CsaV3_4G031340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 21733230 .. 21733846 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGAACATTGGCAAATAATAAGCGAGCACATCATTGCATGGGTCAAGCATTATCGTAGAGCAAGACCTTTCTCGCACTTAATTGAATAATTGTGCTAAAGGGCATGCCGACGAGAGAAACTTCCTCAGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

mRNA sequence

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

Coding sequence (CDS)

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

Protein sequence

MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKERCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL

Homology

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BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KGN54872.1 (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 8.0e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60
           MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK
Sbjct: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60

Query: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120
           KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE
Sbjct: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120

Query: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 163
           RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL
Sbjct: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 162

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KGN58104.1 (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQ-----LLPHNLNTEAIIWLVF 62
           NE    ++   + QD++ ALKKVV  +T  D    G YQ     +  HN NT+A +WLVF
Sbjct: 41  NEEQQYVMIKGQKQDVDEALKKVVCSKTKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVF 100

Query: 63  VKKKIMPTRHDNNISMERVMLVYCIMKEILVEV 91
           VKKKIM TR D+ ISM+++ML+YCIM+EI V V
Sbjct: 101 VKKKIMSTRPDSTISMDKIMLIYCIMEEIPVNV 133

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 55/120 (45.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 53  IWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEIL------------------------- 112
           IWLV +KKKIMPTRH + ISMERVMLVYCIMK+IL                         
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 113 -------------------VEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKERCKEVEEV 129
                              VEVKDGIW  S LH IIAIH    K K LK KE CK V+E+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEI 147

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 26/81 (32.10%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 6    GHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPT 65
            G++IL +P  + +E A + +  P     I+  GK  L P ++N +A +W+  VK +++PT
Sbjct: 1187 GNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPT 1246

Query: 66   RHDNNISMERVMLVYCIMKEI 87
             +D++I   R M+VY ++K +
Sbjct: 1247 SYDSSIKRNRAMIVYILVKGV 1267

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KGN44535.1 (hypothetical protein Csa_7G327740 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-06
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWL 56
           NE+G  I KN   +D++  LK + W +T  D  PT KYQL  HNLNT A IWL
Sbjct: 137 NEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNTCASIWL 189

[Close]

BLAST of CsaV3_4G031340 vs. TrEMBL
Match: tr|A0A0A0L2P0|A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 5.3e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60
           MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK
Sbjct: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60

Query: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120
           KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE
Sbjct: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120

Query: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 163
           RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL
Sbjct: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 162

[Close]

BLAST of CsaV3_4G031340 vs. TrEMBL
Match: tr|A0A0A0LAY9|A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.1e-14
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQ-----LLPHNLNTEAIIWLVF 62
           NE    ++   + QD++ ALKKVV  +T  D    G YQ     +  HN NT+A +WLVF
Sbjct: 41  NEEQQYVMIKGQKQDVDEALKKVVCSKTKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVF 100

Query: 63  VKKKIMPTRHDNNISMERVMLVYCIMKEILVEV 91
           VKKKIM TR D+ ISM+++ML+YCIM+EI V V
Sbjct: 101 VKKKIMSTRPDSTISMDKIMLIYCIMEEIPVNV 133

[Close]

BLAST of CsaV3_4G031340 vs. TrEMBL
Match: tr|A0A0A0LAN0|A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.2e-14
Identity = 55/120 (45.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 53  IWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEIL------------------------- 112
           IWLV +KKKIMPTRH + ISMERVMLVYCIMK+IL                         
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 113 -------------------VEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKERCKEVEEV 129
                              VEVKDGIW  S LH IIAIH    K K LK KE CK V+E+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEI 147

[Close]

BLAST of CsaV3_4G031340 vs. TrEMBL
Match: tr|A0A0A0K4F2|A0A0A0K4F2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWL 56
           NE+G  I KN   +D++  LK + W +T  D  PT KYQL  HNLNT A IWL
Sbjct: 137 NEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNTCASIWL 189

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54872.1	8.0e-86	100.00	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]
KGN58104.1	1.1e-13	49.46	hypothetical protein Csa_3G511970 [Cucumis sativus]	[more]
KGN57727.1	1.4e-13	45.83	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
XP_022154847.1	1.7e-06	32.10	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
KGN44535.1	8.2e-06	50.94	hypothetical protein Csa_7G327740 [Cucumis sativus]	[more]

BLAST of CsaV3_4G031340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2P0\|A0A0A0L2P0_CUCSA	5.3e-86	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1	[more]
tr\|A0A0A0LAY9\|A0A0A0LAY9_CUCSA	7.1e-14	49.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511970 PE=4 SV=1	[more]
tr\|A0A0A0LAN0\|A0A0A0LAN0_CUCSA	9.2e-14	45.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]
tr\|A0A0A0K4F2\|A0A0A0K4F2_CUCSA	5.4e-06	50.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031340.1	CsaV3_4G031340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031340	Silver-seed gourd	carcucB0314
CsaV3_4G031340	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031340	Cucumber (Gy14) v1	cgycucB543
CsaV3_4G031340	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031340	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031340	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031340	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031340	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031340	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031340	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031340	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031340	Melon (DHL92) v3.5.1	cucmeB332
CsaV3_4G031340	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G031340	Melon (DHL92) v3.5.1	cucmeB343
CsaV3_4G031340	Melon (DHL92) v3.6.1	cucmedB327
CsaV3_4G031340	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G031340	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031340	Watermelon (97103) v1	cucwmB348
CsaV3_4G031340	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031340	Wax gourd	cucwgoB402
CsaV3_4G031340	Wax gourd	cucwgoB413