CsaV3_4G031350 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031350
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DIS3-exonuclease-like protein
Location	chr4 : 21745126 .. 21745703 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGTAGTTTCGATTCGATTTGTAACAAGCACTTGAGATTTTTGTTTTGCTTCTACTGCTGGTGCTGTTGTTTGATTTTGGAGATTCGATCTTTGTCTTGATTTTGTGTTTAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFASVFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCLDSLFLFFIFLVIRTSRCNFLCRFMKPIQFCSNPFP

Homology

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KGN54873.1 (hypothetical protein Csa_4G569720 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 3.4e-57
Identity = 126/139 (90.65%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120
           VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

Query: 121 DSLFLFFIFLVIRTSRCNF 140
           DSL      L+  T    F
Sbjct: 121 DSLXXXXXXLIYETDSILF 139

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: OAY40491.1 (hypothetical protein MANES_09G026700 [Manihot esculenta])

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+ FVET+EDLL  TA +++RAYPRFRLAFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 VFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: XP_007028829.2 (PREDICTED: uncharacterized protein LOC18599003 isoform X1 [Theobroma cacao])

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-18
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPP+RSL+LFV+T+ED+L  TA++T+RAYPR RL  SR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVQTVEDILRQTALYTLRAYPRIRLGLSRIFHS 60

Query: 61 VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIIS 95
          +F +  SR +  W+L+  SS+L  E+  + G+ S
Sbjct: 61 IFHL--SRYIECWLLN--SSILMDEIGRMLGMFS 90

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: XP_022766009.1 (uncharacterized protein LOC111310902 isoform X1 [Durio zibethinus])

HSP 1 Score: 100.1 bits (248), Expect = 6.8e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+L  T ++T+RAYPR RL FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFRVS 66
          +F +S
Sbjct: 61 IFHLS 65

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: XP_022766011.1 (uncharacterized protein LOC111310902 isoform X2 [Durio zibethinus])

HSP 1 Score: 100.1 bits (248), Expect = 6.8e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+L  T ++T+RAYPR RL FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFRVS 66
          +F +S
Sbjct: 61 IFHLS 65

[Close]

BLAST of CsaV3_4G031350 vs. TAIR10
Match: AT3G52105.1 (unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFF +AFSA PLTLY+PPIR L++FVET+E++     +++ R +PR R+A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VFRVSYSRNLGS 73
           F  S SR L S
Sbjct: 61 FF--SSSRPLSS 70

[Close]

BLAST of CsaV3_4G031350 vs. TrEMBL
Match: tr|A0A0A0KZF7|A0A0A0KZF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.2e-57
Identity = 126/139 (90.65%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120
           VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

Query: 121 DSLFLFFIFLVIRTSRCNF 140
           DSL      L+  T    F
Sbjct: 121 DSLXXXXXXLIYETDSILF 139

[Close]

BLAST of CsaV3_4G031350 vs. TrEMBL
Match: tr|A0A2C9V7E1|A0A2C9V7E1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+ FVET+EDLL  TA +++RAYPRFRLAFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 VFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of CsaV3_4G031350 vs. TrEMBL
Match: tr|A0A0D2MES3|A0A0D2MES3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230100 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-18
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFF VAFSAVPLTLYVPPIRSLSLFVET+ED+L  T ++T+R YPR RL FSR+F S
Sbjct: 1  MLQLFFTVAFSAVPLTLYVPPIRSLSLFVETIEDMLRQTTLYTLRVYPRIRLGFSRIFHS 60

Query: 61 VFRVS 66
          +FR+S
Sbjct: 61 IFRLS 65

[Close]

BLAST of CsaV3_4G031350 vs. TrEMBL
Match: tr|A0A061EX00|A0A061EX00_THECC (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_024753 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-18
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPP+RSL+LFV+T+ED+L  TA++T+RAYPR RL  SR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVQTVEDILRQTALYTLRAYPRIRLGLSRIFHS 60

Query: 61 VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIIS 95
          +F +  SR +  W+L+  SS L  E+  + G+ S
Sbjct: 61 IFHL--SRYIVCWLLN--SSTLMDEIGRMLGMFS 90

[Close]

BLAST of CsaV3_4G031350 vs. TrEMBL
Match: tr|W9QPR0|W9QPR0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000744 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+EDL   TA++T+RAYPR RLAFSR++ S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETVEDLFRQTAVYTLRAYPRIRLAFSRIYNS 60

Query: 61 VFRVS 66
          + R++
Sbjct: 61 ILRLN 65

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54873.1	3.4e-57	90.65	hypothetical protein Csa_4G569720 [Cucumis sativus]	[more]
OAY40491.1	2.4e-18	78.46	hypothetical protein MANES_09G026700 [Manihot esculenta]	[more]
XP_007028829.2	4.0e-18	59.57	PREDICTED: uncharacterized protein LOC18599003 isoform X1 [Theobroma cacao]	[more]
XP_022766009.1	6.8e-18	75.38	uncharacterized protein LOC111310902 isoform X1 [Durio zibethinus]	[more]
XP_022766011.1	6.8e-18	75.38	uncharacterized protein LOC111310902 isoform X2 [Durio zibethinus]	[more]

BLAST of CsaV3_4G031350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52105.1	1.4e-12	54.17	unknown protein	[more]

BLAST of CsaV3_4G031350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZF7\|A0A0A0KZF7_CUCSA	2.2e-57	90.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
tr\|A0A2C9V7E1\|A0A2C9V7E1_MANES	1.6e-18	78.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
tr\|A0A0D2MES3\|A0A0D2MES3_GOSRA	7.7e-18	75.38	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230100 PE=4 ...	[more]
tr\|A0A061EX00\|A0A061EX00_THECC	7.7e-18	59.57	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Theobroma c...	[more]
tr\|W9QPR0\|W9QPR0_9ROSA	1.0e-17	75.38	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000744 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004527	exonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031350.1	CsaV3_4G031350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	FAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR36616:SF2	SUBFAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031350	CSPI04G20930	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031350	CmaCh03G000950	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031350	CmoCh03G001010	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031350	CmoCh07G013360	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031350	Cp4.1LG19g00880	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031350	Cp4.1LG10g11960	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031350	CsGy4G019630	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031350	Carg12723	Silver-seed gourd	carcucB0314
CsaV3_4G031350	ClCG04G000820	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031350	Cla97C04G069050	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031350	Bhi03G002178	Wax gourd	cucwgoB413

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031350	Cucumber (Gy14) v1	cgycucB543
CsaV3_4G031350	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031350	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031350	Melon (DHL92) v3.5.1	cucmeB332
CsaV3_4G031350	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G031350	Melon (DHL92) v3.5.1	cucmeB343
CsaV3_4G031350	Melon (DHL92) v3.6.1	cucmedB327
CsaV3_4G031350	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G031350	Watermelon (97103) v1	cucwmB348
CsaV3_4G031350	Wax gourd	cucwgoB402