CsaV3_5G010880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G010880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S26
Locationchr5 : 6886129 .. 6889723 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCGTGTCATGACATAGTTTGTCGAAATCTCATTATTATCCGTAGTCGATTTTGTAAATGTTGAAACCGAACTTTGATATCGATGAGTAAGAGTTAGTTAATCAGTTTAACACTTAAAAATACTTTTTGAAAATTTTCGATATAAAACTTTCTAAAATTCATCCTTACGTTAAAAGAGTTTTATTTTTGCAATTTTACTTTTGTATTTGTTGGTTTGGTTCGGCGGGACCGGAGGTCTATATAAAGCGTTTACCGGTACGGATCCACTTATCTCACGCTTAGCCTTTGCCCACACAAAACCCTAATCGGCTGCCTCTCTCTCTCTGCTTCATTTGAAGATCTCCAACTTTGTAACAATGGTAAGATTATTATCCCCTTACTATTTCCTCTGAGTTTTCTTCTTCTAACTCCTTCTCCTCTCATCTTTTCTGCTTTTGTTTCTCCCAGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATTCGCTGCTCCAACTGCGGGAAATGCTGCCCTAAGGTTATTGTTTTATACATCTTTCTCCCCAATTCTTGCTTGCATTAATTGATTGTTTATTTATTGACAGGGGTCATTTTTCCTTTTCGGAATTGGGTCATTTTGTGTTTTGTTAGGTTCTGCTAATTGCTTGATTGCAATTATTACTAGTGTGTTTATGATTGATTCATCTAGAAATTGCGAGGGATAAGTGTCTGCCAATTTCTGGGGATATGATTTTTTTTATGTAGAATGTTAGTATCTATACGAATGTGAATCTATATTGTTGTTAAGTGATTGCTTGGGTGGTTTTTAAGATAGGTTAGAAAGGTAGACGTTATATAAAAGGGTTTTGTTAAAATAAAATGGAAATCTCGTAAGCCTTCCAAAACTAAGCGCTTTATTAGATTTGAGGCTCGTCCGAAGGCAAGATCCTAACTTTTAGCCTTGGGTATGCCTTCTTTGGACCATAAAAGGACTGTTAGCTTGTATGAGAAAGTTTACCCTTCCCTGAAAATGCACCAAGGCGTAAAGTAAAAGTCTTTACACCTCTTGGAAGGATTAGAAAAATAACACAAGTTACCCAGTTTCTATAGATACGAAGGGTTACTTTGTGTTTGTAATGTTAATATATGACTCGTGGCAATTCAACACTCCCTATGACTATCTAAGTTTCAAGGCTTTTGAAGATAAAACTGTATAAATAAGCCAATCTTCATGGTGGTGATCTTAACATTCACTTATTAGAAATTTGGCTGAGTTATAAAAGTATCAATGAAATTGCCATTTGTTTAAAAAATTATTATTGTTAAAGTTGCAATATATTATCCTTAATTTTTCCTATAATTTGCCAAACTACTCTTCAAGTAGAAATCCATTAGAATTTTGAATGAAAATTGGAACCTTGAATGGATATGACAATGACTTTGAACAGTGTGAAGTGGTATTCAAGTTTCAATTTCTTTTCAAGTCTCCACCTCACTGTTTCAAGTTTCAATTTTCATCCAATATTTGAATTGATTTCTACTTTAAGGGTTGTTTTGAAATGCTTATTAAATCTTGAGACCACCATTTGTCGTCTTATGGGCAAAGAATATGGGTATTTTTGAAACATTGCATAAGCACACTAGTTTTGGACAATGATTTTTCAGTGCCTGTTGGTGATTGAACAAGAGCGGTTCAATTTTATTTTTTTCCAAGAGATGAAGTTAATTAAATCTAACTTCATTAATTTTGGTTGATGAGAATAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCGTAAGTTATTCTGTTCTCTCATGATATATTTTGGTTGCTTTATTTCAAATAGCAGTAATTTTTTTTTTCATATCTGATATATATCCCTTTTTATTTTTTCTGTGCAGAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGTTAGTCTTTGCAAAAATTATTTATAATGTTGATTCATAACGAAGTAACCATATTAACAGTGAATTAATTTTTTTTATGGTTTTGATTCATCGTGAAGTATTGATGTTTTCATTGAATTTGATAATGCTAGTTTTACTTTGCTAAATCCATGCTTACATTATAATGTTTGATGAGCTCAAATTCTTATGGTAGGTAGCAGAAACAGTGTTTGCATCATAGTGTGACTTTTTAACTCTTAAGCTTCTTTTATAGTCATTGAGGATTATGAGAAACTCCAAACTCCTAGGATCCATCTACAATTTCTAAAGATTAATTAAGACATAGATTTGTGAAATTCTTTTAGTTGGTATTTTGTTCGCTGGATGTTTGTTACCAAATGAATATATTAATGTAATTACTATGTATTAAAAAAACAATCCATCAGACATCATTATATTTAAAAAAACTTGGTTCAAATGGTTCCCCCCTACAATTACTGGCGGTTTCACATGTTAAACTCCTACTTGTTTTGATTGTGTATATTTTATTTTAATGATGATAACGACTATGACTCATCGTATGCTTGTTAGTACATGCAACTCAGTCTTGTTTGTTGTCTAGTCGTGCCTAAGCATGCTTACTTGTGGAAAATTTCGTTTGATAGTAGTGATGCTTGGAGTGTCTGTTGCCTTATCCCATTTCTTTTTTTATTTCAGGAGGATCAGGCAAAGCCCGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAAAAGAAACCTTTTTATGGCTTCTACGAGTAAGTCGTAGGGTTCTTTTATAGGCGCTCTTTTATAGTTTGGTTGTTTCTTATGTGGATGAAAGTGAATTTTTGAATCAATATGGAAACGAACTTATCCGAGAATTTTGCAACTTGGAATGAGCTAAAGACCGTTTATTGAGTTATCTAATGTGTTTTCTTCACTTTCTTGTTTGGGTGGGATTGGATTTTCTCCCATTTATTAACAATATGGAATTTGAATGTCTGGTCGAGAATTTATTGATGTCAGTTGGCCAGATTGTTTGGTTTTTCCTAATACCTATATGAGGGGGAAACTAGAGAACTTAAAAATTAAATCAATGGAGGAAAAAACTCCATGACATTTAATTTTACCCAACGGGTAAGGTTATGGATACTATTCTTATTAATTGTTGGTCATATTCAAAGGTTCAAGATGTGTTGAATATCAGCCAAAGTAGGTATTTATGGAAAAATGATGAAAAGAAAGGATGGTGGCAAACTTAGCAATTAGGCTCAAAATGTTAGATCTAACTTTTAAATCATATCACTAATTGGAGTCTTGAGTCTCACAGATAGAATGAAAAGTGTTGTATTTATAATGAAATTTTATTGATGGATTAATGAGTTCGAATAGCACATGTAGTTGGATTGGTTTCTTTTATCTTGTTTACTTAAATATATTGTTATTGTTGTGCCCCTAATTATGATTTATCATATTTGTT

