CsaV3_4G031520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 21982217 .. 21983026 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGTCACTTCCTTCTCTCTTTTTTCCTTCCATTCTTCATCCCATTACTTCTCTTTTTCTCACTTTTCTGTGTTTCCCTTTTTCACTCAGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGTCCTTAGATCTCATTTCCTTCTTTTGCCTTCCTTTTTCTTTCCCAGCTTTATTCCCTCTTTTTCTTTTTCTTTTTCTTTGTCTTTATCTTTTACTGCTCTCTAGATTTGGTTTTCCAACTTCCTGTAGTTTTTTTTTTTTTTTTTTGTTTCTAATGAGCTTCGACTTCGCTTTCGAACTATGGATGCTTTCTTCTTTTAACCTTTTTTAACTTCCGCTTCATGAATCTTGCGTTTCTGTTATGCAATGTGAGATGATTATTTGTTAAAATATTTGGAAATCTCTTTTTCTCTTTAATTCTGTTTTGTTTTTTAGTTCTTGTCGGTGTAGCGAGAGACCAGGTTTGGGAGTTGTTAGATCCTTGTAATTATGTTTTTCAATTGGTTTGAGGATACAGAGTGTGGGATTCCTTCTATAGTTGCTGTAATATTCTGAATTTCTTTGTACCTTTTGGATTCATTTGAAGAGGATGGTGATTGAATGTTTGATTGCTGTAATCCTTGATTGAAGTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA

mRNA sequence

ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGATACAGAGTGTGGGATTCCTTCTATAGTTGCTTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA

Coding sequence (CDS)

ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGATACAGAGTGTGGGATTCCTTCTATAGTTGCTTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA

Protein sequence

MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAATVSDFEILMDLVHYDERLLIY
Homology
[Close]
BLAST of CsaV3_4G031520 vs. NCBI nr
Match: KGN54891.1 (hypothetical protein Csa_4G572850 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60
          MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA
Sbjct: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60

Query: 61 TVSDFEILMDLVHYDERLLIY 82
          TVSDFEILMDLVHYDERLLIY
Sbjct: 61 TVSDFEILMDLVHYDERLLIY 81

[Close]
BLAST of CsaV3_4G031520 vs. TrEMBL
Match: tr|A0A0A0L432|A0A0A0L432_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572850 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60
          MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA
Sbjct: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60

Query: 61 TVSDFEILMDLVHYDERLLIY 82
          TVSDFEILMDLVHYDERLLIY
Sbjct: 61 TVSDFEILMDLVHYDERLLIY 81

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54891.11.7e-36100.00hypothetical protein Csa_4G572850 [Cucumis sativus][more]
BLAST of CsaV3_4G031520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L432|A0A0A0L432_CUCSA1.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572850 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031520.1CsaV3_4G031520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G031520CSPI04G21150Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031520Watermelon (97103) v2cucwmbB308
CsaV3_4G031520Wax gourdcucwgoB402
CsaV3_4G031520Wax gourdcucwgoB413
CsaV3_4G031520Silver-seed gourdcarcucB0314
CsaV3_4G031520Cucumber (Gy14) v2cgybcucB171
CsaV3_4G031520Cucurbita maxima (Rimu)cmacucB0799
CsaV3_4G031520Cucurbita maxima (Rimu)cmacucB1018
CsaV3_4G031520Cucurbita moschata (Rifu)cmocucB0782
CsaV3_4G031520Cucurbita moschata (Rifu)cmocucB1001
CsaV3_4G031520Cucurbita pepo (Zucchini)cpecucB0076
CsaV3_4G031520Cucurbita pepo (Zucchini)cpecucB0613
CsaV3_4G031520Bottle gourd (USVL1VR-Ls)cuclsiB279
CsaV3_4G031520Melon (DHL92) v3.5.1cucmeB343
CsaV3_4G031520Melon (DHL92) v3.6.1cucmedB337
CsaV3_4G031520Watermelon (Charleston Gray)cucwcgB319
CsaV3_4G031520Watermelon (97103) v1cucwmB348