CsaV3_4G033820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 23959752 .. 23960096 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGATTATGATTGCTTTGACAAATGACTTTCCTTTCTTCTTGGTTTCCATTTTCTCACGACTCCGCAGATTGGGAACCAGTAAAATATAAAAGAAACCTTTTTTGTGATTTGGGCATGTGAAAAAGATTAAATAGGGAAGAGAAGAGGAAACTGTTCAACATGATTGTGTTTCCAATAATTAAGGGGAAAATGAATGCGATGTGGATGTGGATGTGATGGATTTGAGGGCCAACAATTGTTGCTTCCCCGTTGCTGCAATCATAAATTTGATGTTGCCACTGTGCTTCATCCCCATGCCTCACTCCGCGTTCCGCGTTTCCCCTCTAAACGACGTTTAA

mRNA sequence

ATGAATGTGATTATGATTGCTTTGACAAATGACTTTCCTTTCTTCTTGGTTTCCATTTTCTCACGACTCCGCAGATTGGGAACCAGGGAAAATGAATGCGATGTGGATGTGGATGTGATGGATTTGAGGGCCAACAATTGTTGCTTCCCCGTTGCTGCAATCATAAATTTGATGTTGCCACTGTGCTTCATCCCCATGCCTCACTCCGCGTTCCGCGTTTCCCCTCTAAACGACGTTTAA

Coding sequence (CDS)

ATGAATGTGATTATGATTGCTTTGACAAATGACTTTCCTTTCTTCTTGGTTTCCATTTTCTCACGACTCCGCAGATTGGGAACCAGGGAAAATGAATGCGATGTGGATGTGGATGTGATGGATTTGAGGGCCAACAATTGTTGCTTCCCCGTTGCTGCAATCATAAATTTGATGTTGCCACTGTGCTTCATCCCCATGCCTCACTCCGCGTTCCGCGTTTCCCCTCTAAACGACGTTTAA

Protein sequence

MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLPLCFIPMPHSAFRVSPLNDV
Homology
[Close]
BLAST of CsaV3_4G033820 vs. NCBI nr
Match: KGN55140.1 (hypothetical protein Csa_4G637800 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP 60
          MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP
Sbjct: 1  MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP 60

Query: 61 LCFIPMPHSAFRVSPLNDV 80
          LCFIPMPHSAFRVSPLNDV
Sbjct: 61 LCFIPMPHSAFRVSPLNDV 79

[Close]
BLAST of CsaV3_4G033820 vs. TrEMBL
Match: tr|A0A0A0KZN4|A0A0A0KZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637800 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP 60
          MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP
Sbjct: 1  MNVIMIALTNDFPFFLVSIFSRLRRLGTRENECDVDVDVMDLRANNCCFPVAAIINLMLP 60

Query: 61 LCFIPMPHSAFRVSPLNDV 80
          LCFIPMPHSAFRVSPLNDV
Sbjct: 61 LCFIPMPHSAFRVSPLNDV 79

The following BLAST results are available for this feature:
BLAST of CsaV3_4G033820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55140.12.0e-37100.00hypothetical protein Csa_4G637800 [Cucumis sativus][more]
BLAST of CsaV3_4G033820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZN4|A0A0A0KZN4_CUCSA1.3e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033820.1CsaV3_4G033820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G033820CsGy4G021930Cucumber (Gy14) v2cgybcucB171
CsaV3_4G033820ClCG11G018170Watermelon (Charleston Gray)cucwcgB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G033820Cucumber (Chinese Long) v3cuccucB030
CsaV3_4G033820Cucumber (Chinese Long) v3cuccucB081
CsaV3_4G033820Cucumber (Chinese Long) v3cuccucB183
CsaV3_4G033820Silver-seed gourdcarcucB0172
CsaV3_4G033820Silver-seed gourdcarcucB0194
CsaV3_4G033820Silver-seed gourdcarcucB0344
CsaV3_4G033820Cucumber (Gy14) v2cgybcucB034
CsaV3_4G033820Cucumber (Gy14) v2cgybcucB081
CsaV3_4G033820Cucumber (Gy14) v1cgycucB027
CsaV3_4G033820Cucumber (Gy14) v1cgycucB167
CsaV3_4G033820Cucumber (Gy14) v1cgycucB349
CsaV3_4G033820Cucurbita maxima (Rimu)cmacucB0028
CsaV3_4G033820Cucurbita maxima (Rimu)cmacucB0258
CsaV3_4G033820Cucurbita maxima (Rimu)cmacucB0494
CsaV3_4G033820Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G033820Cucurbita maxima (Rimu)cmacucB0945
CsaV3_4G033820Cucurbita moschata (Rifu)cmocucB0016
CsaV3_4G033820Cucurbita moschata (Rifu)cmocucB0246
CsaV3_4G033820Cucurbita moschata (Rifu)cmocucB0483
CsaV3_4G033820Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G033820Cucurbita moschata (Rifu)cmocucB0933
CsaV3_4G033820Cucurbita pepo (Zucchini)cpecucB0042
CsaV3_4G033820Cucurbita pepo (Zucchini)cpecucB0647
CsaV3_4G033820Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G033820Cucurbita pepo (Zucchini)cpecucB0970
CsaV3_4G033820Wild cucumber (PI 183967)cpicucB039
CsaV3_4G033820Wild cucumber (PI 183967)cpicucB103
CsaV3_4G033820Wild cucumber (PI 183967)cpicucB212
CsaV3_4G033820Wild cucumber (PI 183967)cpicucB354
CsaV3_4G033820Bottle gourd (USVL1VR-Ls)cuclsiB291
CsaV3_4G033820Bottle gourd (USVL1VR-Ls)cuclsiB314
CsaV3_4G033820Bottle gourd (USVL1VR-Ls)cuclsiB336
CsaV3_4G033820Melon (DHL92) v3.5.1cucmeB275
CsaV3_4G033820Melon (DHL92) v3.5.1cucmeB287
CsaV3_4G033820Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G033820Melon (DHL92) v3.5.1cucmeB333
CsaV3_4G033820Melon (DHL92) v3.6.1cucmedB268
CsaV3_4G033820Melon (DHL92) v3.6.1cucmedB280
CsaV3_4G033820Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G033820Melon (DHL92) v3.6.1cucmedB326
CsaV3_4G033820Watermelon (Charleston Gray)cucwcgB302
CsaV3_4G033820Watermelon (Charleston Gray)cucwcgB350
CsaV3_4G033820Watermelon (97103) v1cucwmB310
CsaV3_4G033820Watermelon (97103) v1cucwmB346
CsaV3_4G033820Watermelon (97103) v1cucwmB367
CsaV3_4G033820Watermelon (97103) v2cucwmbB272
CsaV3_4G033820Watermelon (97103) v2cucwmbB281
CsaV3_4G033820Wax gourdcucwgoB408
CsaV3_4G033820Wax gourdcucwgoB426