CsaV3_4G031040 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031040
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosomal protein L37, mitochondrial
Location	chr4 : 21218205 .. 21219651 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGTGTCCACCCCTATTGGTTGGGGTCGCTGGCTGTGGGTCCTGCTTTTGTACGGGTGTTGGGGCAAATGGGAATGGCTGGGTAGTATTCAAGGATCTTTTGTGTTAGAATTAGTTGTCTTGAATTTTGTGATAGAACTGTAGTTCTTGGGAGGAGAGAGCAGTCCTCTTATTTGGCTGAGTTTACCGTGCTCCTTTGTTAGTTATTTTCAATAAGAAAACATTCCCCTGTTCTGTTCATTTGTGTTCTTTTATTAGTTGTGTTGGCCGTTGCCTTGCAGTTTGGAAAACACTTTGGCACCAAATAGTTCGTCCAGTAATTTATTCACAAGTGGAATTGGGTACTTGTTACGAATAATGGGCTTGTTTAAAACCCCATAATCTCAACACCAGCTTCATCCTTCTTTCACGAATGAAAATTTTGACCTCATATTGGCTTGGTTAAAATCCTTACTTGGCTGGATTGTACTAGTTAATTAACATTTCACGAATTAAGCTTTTGATCTCATCGTTTGGAATTGAGGATGTCTGAAGGCTACACATTCTCCGGGCCCAACTCCTACATGTTTGCAGTTTCCTTGGATTTGATTATCATCGGATATTGTCCAACTGTAATATATTATTGGTTACAACTCCAGTGGTGCTTGTTCAAATGCCCTGTGGGGTAAGTTTGAATTTGCCGCTTCTACCACTACACCAATACATTTATCTCACTTCTGTGGTTAGGAATTTGTCGATGAGGGAGATTCTCCAAAATCAAACTAGGTGTACATTAGAGGGATTGGATGTCTAAGCAGTAAGCGATGCTCGTTCAACCATCTGATTGAAACATACCTACCATTTTATGTTTCTAATGACGGATTTTTCCTTGTTGTATAATTTTGTTTGCTGTTTGTTTTAATCTCATATTGTTTAATCATCATTTGATCCTAGTTTCATCTGTGAAAGTAGGAACTTCAACGCATACCACGTTGGCCAGTGAATTATTTCAACAGAATTTAATAACTCTAAATGTTTGTTTCTGTTTTGCAGAAAAAGAAAAATATGAGCCAAATTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTCTGAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCTGAAAGTCTTCCCTACGCAGATCTCAAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA

mRNA sequence

ATGGGAAACTGTGTCCACCCCTATTGGTTGGGGTCGCTGGCTGTGGGTCCTGCTTTTGTACGGGTGTTGGGGCAAATGGGAATGGCTGGTTTGGAAAACACTTTGGCACCAAATAGTTCGTCCAGTAATTTATTCACAAGTGGAATTGGGCTACACATTCTCCGGGCCCAACTCCTACATGTTTGCAGTTTCCTTGGATTTGATTATCATCGGATATTGTCCAACTGTAATATATTATTGGTTACAACTCCAGTGGTGCTTGTTCAAATGCCCTGTGGGAAAAAGAAAAATATGAGCCAAATTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTCTGAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCTGAAAGTCTTCCCTACGCAGATCTCAAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA

Coding sequence (CDS)

ATGGGAAACTGTGTCCACCCCTATTGGTTGGGGTCGCTGGCTGTGGGTCCTGCTTTTGTACGGGTGTTGGGGCAAATGGGAATGGCTGGTTTGGAAAACACTTTGGCACCAAATAGTTCGTCCAGTAATTTATTCACAAGTGGAATTGGGCTACACATTCTCCGGGCCCAACTCCTACATGTTTGCAGTTTCCTTGGATTTGATTATCATCGGATATTGTCCAACTGTAATATATTATTGGTTACAACTCCAGTGGTGCTTGTTCAAATGCCCTGTGGGAAAAAGAAAAATATGAGCCAAATTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTCTGAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCTGAAAGTCTTCCCTACGCAGATCTCAAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA

Protein sequence

MGNCVHPYWLGSLAVGPAFVRVLGQMGMAGLENTLAPNSSSSNLFTSGIGLHILRAQLLHVCSFLGFDYHRILSNCNILLVTTPVVLVQMPCGKKKNMSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

