Carg00170 (gene) Silver-seed gourd

Overview
NameCarg00170
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S26
LocationCucurbita_argyrosperma_scaffold_001 : 883468 .. 885614 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAGCATTTTGCCCACAAAAAAACCCTAATCGGTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTGAAACAATGGTAAGATCATTAGCCCGTCACCTTTTCCTCTGAATCTTCTTGTTTTAAATCGTTCTCCGTTCATCTTTTTCTGCTTTTGGTTCTGCCAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGTTATTGTTTTACTCTTCTTTCTGCGTGATTTTTGCGTGCATTTTTAAGTAGTTTAATGGCGGCGGTCAAATCTATACGTTCTGCTAATGTTTCCTTTGCGGAATTGTGTCATTTTGTTTTTAATTTTTGTTTTGATGCTTTATTGCTAGTATTACTGGAGTATTTGTGATTGATTGATCTAGAAATAAGTATCCGCCAAGTTCTGGGGATATGTTAGTATCTATAGGAGTTTGTATTTGTATTGTTGTTAAAAGATTGTTTAGGTGATATTTTATAGGTAAAAGAGCTAGACTTGATGTTTAGCTACATTTTAAATTTCTTTTCGATGAAACACATTGATAGCATTTTTTTTTTTTCAGAACATTTTATAGGATAAGTTTTTTGGTTTTAAAAATGGAATTCCCGTAAGCATTCCAAAACTCGATACTTTATTAGGCTTGAGGCTTTCCTGGAGACAAGATTCTAACTTTTAGCCTCTAGACTTATGTCTTCTTTGGACCGTAAGGGTTCCTAATCACACTATAGTTTTGGACGGAGTGAATTTGGAGTGTCCATTGACTATTGAGCAAGAGAAGTTCAATTTTATTTTAGCCAAGAGCTGAAGTTGATTAAATCTAACTAAATGAGTTTTGATTGATGAGGATAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCGTAAGTTGTTCTGTCCTCTCCTGCTAGCTTTTGGTTGCTTTATTTCATTTAACAACAATCTTTTTGTTCAATGTCTGATATAGATCTTTGTTCTCGGTGCAGAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGTTAGTCTTTGCATAAAATATTTTAAACTTTGATTCATAACAGAATAATCATATGAACAATGAATTTGATGAAGTGTATCTACTTTGATTCATTTGGATTATGTATATTTTAATGACGATACCAACTATTTGGTAATGCTATTGATGCTCGTGTCGAAGATCAACTACATATCTTATACTTGTTAGTGAGTACCACTCATGATTGTTTGTCGTTCCATTTAGAGGCACTTAAGCATGTTTACTTCCTAACAACAGATAATTTTTTTATTCGGCAATACTGATATTCGGAGTAGCCTCTGATGGTTTGTTACCTTTTCCCGTTTCTGTGTTTGTTTCAGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGTAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTTCTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGATAGGAGCGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTTTTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAAAGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGATATCTTTCCTTTAGCCTTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTACCAGGACTATTAAATATCTTGAGTTTATAAAAATGTTGAAAATATTGA

mRNA sequence

AATCAGCATTTTGCCCACAAAAAAACCCTAATCGGTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGTAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTTCTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGATAGGAGCGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTTTTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAAAGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGATATCTTTCCTTTAGCCTTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTACCAGGACTATTAAATATCTTGAGTTTATAAAAATGTTGAAAATATTGA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAG

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPARV
Homology
[Close]
BLAST of Carg00170 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 1.7e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAGIPARV
Sbjct: 121 AGAGIPARV 129

[Close]
BLAST of Carg00170 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 2.3e-67
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAG+PARV
Sbjct: 121 AGAGVPARV 129

[Close]
BLAST of Carg00170 vs. NCBI nr
Match: XP_004146441.1 (PREDICTED: 40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >KGN50730.1 hypothetical protein Csa_5G220930 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 8.1e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of Carg00170 vs. NCBI nr
Match: XP_008369355.1 (PREDICTED: 40S ribosomal protein S26-1 [Malus domestica] >XP_009363818.1 PREDICTED: 40S ribosomal protein S26-1-like [Pyrus x bretschneideri] >XP_009363863.1 PREDICTED: 40S ribosomal protein S26-1-like [Pyrus x bretschneideri])

HSP 1 Score: 254.2 bits (648), Expect = 2.3e-64
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRT+RRNR+PPQRFIRRRDD P+PGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRNREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 AGAGIPAR 129
           AGAG+PAR
Sbjct: 121 AGAGVPAR 128

[Close]
BLAST of Carg00170 vs. NCBI nr
Match: GAV62493.1 (LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 254.2 bits (648), Expect = 2.3e-64
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 240 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 299

