ClCG01G002990 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G002990
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 3045750 .. 3045935 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCATCGTATCAACTTCTCATCGTCGTCGGCCACTACTTCTGATTACAATAAGAGCATTTTCTATCGGCGTTTTGGAGGAATAATATTTAACGGGAAGAAGATGGGCGGCGGCGACCGCGGTGTTTTTGGAGGTTCTCTACGCCTAGTTCCGGCGGGTCCAAACCCTCTTCATCATTGA

mRNA sequence

ATGGCGGCTCATCGTATCAACTTCTCATCGTCGTCGGCCACTACTTCTGATTACAATAAGAGCATTTTCTATCGGCGTTTTGGAGGAATAATATTTAACGGGAAGAAGATGGGCGGCGGCGACCGCGGTGTTTTTGGAGGTTCTCTACGCCTAGTTCCGGCGGGTCCAAACCCTCTTCATCATTGA

Coding sequence (CDS)

ATGGCGGCTCATCGTATCAACTTCTCATCGTCGTCGGCCACTACTTCTGATTACAATAAGAGCATTTTCTATCGGCGTTTTGGAGGAATAATATTTAACGGGAAGAAGATGGGCGGCGGCGACCGCGGTGTTTTTGGAGGTTCTCTACGCCTAGTTCCGGCGGGTCCAAACCCTCTTCATCATTGA

Protein sequence

MAAHRINFSSSSATTSDYNKSIFYRRFGGIIFNGKKMGGGDRGVFGGSLRLVPAGPNPLHH
Homology
[Close]
BLAST of ClCG01G002990 vs. TrEMBL
Match: A0A0A0KQY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155420 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 1  MAAHRINFSSS--------------SATTSDYNKSIFYRRFGGIIFNGKKMGGGDRG--- 60
          MAAHR+N   S              + TTSD NKSIFYRRFGG++FN KK+ GGD G   
Sbjct: 1  MAAHRLNLHLSVFIIGLLIVVGHVSAVTTSDQNKSIFYRRFGGMMFN-KKVSGGDGGGHN 60

Query: 61 ---VFGGSLRLVPAGPNPLHH 62
             VFGGSL LVP  PNPLH+
Sbjct: 61 DANVFGGSLHLVPNSPNPLHN 80

[Close]
BLAST of ClCG01G002990 vs. TrEMBL
Match: A0A0A0KKB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155410 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-09
Identity = 40/80 (50.00%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1  MAAHRINFSSS--------------SATTSDYNKSIFYRRFGGIIFNGKKMGGGDRG--- 60
          MAAH +N   S              + TTSD NK+ FYRRF  +IFN KK+GGG  G   
Sbjct: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNFFYRRFEEMIFNMKKVGGGTGGNNN 60

Query: 61 --VFGGSLRLVPAGPNPLHH 62
            VFGGSL LVP GP+ LHH
Sbjct: 61 ANVFGGSLHLVPNGPDALHH 80

[Close]
BLAST of ClCG01G002990 vs. NCBI nr
Match: gi|700194954|gb|KGN50131.1| (hypothetical protein Csa_5G155420 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 1  MAAHRINFSSS--------------SATTSDYNKSIFYRRFGGIIFNGKKMGGGDRG--- 60
          MAAHR+N   S              + TTSD NKSIFYRRFGG++FN KK+ GGD G   
Sbjct: 1  MAAHRLNLHLSVFIIGLLIVVGHVSAVTTSDQNKSIFYRRFGGMMFN-KKVSGGDGGGHN 60

