Carg12723 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12723
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DIS3-exonuclease-like protein
Location	Cucurbita_argyrosperma_scaffold_021 : 967639 .. 968165 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGGTAGATTCGTTTCGATTCGATTCGGTTCTTTTTTTAATCTGAGCGACTTACCTGAGGCTTTTTGTTTCGCCGATTGCTGGTGTTGGTGGTGTTTGATTTGGAGATTCGATTGATTCGTGCTGTTGGATTAGGATCTTTAATCTTGAATGTTGAATCTCTCTTCACTCCTGTAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFASIFRVSNSRLNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFSNSLFPLCSRVSK

Homology

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BLAST of Carg12723 vs. NCBI nr
Match: KGN54873.1 (hypothetical protein Csa_4G569720 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 81/123 (65.85%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  IFRVSNSR---------------LNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFS 109
           +FRVS SR               +   F   II DDGFSFRF+SFF DSVSDL +AL+  
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: XP_025014470.1 (uncharacterized protein LOC8278947 isoform X2 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYVPPIRSLNLF+ET+EELLR S ++T++ YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 67
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: XP_025014468.1 (uncharacterized protein LOC8278947 isoform X1 [Ricinus communis] >XP_025014469.1 uncharacterized protein LOC8278947 isoform X1 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYVPPIRSLNLF+ET+EELLR S ++T++ YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 67
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: EEF35635.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYVPPIRSLNLF+ET+EELLR S ++T++ YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 67
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: OAY40491.1 (hypothetical protein MANES_09G026700 [Manihot esculenta])

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLN FVET+E+LLR +A ++LR YPRFR AFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 IFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of Carg12723 vs. TAIR10
Match: AT3G52105.1 (unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFF +AFSA PLTLY+PPIR L +FVET+EE+  +   ++ R++PR R A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 IFRVS 66
           F  S
Sbjct: 61 FFSSS 65

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BLAST of Carg12723 vs. TrEMBL
Match: tr|A0A0A0KZF7|A0A0A0KZF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.8e-31
Identity = 81/123 (65.85%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  IFRVSNSR---------------LNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFS 109
           +FRVS SR               +   F   II DDGFSFRF+SFF DSVSDL +AL+  
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

[Close]

BLAST of Carg12723 vs. TrEMBL
Match: tr|B9SL52|B9SL52_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYVPPIRSLNLF+ET+EELLR S ++T++ YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 67
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Carg12723 vs. TrEMBL
Match: tr|A0A2C9V7E1|A0A2C9V7E1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLN FVET+E+LLR +A ++LR YPRFR AFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 IFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of Carg12723 vs. TrEMBL
Match: tr|A0A0D2MES3|A0A0D2MES3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230100 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFF VAFSAVPLTLYVPPIRSL+LFVET+E++LR +  +TLRVYPR R  FSR+F S
Sbjct: 1  MLQLFFTVAFSAVPLTLYVPPIRSLSLFVETIEDMLRQTTLYTLRVYPRIRLGFSRIFHS 60

Query: 61 IFRVS 66
          IFR+S
Sbjct: 61 IFRLS 65

[Close]

BLAST of Carg12723 vs. TrEMBL
Match: tr|W9QPR0|W9QPR0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000744 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET+E+L R +A +TLR YPR R AFSR++ S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETVEDLFRQTAVYTLRAYPRIRLAFSRIYNS 60

Query: 61 IFRVS 66
          I R++
Sbjct: 61 ILRLN 65

The following BLAST results are available for this feature:

BLAST of Carg12723 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54873.1	1.2e-30	65.85	hypothetical protein Csa_4G569720 [Cucumis sativus]	[more]
XP_025014470.1	2.3e-18	74.24	uncharacterized protein LOC8278947 isoform X2 [Ricinus communis]	[more]
XP_025014468.1	2.3e-18	74.24	uncharacterized protein LOC8278947 isoform X1 [Ricinus communis] >XP_025014469.1...	[more]
EEF35635.1	2.3e-18	74.24	conserved hypothetical protein [Ricinus communis]	[more]
OAY40491.1	3.9e-18	76.92	hypothetical protein MANES_09G026700 [Manihot esculenta]	[more]

BLAST of Carg12723 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52105.1	3.5e-13	55.38	unknown protein	[more]

BLAST of Carg12723 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12723 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZF7\|A0A0A0KZF7_CUCSA	7.8e-31	65.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
tr\|B9SL52\|B9SL52_RICCO	1.5e-18	74.24	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1	[more]
tr\|A0A2C9V7E1\|A0A2C9V7E1_MANES	2.6e-18	76.92	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
tr\|A0A0D2MES3\|A0A0D2MES3_GOSRA	1.7e-17	75.38	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230100 PE=4 ...	[more]
tr\|W9QPR0\|W9QPR0_9ROSA	2.2e-17	75.38	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000744 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12723-RA	Carg12723-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	FAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12723	Csa4G569720	Cucumber (Chinese Long) v2	carcuB0309
Carg12723	ClCG04G000820	Watermelon (Charleston Gray)	carwcgB0276
Carg12723	CSPI04G20930	Wild cucumber (PI 183967)	carcpiB0315
Carg12723	CmaCh03G000950	Cucurbita maxima (Rimu)	carcmaB0397
Carg12723	CmoCh03G001010	Cucurbita moschata (Rifu)	carcmoB0394
Carg12723	CmoCh07G013360	Cucurbita moschata (Rifu)	carcmoB0395
Carg12723	Cp4.1LG10g11960	Cucurbita pepo (Zucchini)	carcpeB0398
Carg12723	Cp4.1LG19g00880	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12723	CsGy4G019630	Cucumber (Gy14) v2	carcgybB0297
Carg12723	CsaV3_4G031350	Cucumber (Chinese Long) v3	carcucB0314
Carg12723	Cla97C04G069050	Watermelon (97103) v2	carwmbB0292
Carg12723	Bhi03G002178	Wax gourd	carwgoB0373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12723	Cucumber (Gy14) v1	carcgyB0336
Carg12723	Cucurbita maxima (Rimu)	carcmaB0398
Carg12723	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12723	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12723	Melon (DHL92) v3.5.1	carmeB0287
Carg12723	Melon (DHL92) v3.5.1	carmeB0288
Carg12723	Melon (DHL92) v3.6.1	carmedB0298
Carg12723	Melon (DHL92) v3.6.1	carmedB0299
Carg12723	Watermelon (97103) v1	carwmB0274
Carg12723	Watermelon (97103) v1	carwmB0277
Carg12723	Watermelon (97103) v1	carwmB0278