mRNA sequence

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATTCGCTGCTCCAACTGCGGGAAATGCTGCCCTAAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGGCAAAGCCCGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATTCGCTGCTCCAACTGCGGGAAATGCTGCCCTAAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGGCAAAGCCCGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV
Homology
[Close]
BLAST of CsaV3_5G010880 vs. NCBI nr
Match: XP_004146441.1 (PREDICTED: 40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >KGN50730.1 hypothetical protein Csa_5G220930 [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 1.3e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of CsaV3_5G010880 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 3.6e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGIPARV 129

[Close]
BLAST of CsaV3_5G010880 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 3.6e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGVPARV 129

[Close]
BLAST of CsaV3_5G010880 vs. NCBI nr
Match: GAV62493.1 (LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 252.7 bits (644), Expect = 6.9e-64
Identity = 122/128 (95.31%), Postives = 124/128 (96.88%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 240 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 299

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQRFIRRR+D  KPGQPGQAPRP
Sbjct: 300 QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDIPKPGQPGQAPRP 359

Query: 121 VGAGNPAR 129
            GAGNP R
Sbjct: 360 AGAGNPVR 367

[Close]
BLAST of CsaV3_5G010880 vs. NCBI nr
Match: POE85827.1 (superoxide dismutase [mn], mitochondrial [Quercus suber])

HSP 1 Score: 250.4 bits (638), Expect = 3.4e-63
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 297 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 356

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QY LPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R PPQRF+RRR+DQ +PGQPGQAPRP
Sbjct: 357 QYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFLRRRDDQPRPGQPGQAPRP 416

Query: 121 VGAGNPAR 129
            GAGNPAR
Sbjct: 417 AGAGNPAR 424

[Close]
BLAST of CsaV3_5G010880 vs. TAIR10
Match: AT3G56340.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.1e-55
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G PA
Sbjct: 121 AG-GAPA 126

[Close]
BLAST of CsaV3_5G010880 vs. TAIR10
Match: AT2G40510.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 204.1 bits (518), Expect = 5.1e-53
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQA 117

[Close]
BLAST of CsaV3_5G010880 vs. TAIR10
Match: AT2G40590.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 204.1 bits (518), Expect = 5.1e-53
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQA 117

[Close]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match: sp|Q9LYK9|RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-54
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G PA
Sbjct: 121 AG-GAPA 126

[Close]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match: sp|P49206|RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 9.2e-52
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQA 117

[Close]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match: sp|Q8LPJ7|RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 9.2e-52
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED  KPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQA 117

[Close]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match: sp|P49216|RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-46
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQ 109
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRRED+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDR 107

[Close]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match: sp|O45499|RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-38
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R   A+PG PG  PRP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

[Close]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match: tr|A0A1S3C5M1|A0A1S3C5M1_CUCME (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.9e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match: tr|A0A0A0KM45|A0A0A0KM45_CUCSA (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.9e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match: tr|A0A1Q3B3V8|A0A1Q3B3V8_CEPFO (Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06016 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.6e-64
Identity = 122/128 (95.31%), Postives = 124/128 (96.88%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 240 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 299

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQRFIRRR+D  KPGQPGQAPRP
Sbjct: 300 QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDIPKPGQPGQAPRP 359

Query: 121 VGAGNPAR 129
            GAGNP R
Sbjct: 360 AGAGNPVR 367

[Close]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match: tr|A0A2P4JYI1|A0A2P4JYI1_QUESU (Superoxide dismutase [mn], mitochondrial OS=Quercus suber OX=58331 GN=CFP56_07164 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-63
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 297 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 356

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QY LPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R PPQRF+RRR+DQ +PGQPGQAPRP
Sbjct: 357 QYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFLRRRDDQPRPGQPGQAPRP 416

Query: 121 VGAGNPAR 129
            GAGNPAR
Sbjct: 417 AGAGNPAR 424

[Close]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match: tr|A0A2N9J4S0|A0A2N9J4S0_FAGSY (40S ribosomal protein S26 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60349 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120
           QY LPKLYAKMQYCVSCAIHSHVVRVRSRT+RR R+PPQRF+RRRED  +PGQPGQAPRP
Sbjct: 61  QYVLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRKREPPQRFLRRREDTPRPGQPGQAPRP 120

