CSPI04G21000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 19447885 .. 19448376 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGATTTGATTTCAGGTAAGAAAAGAAATGGCACATCAAAGAAGATGAAACATAGTGTGTAAGAATCACATTACATTATATTTATAAGTATATATAAAATAATAATAACAATGATAAAATAACCTCAATAAAATCCAAAATTCAATAGATGCTTGTAAGAAACAGATTCCGGTGACTGGCTGTAGGAGGGAGACCGGAAAGTTCACAGTTCATCAATAAATTGGAATCTAAAATGAATGTCTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCGGAGACTGGGAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGCAAAGAGAAAGGTTGAGAGAGATTGATGGGAGATTTG

mRNA sequence

ATGTCTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCGGAGACTGGGAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGCAAAGAGAAAGGTTGAGAGAGATTGA

Coding sequence (CDS)

ATGTCTGAGAAGGTGAATAAGAGAGAGGAGAAGAGAAGAGGCAACGACGGCGGCGGAGACTGGGAGAGAACAGCCAGATCCAGCGTCAGGCGCCGGAGCAGGAGCAGGGGATCCCAAGGAGGCGGCGAAGCAGAGGGCAAGGATAAAGGAGGCAACCAAGAAGGCATTGGAGATGAGAAGCTTGGCCATTTGAAGAGAATTGGTTTGATTTGGAAAGCAAAGAGAAAGGTTGAGAGAGATTGA
Homology
[Close]
BLAST of CSPI04G21000 vs. TrEMBL
Match: A0A0A0L1E6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571750 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-30
Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MSEKVNKREEKRRGNDGGGDWERTARSSVRRR----SRSRGSQGGGEAEGKDKGGNQEGI 60
          M EKVNKREEKRRGNDGG DW+RTARSSVRRR    SRSRGSQGGGEAEGKDKGGNQEGI
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRSRGSQGGGEAEGKDKGGNQEGI 60

Query: 61 GDEKLGHLKRIGLIWKAKRKVERD 81
          GDEKLGHLKRIGLIWK KRKVERD
Sbjct: 61 GDEKLGHLKRIGLIWKEKRKVERD 84

[Close]
BLAST of CSPI04G21000 vs. NCBI nr
Match: gi|700199721|gb|KGN54879.1| (hypothetical protein Csa_4G571750 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MSEKVNKREEKRRGNDGGGDWERTARSSVRRR----SRSRGSQGGGEAEGKDKGGNQEGI 60
          M EKVNKREEKRRGNDGG DW+RTARSSVRRR    SRSRGSQGGGEAEGKDKGGNQEGI
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRSRGSQGGGEAEGKDKGGNQEGI 60

Query: 61 GDEKLGHLKRIGLIWKAKRKVERD 81
          GDEKLGHLKRIGLIWK KRKVERD
Sbjct: 61 GDEKLGHLKRIGLIWKEKRKVERD 84

The following BLAST results are available for this feature:
BLAST of CSPI04G21000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1E6_CUCSA1.9e-3090.48Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571750 PE=4 SV=1[more]
BLAST of CSPI04G21000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199721|gb|KGN54879.1|2.7e-3090.48hypothetical protein Csa_4G571750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21000.1CSPI04G21000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G21000Csa4G571750Cucumber (Chinese Long) v2cpicuB181
CSPI04G21000CsaV3_4G031410Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G21000Watermelon (97103) v2cpiwmbB308
CSPI04G21000Wax gourdcpiwgoB411
CSPI04G21000Cucumber (Gy14) v1cgycpiB529
CSPI04G21000Cucurbita maxima (Rimu)cmacpiB679
CSPI04G21000Cucurbita maxima (Rimu)cmacpiB878
CSPI04G21000Cucurbita moschata (Rifu)cmocpiB670
CSPI04G21000Cucurbita moschata (Rifu)cmocpiB858
CSPI04G21000Melon (DHL92) v3.5.1cpimeB333
CSPI04G21000Melon (DHL92) v3.5.1cpimeB341
CSPI04G21000Watermelon (Charleston Gray)cpiwcgB319
CSPI04G21000Watermelon (97103) v1cpiwmB338
CSPI04G21000Cucurbita pepo (Zucchini)cpecpiB066
CSPI04G21000Cucurbita pepo (Zucchini)cpecpiB500
CSPI04G21000Bottle gourd (USVL1VR-Ls)cpilsiB258
CSPI04G21000Melon (DHL92) v3.6.1cpimedB319
CSPI04G21000Cucumber (Gy14) v2cgybcpiB169
CSPI04G21000Silver-seed gourdcarcpiB0315