CsaV3_5G003100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G003100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 1951210 .. 1951452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCATCATCTCAACCTCCATCTTTCAGTCTTCATCATTGGACTACTTATCATCGTTGGTCACGTCTCGGCAGTCACTACTTCTGATCAGAACAAGAACTTTTTTTATCGTCGTTTTGAAGAAATGATATTTAACATGAAGAAGGTGGGTGGTGGCACCGGCGGCAACAACAATGCCAACGTGTTCGGAGGCTCTCTACATCTTGTTCCGAATGGTCCAGACGCTCTTCATCATTGA

mRNA sequence

ATGGCGGCTCATCATCTCAACCTCCATCTTTCAGTCTTCATCATTGGACTACTTATCATCGTTGGTCACGTCTCGGCAGTCACTACTTCTGATCAGAACAAGAACTTTTTTTATCGTCGTTTTGAAGAAATGATATTTAACATGAAGAAGGTGGGTGGTGGCACCGGCGGCAACAACAATGCCAACGTGTTCGGAGGCTCTCTACATCTTGTTCCGAATGGTCCAGACGCTCTTCATCATTGA

Coding sequence (CDS)

ATGGCGGCTCATCATCTCAACCTCCATCTTTCAGTCTTCATCATTGGACTACTTATCATCGTTGGTCACGTCTCGGCAGTCACTACTTCTGATCAGAACAAGAACTTTTTTTATCGTCGTTTTGAAGAAATGATATTTAACATGAAGAAGGTGGGTGGTGGCACCGGCGGCAACAACAATGCCAACGTGTTCGGAGGCTCTCTACATCTTGTTCCGAATGGTCCAGACGCTCTTCATCATTGA

Protein sequence

MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNFFYRRFEEMIFNMKKVGGGTGGNNNANVFGGSLHLVPNGPDALHH
Homology
[Close]
BLAST of CsaV3_5G003100 vs. NCBI nr
Match: KGN50130.1 (hypothetical protein Csa_5G155410 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 ANVFGGSLHLVPNGPDALHH 81
          ANVFGGSLHLVPNGPDALHH
Sbjct: 61 ANVFGGSLHLVPNGPDALHH 80

[Close]
BLAST of CsaV3_5G003100 vs. NCBI nr
Match: KGN50131.1 (hypothetical protein Csa_5G155420 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-15
Identity = 48/80 (60.00%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAAH LNLHLSVFIIGLLI+VGHVSAVTTSDQNK+                         
Sbjct: 1  MAAHRLNLHLSVFIIGLLIVVGHVSAVTTSDQNKSIFYRRFGGMMFNKKVSGGDGGGHND 60

Query: 61 ANVFGGSLHLVPNGPDALHH 81
          ANVFGGSLHLVPN P+ LH+
Sbjct: 61 ANVFGGSLHLVPNSPNPLHN 80

[Close]
BLAST of CsaV3_5G003100 vs. TrEMBL
Match: tr|A0A0A0KKB3|A0A0A0KKB3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G155410 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-20
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 ANVFGGSLHLVPNGPDALHH 81
          ANVFGGSLHLVPNGPDALHH
Sbjct: 61 ANVFGGSLHLVPNGPDALHH 80

[Close]
BLAST of CsaV3_5G003100 vs. TrEMBL
Match: tr|A0A0A0KQY0|A0A0A0KQY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G155420 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 48/80 (60.00%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAAH LNLHLSVFIIGLLI+VGHVSAVTTSDQNK+                         
Sbjct: 1  MAAHRLNLHLSVFIIGLLIVVGHVSAVTTSDQNKSIFYRRFGGMMFNKKVSGGDGGGHND 60

Query: 61 ANVFGGSLHLVPNGPDALHH 81
          ANVFGGSLHLVPN P+ LH+
Sbjct: 61 ANVFGGSLHLVPNSPNPLHN 80

The following BLAST results are available for this feature:
BLAST of CsaV3_5G003100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50130.11.4e-19100.00hypothetical protein Csa_5G155410 [Cucumis sativus][more]
KGN50131.12.8e-1560.00hypothetical protein Csa_5G155420 [Cucumis sativus][more]
BLAST of CsaV3_5G003100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKB3|A0A0A0KKB3_CUCSA9.6e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G155410 PE=4 SV=1[more]
tr|A0A0A0KQY0|A0A0A0KQY0_CUCSA1.9e-1560.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G155420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G003100.1CsaV3_5G003100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G003100CSPI05G05720Wild cucumber (PI 183967)cpicucB285
CsaV3_5G003100MELO3C005644Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G003100ClCG01G002990Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G003100MELO3C005644.2Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G003100Bhi12G000215Wax gourdcucwgoB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G003100Cucurbita pepo (Zucchini)cpecucB0915
CsaV3_5G003100Wild cucumber (PI 183967)cpicucB169
CsaV3_5G003100Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G003100Bottle gourd (USVL1VR-Ls)cuclsiB399
CsaV3_5G003100Melon (DHL92) v3.5.1cucmeB415
CsaV3_5G003100Melon (DHL92) v3.6.1cucmedB407
CsaV3_5G003100Watermelon (Charleston Gray)cucwcgB416
CsaV3_5G003100Watermelon (97103) v1cucwmB433
CsaV3_5G003100Watermelon (97103) v1cucwmB429
CsaV3_5G003100Watermelon (97103) v2cucwmbB351
CsaV3_5G003100Watermelon (97103) v2cucwmbB400
CsaV3_5G003100Wax gourdcucwgoB491
CsaV3_5G003100Cucumber (Chinese Long) v3cuccucB125
CsaV3_5G003100Silver-seed gourdcarcucB0963
CsaV3_5G003100Silver-seed gourdcarcucB0979
CsaV3_5G003100Cucumber (Gy14) v2cgybcucB135
CsaV3_5G003100Cucumber (Gy14) v2cgybcucB232
CsaV3_5G003100Cucumber (Gy14) v1cgycucB470
CsaV3_5G003100Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G003100Cucurbita maxima (Rimu)cmacucB0406
CsaV3_5G003100Cucurbita maxima (Rimu)cmacucB0502
CsaV3_5G003100Cucurbita maxima (Rimu)cmacucB0730
CsaV3_5G003100Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G003100Cucurbita moschata (Rifu)cmocucB0401
CsaV3_5G003100Cucurbita moschata (Rifu)cmocucB0491
CsaV3_5G003100Cucurbita moschata (Rifu)cmocucB0718
CsaV3_5G003100Cucurbita pepo (Zucchini)cpecucB0045
CsaV3_5G003100Cucurbita pepo (Zucchini)cpecucB0209