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQRFIRRRDD PKPGQPGQAPRP
Sbjct: 300 QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDIPKPGQPGQAPRP 359

Query: 121 AGAGIPAR 129
           AGAG P R
Sbjct: 360 AGAGNPVR 367

[Close]
BLAST of Carg00170 vs. TAIR10
Match: AT3G56340.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.3e-56
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G PA
Sbjct: 121 AG-GAPA 126

[Close]
BLAST of Carg00170 vs. TAIR10
Match: AT2G40510.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 205.7 bits (522), Expect = 1.7e-53
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQA 117

[Close]
BLAST of Carg00170 vs. TAIR10
Match: AT2G40590.1 (Ribosomal protein S26e family protein)

HSP 1 Score: 205.7 bits (522), Expect = 1.7e-53
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQA 117

[Close]
BLAST of Carg00170 vs. Swiss-Prot
Match: sp|Q9LYK9|RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-55
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G PA
Sbjct: 121 AG-GAPA 126

[Close]
BLAST of Carg00170 vs. Swiss-Prot
Match: sp|P49206|RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-52
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQA 117

[Close]
BLAST of Carg00170 vs. Swiss-Prot
Match: sp|Q8LPJ7|RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-52
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQA 118
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQA 117

[Close]
BLAST of Carg00170 vs. Swiss-Prot
Match: sp|P49216|RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 4.0e-47
Identity = 89/110 (80.91%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPK 111
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRR+D+P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQ 109

[Close]
BLAST of Carg00170 vs. Swiss-Prot
Match: sp|O45499|RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  PRP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

[Close]
BLAST of Carg00170 vs. TrEMBL
Match: tr|A0A1S3C5M1|A0A1S3C5M1_CUCME (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.3e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of Carg00170 vs. TrEMBL
Match: tr|A0A0A0KM45|A0A0A0KM45_CUCSA (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.3e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]
BLAST of Carg00170 vs. TrEMBL
Match: tr|A0A1Q3B3V8|A0A1Q3B3V8_CEPFO (Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06016 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 240 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 299

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQRFIRRRDD PKPGQPGQAPRP
Sbjct: 300 QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDIPKPGQPGQAPRP 359

Query: 121 AGAGIPAR 129
           AGAG P R
Sbjct: 360 AGAGNPVR 367

[Close]
BLAST of Carg00170 vs. TrEMBL
Match: tr|A0A2P4JYI1|A0A2P4JYI1_QUESU (Superoxide dismutase [mn], mitochondrial OS=Quercus suber OX=58331 GN=CFP56_07164 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.7e-64
Identity = 122/128 (95.31%), Postives = 124/128 (96.88%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 297 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 356

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QY LPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R PPQRF+RRRDDQP+PGQPGQAPRP
Sbjct: 357 QYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFLRRRDDQPRPGQPGQAPRP 416

Query: 121 AGAGIPAR 129
           AGAG PAR
Sbjct: 417 AGAGNPAR 424

[Close]
BLAST of Carg00170 vs. TrEMBL
Match: tr|M5XE55|M5XE55_PRUPE (40S ribosomal protein S26 OS=Prunus persica OX=3760 GN=PRUPE_2G262500 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.8e-63
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRT+RRNR+PPQRFIRRRDD P+PGQPGQ PRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRNREPPQRFIRRRDDAPRPGQPGQGPRP 120