Query: 61 ---VFGGSLRLVPAGPNPLHH 62
             VFGGSL LVP  PNPLH+
Sbjct: 61 DANVFGGSLHLVPNSPNPLHN 80

[Close]
BLAST of ClCG01G002990 vs. NCBI nr
Match: gi|700194953|gb|KGN50130.1| (hypothetical protein Csa_5G155410 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 40/80 (50.00%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1  MAAHRINFSSS--------------SATTSDYNKSIFYRRFGGIIFNGKKMGGGDRG--- 60
          MAAH +N   S              + TTSD NK+ FYRRF  +IFN KK+GGG  G   
Sbjct: 1  MAAHHLNLHLSVFIIGLLIIVGHVSAVTTSDQNKNFFYRRFEEMIFNMKKVGGGTGGNNN 60

Query: 61 --VFGGSLRLVPAGPNPLHH 62
            VFGGSL LVP GP+ LHH
Sbjct: 61 ANVFGGSLHLVPNGPDALHH 80

The following BLAST results are available for this feature:
BLAST of ClCG01G002990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQY0_CUCSA2.5e-1154.32Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155420 PE=4 SV=1[more]
A0A0A0KKB3_CUCSA1.8e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155410 PE=4 SV=1[more]
BLAST of ClCG01G002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194954|gb|KGN50131.1|3.6e-1154.32hypothetical protein Csa_5G155420 [Cucumis sativus][more]
gi|700194953|gb|KGN50130.1|2.6e-0950.00hypothetical protein Csa_5G155410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G002990.1ClCG01G002990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G002990Csa5G155420Cucumber (Chinese Long) v2cuwcgB364
ClCG01G002990MELO3C005644Melon (DHL92) v3.5.1mewcgB018
ClCG01G002990Bhi12G000215Wax gourdwcgwgoB198
ClCG01G002990CSPI05G05720Wild cucumber (PI 183967)cpiwcgB379
ClCG01G002990MELO3C005644.2Melon (DHL92) v3.6.1medwcgB016
ClCG01G002990CsaV3_5G003100Cucumber (Chinese Long) v3cucwcgB385
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G002990Silver-seed gourdcarwcgB0898
ClCG01G002990Silver-seed gourdcarwcgB0912
ClCG01G002990Cucumber (Chinese Long) v3cucwcgB212
ClCG01G002990Watermelon (97103) v2wcgwmbB089
ClCG01G002990Watermelon (97103) v2wcgwmbB109
ClCG01G002990Wax gourdwcgwgoB207
ClCG01G002990Watermelon (Charleston Gray)wcgwcgB101
ClCG01G002990Cucurbita moschata (Rifu)cmowcgB247
ClCG01G002990Cucumber (Gy14) v1cgywcgB520
ClCG01G002990Cucurbita maxima (Rimu)cmawcgB259
ClCG01G002990Cucurbita maxima (Rimu)cmawcgB292
ClCG01G002990Cucurbita maxima (Rimu)cmawcgB352
ClCG01G002990Cucurbita maxima (Rimu)cmawcgB518
ClCG01G002990Cucurbita moschata (Rifu)cmowcgB285
ClCG01G002990Cucurbita moschata (Rifu)cmowcgB348
ClCG01G002990Cucurbita moschata (Rifu)cmowcgB516
ClCG01G002990Wild cucumber (PI 183967)cpiwcgB210
ClCG01G002990Cucumber (Chinese Long) v2cuwcgB208
ClCG01G002990Melon (DHL92) v3.5.1mewcgB422
ClCG01G002990Watermelon (97103) v1wcgwmB137
ClCG01G002990Watermelon (97103) v1wcgwmB142
ClCG01G002990Cucurbita pepo (Zucchini)cpewcgB008
ClCG01G002990Cucurbita pepo (Zucchini)cpewcgB023
ClCG01G002990Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G002990Cucurbita pepo (Zucchini)cpewcgB202
ClCG01G002990Cucurbita pepo (Zucchini)cpewcgB639
ClCG01G002990Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G002990Bottle gourd (USVL1VR-Ls)lsiwcgB322
ClCG01G002990Cucumber (Gy14) v2cgybwcgB191
ClCG01G002990Cucumber (Gy14) v2cgybwcgB332
ClCG01G002990Melon (DHL92) v3.6.1medwcgB408