Query: 121 VGAGNPAR 129
            GAGNPAR
Sbjct: 121 AGAGNPAR 128

The following BLAST results are available for this feature:
BLAST of CsaV3_5G010880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146441.11.3e-67100.00PREDICTED: 40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICT... [more]
XP_022943123.13.6e-6596.9040S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso... [more]
XP_023529394.13.6e-6596.9040S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo][more]
GAV62493.16.9e-6495.31LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-co... [more]
POE85827.13.4e-6393.75superoxide dismutase [mn], mitochondrial [Quercus suber][more]
BLAST of CsaV3_5G010880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56340.11.1e-5584.25Ribosomal protein S26e family protein[more]
AT2G40510.15.1e-5385.47Ribosomal protein S26e family protein[more]
AT2G40590.15.1e-5385.47Ribosomal protein S26e family protein[more]
BLAST of CsaV3_5G010880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LYK9|RS263_ARATH2.0e-5484.2540S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1[more]
sp|P49206|RS261_ARATH9.2e-5285.4740S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2[more]
sp|Q8LPJ7|RS262_ARATH9.2e-5285.4740S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2[more]
sp|P49216|RS26_ORYSJ1.2e-4682.4140S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2... [more]
sp|O45499|RS26_CAEEL1.5e-3868.3340S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1[more]
BLAST of CsaV3_5G010880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5M1|A0A1S3C5M1_CUCME8.9e-68100.0040S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1[more]
tr|A0A0A0KM45|A0A0A0KM45_CUCSA8.9e-68100.0040S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1[more]
tr|A0A1Q3B3V8|A0A1Q3B3V8_CEPFO4.6e-6495.31Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_... [more]
tr|A0A2P4JYI1|A0A2P4JYI1_QUESU2.3e-6393.75Superoxide dismutase [mn], mitochondrial OS=Quercus suber OX=58331 GN=CFP56_0716... [more]
tr|A0A2N9J4S0|A0A2N9J4S0_FAGSY1.1e-6292.9740S ribosomal protein S26 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60349 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR038551Ribosomal_S26e_sf
IPR000892Ribosomal_S26e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019430 removal of superoxide radicals
cellular_component GO:0005840 ribosome
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G010880.1CsaV3_5G010880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 1..106
e-value: 9.2E-55
score: 183.6
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 1..128
IPR000892Ribosomal protein S26ePROSITEPS00733RIBOSOMAL_S26Ecoord: 73..80
IPR038551Ribosomal protein S26e superfamilyGENE3DG3DSA:3.30.1740.20coord: 1..107
e-value: 7.0E-53
score: 179.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..129
NoneNo IPR availablePANTHERPTHR12538:SF640S RIBOSOMAL PROTEIN S26-1-RELATEDcoord: 1..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G010880CSPI06G02110Wild cucumber (PI 183967)cpicucB357
CsaV3_5G010880CSPI05G11480Wild cucumber (PI 183967)cpicucB285
CsaV3_5G010880Cucsa.143990Cucumber (Gy14) v1cgycucB217
CsaV3_5G010880CmaCh15G001620Cucurbita maxima (Rimu)cmacucB0350
CsaV3_5G010880CmaCh04G001080Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G010880CmoCh15G001760Cucurbita moschata (Rifu)cmocucB0346
CsaV3_5G010880CmoCh04G011340Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G010880CmoCh04G001040Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G010880Cp4.1LG13g07660Cucurbita pepo (Zucchini)cpecucB0233
CsaV3_5G010880CsGy5G008750Cucumber (Gy14) v2cgybcucB232
CsaV3_5G010880CsGy6G002180Cucumber (Gy14) v2cgybcucB292
CsaV3_5G010880Carg00170Silver-seed gourdcarcucB0708
CsaV3_5G010880Carg24478Silver-seed gourdcarcucB0948
CsaV3_5G010880Cla007289Watermelon (97103) v1cucwmB410
CsaV3_5G010880MELO3C020141Melon (DHL92) v3.5.1cucmeB382
CsaV3_5G010880ClCG11G005710Watermelon (Charleston Gray)cucwcgB384
CsaV3_5G010880ClCG07G005050Watermelon (Charleston Gray)cucwcgB422
CsaV3_5G010880Lsi03G002680Bottle gourd (USVL1VR-Ls)cuclsiB386
CsaV3_5G010880Lsi04G010250Bottle gourd (USVL1VR-Ls)cuclsiB394
CsaV3_5G010880MELO3C020141.2Melon (DHL92) v3.6.1cucmedB363
CsaV3_5G010880Cla97C11G212640Watermelon (97103) v2cucwmbB381
CsaV3_5G010880Cla97C07G133400Watermelon (97103) v2cucwmbB407
CsaV3_5G010880Bhi07G000422Wax gourdcucwgoB524
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_5G010880CsaV3_6G002260Cucumber (Chinese Long) v3cuccucB203
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G010880Watermelon (Charleston Gray)cucwcgB404
CsaV3_5G010880Watermelon (97103) v1cucwmB456
CsaV3_5G010880Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G010880Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G010880Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G010880Bottle gourd (USVL1VR-Ls)cuclsiB359