCCACATTTTCTTCGATCTTCAATCTTTAATCTTTATTAATTGATGGTACATTTTGTAACAAAAAATAATATAATGCCCAATTCATTAAGCAAGATCGTCCAATTCATTCCGGAGAAAAAACGCTCTAAACAAAATAATATAATGCACACAATTTCCTTCTTTCTCACTTGATCTAATGATGTATAGTACAATTTTCTTCTTTCATTGATTATTCC

mRNA sequence

ATGGCCAACAAAATGATTGCATTGTTCTTGATGTGCATTGTTGTGGTAGCTGCTTTGCAATTTGCCAATGCCAATAAAGAGGATGTAGCCAAATATGAGGCCAAGTTCGATGCCAAGTACAAGTCTTGCTTTGAAACTTGTGAGAAGGAATGCCTTAGGTACGGCAGTGGTCAAAGCTATTGTGAAGTTAAATGTGACGAGGATTGTGATGAAAAAGAAGCTGCTGATAAGCTCCACATTGAATTGCATTGA

Coding sequence (CDS)

ATGGCCAACAAAATGATTGCATTGTTCTTGATGTGCATTGTTGTGGTAGCTGCTTTGCAATTTGCCAATGCCAATAAAGAGGATGTAGCCAAATATGAGGCCAAGTTCGATGCCAAGTACAAGTCTTGCTTTGAAACTTGTGAGAAGGAATGCCTTAGGTACGGCAGTGGTCAAAGCTATTGTGAAGTTAAATGTGACGAGGATTGTGATGAAAAAGAAGCTGCTGATAAGCTCCACATTGAATTGCATTGA

Protein sequence

MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSYCEVKCDEDCDEKEAADKLHIELH

Homology

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BLAST of CsaV3_5G010980 vs. NCBI nr
Match: XP_004146471.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN50739.1 hypothetical protein Csa_5G222980 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXEAADKLHIELH 84
          XXXXXXXXXXX EAADKLHIELH
Sbjct: 61 XXXXXXXXXXXKEAADKLHIELH 83

[Close]

BLAST of CsaV3_5G010980 vs. NCBI nr
Match: XP_008456958.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MANKMIALFLMCIVVVAALQFANANKED-VAKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MA KMIALFLMCIVVVAALQFA+ANKED VAKY XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXEAADKLHIELH 84
          XXXXXXXXXXXX E ADKLHIELH
Sbjct: 61 XXXXXXXXXXXXKEVADKLHIELH 84

[Close]

BLAST of CsaV3_5G010980 vs. TrEMBL
Match: tr|A0A0A0KPA7|A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXEAADKLHIELH 84
          XXXXXXXXXXX EAADKLHIELH
Sbjct: 61 XXXXXXXXXXXKEAADKLHIELH 83

[Close]

BLAST of CsaV3_5G010980 vs. TrEMBL
Match: tr|A0A1S3C530|A0A1S3C530_CUCME (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MANKMIALFLMCIVVVAALQFANANKED-VAKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MA KMIALFLMCIVVVAALQFA+ANKED VAKY XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXEAADKLHIELH 84
          XXXXXXXXXXXX E ADKLHIELH
Sbjct: 61 XXXXXXXXXXXXKEVADKLHIELH 84

The following BLAST results are available for this feature:

BLAST of CsaV3_5G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146471.1	1.1e-09	98.80	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus] >KGN50739.1 hypo...	[more]
XP_008456958.1	7.2e-06	92.86	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

BLAST of CsaV3_5G010980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G010980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G010980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPA7\|A0A0A0KPA7_CUCSA	7.1e-10	98.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]
tr\|A0A1S3C530\|A0A1S3C530_CUCME	4.8e-06	92.86	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036466	Pollen_allergen_ole-e-6_sf
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G010980.1	CsaV3_5G010980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 43..79 e-value: 4.7E-12 score: 45.6
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..79
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	G3DSA:1.10.287.720		coord: 36..81 e-value: 3.3E-16 score: 60.5
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	SSF111388	Pollen allergen ole e 6	coord: 37..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G010980	CSPI05G11590	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G010980	CsGy5G008840	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G010980	MELO3C020152	Melon (DHL92) v3.5.1	cucmeB382
CsaV3_5G010980	ClCG07G005130	Watermelon (Charleston Gray)	cucwcgB422
CsaV3_5G010980	Lsi04G010180	Bottle gourd (USVL1VR-Ls)	cuclsiB394
CsaV3_5G010980	MELO3C020152.2	Melon (DHL92) v3.6.1	cucmedB363
CsaV3_5G010980	Cla97C07G133490	Watermelon (97103) v2	cucwmbB407
CsaV3_5G010980	Bhi07G000413	Wax gourd	cucwgoB524

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G010980	Cucumber (Chinese Long) v3	cuccucB203
CsaV3_5G010980	Silver-seed gourd	carcucB0708
CsaV3_5G010980	Silver-seed gourd	carcucB0948
CsaV3_5G010980	Cucumber (Gy14) v2	cgybcucB292
CsaV3_5G010980	Cucumber (Gy14) v1	cgycucB217
CsaV3_5G010980	Cucurbita maxima (Rimu)	cmacucB0350
CsaV3_5G010980	Cucurbita maxima (Rimu)	cmacucB0883
CsaV3_5G010980	Cucurbita maxima (Rimu)	cmacucB0884
CsaV3_5G010980	Cucurbita moschata (Rifu)	cmocucB0346
CsaV3_5G010980	Cucurbita moschata (Rifu)	cmocucB0872
CsaV3_5G010980	Cucurbita moschata (Rifu)	cmocucB0873
CsaV3_5G010980	Cucurbita pepo (Zucchini)	cpecucB0233
CsaV3_5G010980	Cucurbita pepo (Zucchini)	cpecucB0541
CsaV3_5G010980	Cucurbita pepo (Zucchini)	cpecucB0542
CsaV3_5G010980	Wild cucumber (PI 183967)	cpicucB357
CsaV3_5G010980	Bottle gourd (USVL1VR-Ls)	cuclsiB386
CsaV3_5G010980	Watermelon (Charleston Gray)	cucwcgB384
CsaV3_5G010980	Watermelon (97103) v1	cucwmB410
CsaV3_5G010980	Watermelon (97103) v2	cucwmbB381