Query: 121 AGAGIPAR 129
           AGA +PAR
Sbjct: 121 AGAPVPAR 128

The following BLAST results are available for this feature:
BLAST of Carg00170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943123.11.7e-67100.0040S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso... [more]
XP_023529394.12.3e-6799.2240S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo][more]
XP_004146441.18.1e-6596.90PREDICTED: 40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICT... [more]
XP_008369355.12.3e-6495.31PREDICTED: 40S ribosomal protein S26-1 [Malus domestica] >XP_009363818.1 PREDICT... [more]
GAV62493.12.3e-6496.88LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-co... [more]
BLAST of Carg00170 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56340.11.3e-5685.04Ribosomal protein S26e family protein[more]
AT2G40510.11.7e-5385.47Ribosomal protein S26e family protein[more]
AT2G40590.11.7e-5385.47Ribosomal protein S26e family protein[more]
BLAST of Carg00170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LYK9|RS263_ARATH2.3e-5585.0440S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1[more]
sp|P49206|RS261_ARATH3.1e-5285.4740S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2[more]
sp|Q8LPJ7|RS262_ARATH3.1e-5285.4740S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2[more]
sp|P49216|RS26_ORYSJ4.0e-4780.9140S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2... [more]
sp|O45499|RS26_CAEEL1.3e-3767.5040S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1[more]
BLAST of Carg00170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5M1|A0A1S3C5M1_CUCME5.3e-6596.9040S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1[more]
tr|A0A0A0KM45|A0A0A0KM45_CUCSA5.3e-6596.9040S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1[more]
tr|A0A1Q3B3V8|A0A1Q3B3V8_CEPFO1.6e-6496.88Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_... [more]
tr|A0A2P4JYI1|A0A2P4JYI1_QUESU7.7e-6495.31Superoxide dismutase [mn], mitochondrial OS=Quercus suber OX=58331 GN=CFP56_0716... [more]
tr|M5XE55|M5XE55_PRUPE3.8e-6393.7540S ribosomal protein S26 OS=Prunus persica OX=3760 GN=PRUPE_2G262500 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_S26e
IPR038551Ribosomal_S26e_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00170-RACarg00170-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038551Ribosomal protein S26e superfamilyGENE3DG3DSA:3.30.1740.20coord: 1..107
e-value: 6.3E-53
score: 179.7
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 1..106
e-value: 8.8E-55
score: 183.6
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 1..128
IPR000892Ribosomal protein S26ePROSITEPS00733RIBOSOMAL_S26Ecoord: 73..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..129
NoneNo IPR availablePANTHERPTHR12538:SF640S RIBOSOMAL PROTEIN S26-1-RELATEDcoord: 1..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00170Cla007289Watermelon (97103) v1carwmB0667
Carg00170Csa5G220930Cucumber (Chinese Long) v2carcuB0694
Carg00170Csa6G014520Cucumber (Chinese Long) v2carcuB0697
Carg00170MELO3C020141Melon (DHL92) v3.5.1carmeB0656
Carg00170ClCG07G005050Watermelon (Charleston Gray)carwcgB0651
Carg00170ClCG11G005710Watermelon (Charleston Gray)carwcgB0644
Carg00170CSPI05G11480Wild cucumber (PI 183967)carcpiB0706
Carg00170CSPI06G02110Wild cucumber (PI 183967)carcpiB0709
Carg00170Cucsa.143990Cucumber (Gy14) v1carcgyB0745
Carg00170CmaCh15G001620Cucurbita maxima (Rimu)carcmaB0943
Carg00170CmaCh04G028670Cucurbita maxima (Rimu)carcmaB0950
Carg00170CmaCh04G001080Cucurbita maxima (Rimu)carcmaB0949
Carg00170CmoCh04G029960Cucurbita moschata (Rifu)carcmoB0925
Carg00170CmoCh15G001760Cucurbita moschata (Rifu)carcmoB0918
Carg00170Lsi03G002680Bottle gourd (USVL1VR-Ls)carlsiB603
Carg00170Cp4.1LG13g07660Cucurbita pepo (Zucchini)carcpeB0934
Carg00170CsGy6G002180Cucumber (Gy14) v2carcgybB0673
Carg00170MELO3C020141.2Melon (DHL92) v3.6.1carmedB0671
Carg00170CsaV3_5G010880Cucumber (Chinese Long) v3carcucB0708
Carg00170CsaV3_6G002260Cucumber (Chinese Long) v3carcucB0711
Carg00170Cla97C11G212640Watermelon (97103) v2carwmbB0689
Carg00170Cla97C07G133400Watermelon (97103) v2carwmbB0700
Carg00170Bhi04G001838Wax gourdcarwgoB0781
Carg00170Bhi07G000422Wax gourdcarwgoB0785
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00170Carg05943Silver-seed gourdcarcarB025
Carg00170Carg02154Silver-seed gourdcarcarB305
Carg00170Carg24478Silver-seed gourdcarcarB570
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00170Silver-seed gourdcarcarB197
Carg00170Silver-seed gourdcarcarB573
Carg00170Cucumber (Gy14) v2carcgybB0670
Carg00170Cucurbita maxima (Rimu)carcmaB0940
Carg00170Cucurbita maxima (Rimu)carcmaB0948
Carg00170Cucurbita maxima (Rimu)carcmaB0952
Carg00170Cucurbita moschata (Rifu)carcmoB0914
Carg00170Cucurbita moschata (Rifu)carcmoB0923
Carg00170Cucurbita moschata (Rifu)carcmoB0924
Carg00170Cucurbita moschata (Rifu)carcmoB0927
Carg00170Cucurbita pepo (Zucchini)carcpeB0938
Carg00170Cucurbita pepo (Zucchini)carcpeB0939
Carg00170Cucurbita pepo (Zucchini)carcpeB0944
Carg00170Cucurbita pepo (Zucchini)carcpeB0952
Carg00170Bottle gourd (USVL1VR-Ls)carlsiB605