CSPI04G21150 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21150
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 19580617 .. 19581434 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGTCACTTCCTTTTCTCTTTTTTCCTTCCATTCTTCATCCCATTACTTCTCTTTTTCTCACTTTTCTGTGTTTCCCTTTTTCACTCAGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGTCCTTAGATCTCATTTCCTTCTTTTGCTTTCCTTTTTCTTTCCCAGCTTTATTCCCTCTTTTTCTTTTTCTTTTTCTTTGTCTTTATCTTTTACTGCTCTCTAGATTTGGTTTTCCAACTTCCTGCAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTCTAATGAGCTTCGACTTCGCTTTCGAACTATGGATGCTTTCTTCTTTTAACCTTTTTTAACTTCCGTTTCATGAATCTTGCGTTTCTGTTATGCAATGTGAGATGATTATTTGTTAAAATATTTGGAAATCTCTTTTTCTCTTTATTTCTGTTTTGTTTTTTAGTTCTTGTCGGTGTAGCAAGAGACCAGGTTTGGGAGTTGTTAGATCCTTGTAATTATGTTTTTCAATTAGCTTGAGGATACAGAGTATGGGATTCCTTCTATAGTTGCTGTAATATTCTGAATTTCTTTGTACCTTTTGGATTCATTTGAAGAGGATGGTGATTGAATGTTTGATTGCTGTAATCCTTGATTGAAGTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA

mRNA sequence

ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGATACAGAGTATGGGATTCCTTCTATAGTTGCTTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA

Coding sequence (CDS)

ATGTTTCCCCCTTCTCTCTTCTTCCTTCTTCCATTCTCGGAATCCCCGTTTCTTCCTCCTCCTGATTCTCTGGACATTGCAACGGAATTCAGATGCTCTACTCCTCCTGCTGCTGCGTCCCACTCTGTTTTTGTTTTGGATACAGAGTATGGGATTCCTTCTATAGTTGCTTTGGCGGCTACTGTTTCTGACTTTGAGATTTTGATGGATTTAGTACATTACGATGAGCGACTGCTCATCTATTGA
Homology
[Close]
BLAST of CSPI04G21150 vs. TrEMBL
Match: A0A0A0L432_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572850 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTEYGIPSIVALAA 60
          MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTE GIPSIVALAA
Sbjct: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60

Query: 61 TVSDFEILMDLVHYDERLLIY 82
          TVSDFEILMDLVHYDERLLIY
Sbjct: 61 TVSDFEILMDLVHYDERLLIY 81

[Close]
BLAST of CSPI04G21150 vs. NCBI nr
Match: gi|700199733|gb|KGN54891.1| (hypothetical protein Csa_4G572850 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTEYGIPSIVALAA 60
          MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTE GIPSIVALAA
Sbjct: 1  MFPPSLFFLLPFSESPFLPPPDSLDIATEFRCSTPPAAASHSVFVLDTECGIPSIVALAA 60

Query: 61 TVSDFEILMDLVHYDERLLIY 82
          TVSDFEILMDLVHYDERLLIY
Sbjct: 61 TVSDFEILMDLVHYDERLLIY 81

The following BLAST results are available for this feature:
BLAST of CSPI04G21150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L432_CUCSA1.2e-3598.77Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572850 PE=4 SV=1[more]
BLAST of CSPI04G21150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199733|gb|KGN54891.1|1.7e-3598.77hypothetical protein Csa_4G572850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21150.1CSPI04G21150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G21150Csa4G572850Cucumber (Chinese Long) v2cpicuB181
CSPI04G21150CsaV3_4G031520Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G21150Cucumber (Gy14) v2cgybcpiB169
CSPI04G21150Silver-seed gourdcarcpiB0315
CSPI04G21150Watermelon (97103) v2cpiwmbB308
CSPI04G21150Wax gourdcpiwgoB411
CSPI04G21150Cucurbita maxima (Rimu)cmacpiB679
CSPI04G21150Cucurbita maxima (Rimu)cmacpiB878
CSPI04G21150Cucurbita moschata (Rifu)cmocpiB670
CSPI04G21150Cucurbita moschata (Rifu)cmocpiB858
CSPI04G21150Melon (DHL92) v3.5.1cpimeB341
CSPI04G21150Watermelon (Charleston Gray)cpiwcgB319
CSPI04G21150Watermelon (97103) v1cpiwmB338
CSPI04G21150Cucurbita pepo (Zucchini)cpecpiB066
CSPI04G21150Cucurbita pepo (Zucchini)cpecpiB500
CSPI04G21150Bottle gourd (USVL1VR-Ls)cpilsiB258