CsaV3_4G031410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 21856942 .. 21858168 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCACTATCAATAAAATGAAAACATTGTTTTCGATCTAAATCAAATACATATTCAATAAAAACAAACAAAACATATTCAAAAAAACAAAAACCACATTTTTATTATGTATGCAGCAATGATCTACCTTGAGATATTTTTTCATAAAAAAACTACGAAAACGATAGAGAAGGAGAGAAAGTCGAATAATAAATTAAAGGAATTTAGATTTTTATTTATTTTTGTCGTCATATGAGTAATCAGTGGCGTATCCAGAATGCAGGAGGACACAATTAACAAAAAGAAAAAAAACAATAGTAGCAGATGAATTCACTTTGAAATTTTAGAGAGGGACACAACCACTATACCAAAGACATAATATAGTATAAAATGCATTATTTAAAATATATTGTAATTTGACACTTCAAAACTAATATTAAAATATAAAAATCGAAAATGTGAGGGGAATACGTGCTTCCATCTTTTAATAGATCTACCCATGTAAGCAATATTAAAAAAAGAGAGAGAGATAGTGAAATAGACTATAATATGTTGGCATATTGGGCATGATACCATCATCAATTTTGTACTAAAAAAACGAAAAAAAAAAAAAGAAAAAAGAAAAGAATTCAATCAATTTATGAAGTGATCAGCAATAGGAAAATTAACAATAAAGTTTGATTTGATTTGATTTCAGGTAAGAAAAGAAATGGCACATCAAAGAAGATGAAACATAGTGTGTAAGAATCACATTACATTATATTTATAAGTATATATAAAATAATAATAAGAATGATAAAATAACCTCAATAAAATCCAAAATTCAATAGATGCTTGTAAGAAACAGATTCCGGTGACTGGCTGTAGGAGGGAGACCGGAAAGTTCACAGTTCATCAATAAATTGGAATCTAAAATGAATGTGTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCTGGGACTGGCAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGAAAAGAGAAAGGTTGAGAGAGATTGATGGGGGATTTGAGAGGGTGAGAGTGGGGAGATTATATAAGAGGAGGGAGCGGGGCGTGGAGCCCAGAGAGAAGAG

mRNA sequence

ATGTGTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCTGGGACTGGCAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGAAAAGAGAAAGGTTGAGAGAGATTGA

Coding sequence (CDS)

ATGTGTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCTGGGACTGGCAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGAAAAGAGAAAGGTTGAGAGAGATTGA

Protein sequence

MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRSRGSQGGGEAEGKDKGGNQEGIGDEKLGHLKRIGLIWKEKRKVERD
Homology
[Close]
BLAST of CsaV3_4G031410 vs. NCBI nr
Match: KGN54879.1 (hypothetical protein Csa_4G571750 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI 60
          MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI 60

Query: 61 GDEKLGHLKRIGLIWKEKRKVERD 85
          GDEKLGHLKRIGLIWKEKRKVERD
Sbjct: 61 GDEKLGHLKRIGLIWKEKRKVERD 84

[Close]
BLAST of CsaV3_4G031410 vs. TrEMBL
Match: tr|A0A0A0L1E6|A0A0A0L1E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI 60
          MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGI 60

Query: 61 GDEKLGHLKRIGLIWKEKRKVERD 85
          GDEKLGHLKRIGLIWKEKRKVERD
Sbjct: 61 GDEKLGHLKRIGLIWKEKRKVERD 84

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54879.12.6e-19100.00hypothetical protein Csa_4G571750 [Cucumis sativus][more]
BLAST of CsaV3_4G031410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1E6|A0A0A0L1E6_CUCSA1.7e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031410.1CsaV3_4G031410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G031410CSPI04G21000Wild cucumber (PI 183967)cpicucB212
CsaV3_4G031410ClCG04G000640Watermelon (Charleston Gray)cucwcgB319
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031410Silver-seed gourdcarcucB0314
CsaV3_4G031410Cucumber (Gy14) v2cgybcucB171
CsaV3_4G031410Cucumber (Gy14) v1cgycucB543
CsaV3_4G031410Cucurbita maxima (Rimu)cmacucB0799
CsaV3_4G031410Cucurbita maxima (Rimu)cmacucB1018
CsaV3_4G031410Cucurbita moschata (Rifu)cmocucB0782
CsaV3_4G031410Cucurbita moschata (Rifu)cmocucB1001
CsaV3_4G031410Cucurbita pepo (Zucchini)cpecucB0076
CsaV3_4G031410Cucurbita pepo (Zucchini)cpecucB0613
CsaV3_4G031410Bottle gourd (USVL1VR-Ls)cuclsiB279
CsaV3_4G031410Melon (DHL92) v3.5.1cucmeB332
CsaV3_4G031410Melon (DHL92) v3.5.1cucmeB343
CsaV3_4G031410Melon (DHL92) v3.6.1cucmedB327
CsaV3_4G031410Watermelon (97103) v1cucwmB348
CsaV3_4G031410Watermelon (97103) v2cucwmbB308
CsaV3_4G031410Wax gourdcucwgoB402
CsaV3_4G031410Wax gourdcucwgoB413