CsaV3_4G036870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G036870
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 25921246 .. 25921513 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCCGCGGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGGTTCGCATTCATTTCAGCCGGCGGCTGTCAGATTATTGATCAAGGGGAATTCCCCCTCTTTCGTGGTCCCCAGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

mRNA sequence

ATGGGTCCCGCGGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

Coding sequence (CDS)

ATGGGTCCCGCGGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

Protein sequence

MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAEREPT
Homology
[Close]
BLAST of CsaV3_4G036870 vs. NCBI nr
Match: KGN55460.1 (hypothetical protein Csa_4G652720 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 8.0e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE 60
          MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE
Sbjct: 1  MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE 60

Query: 61 REPT 65
          REPT
Sbjct: 61 REPT 64

[Close]
BLAST of CsaV3_4G036870 vs. TrEMBL
Match: tr|A0A0A0L0H7|A0A0A0L0H7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652720 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE 60
          MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE
Sbjct: 1  MGPAEAERPIVRTTPRFSFLHVFPSHSLIPSVLPPRSPLLWSKRLPLDACRPVLVPRVAE 60

Query: 61 REPT 65
          REPT
Sbjct: 61 REPT 64

The following BLAST results are available for this feature:
BLAST of CsaV3_4G036870 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55460.18.0e-29100.00hypothetical protein Csa_4G652720 [Cucumis sativus][more]
BLAST of CsaV3_4G036870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G036870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G036870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0H7|A0A0A0L0H7_CUCSA5.3e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652720 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G036870.1CsaV3_4G036870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G036870CSPI04G26510Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G036870Cucumber (Chinese Long) v3cuccucB082
CsaV3_4G036870Cucumber (Chinese Long) v3cuccucB186
CsaV3_4G036870Silver-seed gourdcarcucB0164
CsaV3_4G036870Silver-seed gourdcarcucB0667
CsaV3_4G036870Silver-seed gourdcarcucB0702
CsaV3_4G036870Silver-seed gourdcarcucB1023
CsaV3_4G036870Cucumber (Gy14) v2cgybcucB035
CsaV3_4G036870Cucumber (Gy14) v2cgybcucB082
CsaV3_4G036870Cucumber (Gy14) v2cgybcucB171
CsaV3_4G036870Cucumber (Gy14) v2cgybcucB337
CsaV3_4G036870Cucumber (Gy14) v1cgycucB130
CsaV3_4G036870Cucumber (Gy14) v1cgycucB255
CsaV3_4G036870Cucumber (Gy14) v1cgycucB415
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0088
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0027
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0152
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0216
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0559
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB0944
CsaV3_4G036870Cucurbita maxima (Rimu)cmacucB1063
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0015
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0077
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0138
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0202
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0545
CsaV3_4G036870Cucurbita moschata (Rifu)cmocucB0932
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB0126
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB0460
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB0713
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB0849
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB0969
CsaV3_4G036870Cucurbita pepo (Zucchini)cpecucB1026
CsaV3_4G036870Wild cucumber (PI 183967)cpicucB104
CsaV3_4G036870Wild cucumber (PI 183967)cpicucB403
CsaV3_4G036870Bottle gourd (USVL1VR-Ls)cuclsiB288
CsaV3_4G036870Bottle gourd (USVL1VR-Ls)cuclsiB306
CsaV3_4G036870Bottle gourd (USVL1VR-Ls)cuclsiB338
CsaV3_4G036870Melon (DHL92) v3.5.1cucmeB277
CsaV3_4G036870Melon (DHL92) v3.5.1cucmeB288
CsaV3_4G036870Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G036870Melon (DHL92) v3.6.1cucmedB270
CsaV3_4G036870Melon (DHL92) v3.6.1cucmedB281
CsaV3_4G036870Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G036870Watermelon (Charleston Gray)cucwcgB325
CsaV3_4G036870Watermelon (Charleston Gray)cucwcgB352
CsaV3_4G036870Watermelon (97103) v1cucwmB312
CsaV3_4G036870Watermelon (97103) v1cucwmB333
CsaV3_4G036870Watermelon (97103) v2cucwmbB313
CsaV3_4G036870Watermelon (97103) v2cucwmbB338
CsaV3_4G036870Wax gourdcucwgoB392
CsaV3_4G036870Wax gourdcucwgoB426
CsaV3_4G036870Wax gourdcucwgoB434