Homology

[Close]

BLAST of CsaV3_4G031040 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 72  ILSNCNILLVTTPVVLVQMPCGKKKNM--SQIRLFRRNIIVSSKNLIQLTSVRTFAAGGK 131
           +L NCNILLVT P+VLVQMPCGKKK M  SQIR FRRNIIVSSK+LIQLTSVR+FAAGGK
Sbjct: 2   LLDNCNILLVTFPMVLVQMPCGKKKKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGK 61

Query: 132 SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHP 191
           SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHP
Sbjct: 62  SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHP 121

Query: 192 PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK 229
           PLSELRRKNAESLPYADL+RF+KLDTRARIKENNSIKAK
Sbjct: 122 PLSELRRKNAESLPYADLRRFVKLDTRARIKENNSIKAK 160

[Close]

BLAST of CsaV3_4G031040 vs. NCBI nr
Match: XP_004144674.2 (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus] >KGN54845.1 hypothetical protein Csa_4G539610 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 4.6e-63
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           MSQ+RLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 218 RIKENNSIKAK 229
           RIKENNSIKAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of CsaV3_4G031040 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 1.1e-59
Identity = 123/131 (93.89%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 3   LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 62

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRKNAESLPYADL+RF+KLDTRA
Sbjct: 63  VGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDTRA 122

Query: 218 RIKENNSIKAK 229
           RIKENNSIKAK
Sbjct: 123 RIKENNSIKAK 133

[Close]

BLAST of CsaV3_4G031040 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 4.9e-49
Identity = 107/131 (81.68%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           MSQIRLFRR+++ ++K+LI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTTV
Sbjct: 3   MSQIRLFRRSLL-NTKDLIKLTNVRTFAAGGK-KKGSKGGAATDAPKASILSKEVKSTTV 62

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPK+MADSEYP WLW L++K P LSELRRK+A++LPY DLKRF+KLDTRA
Sbjct: 63  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 122

Query: 218 RIKENNSIKAK 229
           RIKENNS KAK
Sbjct: 123 RIKENNSSKAK 131

[Close]

BLAST of CsaV3_4G031040 vs. NCBI nr
Match: XP_022154133.1 (54S ribosomal protein L37, mitochondrial-like [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           MSQ RLFR   I+++K+ I++TSVRTFAAGGK KKGSKGGAAAD PKASILSKEVKS+TV
Sbjct: 3   MSQSRLFRS--IINAKDAIKVTSVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSSTV 62

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPK+MADSEYP WLW L++KHP LSELRRKN E+LPY DLKRF+KLD RA
Sbjct: 63  VGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 122

Query: 218 RIKENNSIKAK 229
            IKENNSIKAK
Sbjct: 123 SIKENNSIKAK 130

[Close]

BLAST of CsaV3_4G031040 vs. TAIR10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 141 DAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAE 200
           DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLW+LL+K P LSELRRKN E
Sbjct: 38  DAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVE 97

Query: 201 SLPYADLKRFIKLDTRARIKENNSIKAK 229
           +LPY DLKRF+KLDTR +IKENNSIKAK
Sbjct: 98  TLPYDDLKRFVKLDTRGKIKENNSIKAK 125

[Close]

BLAST of CsaV3_4G031040 vs. TAIR10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 79/132 (59.85%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTT 157
           M+ IR+F  + I  SK++++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ 
Sbjct: 1   MNLIRMF-GDSISRSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 158 VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTR 217
           VV AN LK+G DPKI+ +S++P +LW+LL+K P LSELRRKN E+L + DLKRF+KLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 218 ARIKENNSIKAK 229
           ARIKEN+SIKAK
Sbjct: 121 ARIKENHSIKAK 131

[Close]

BLAST of CsaV3_4G031040 vs. Swiss-Prot
Match: sp|Q9CPW3|RM54_MOUSE (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 132 KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWNLLNKHP 191
           KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  +N  P
Sbjct: 42  KGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYPTWLFQ-VNLGP 101

Query: 192 PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSI 226
           P  +L     ES  Y  L R   +    R+ +N  +
Sbjct: 102 P-KKLEELEPESREYWRLLRKQNIWRHNRLSKNKKL 135

[Close]

BLAST of CsaV3_4G031040 vs. TrEMBL
Match: tr|A0A1S4DUD4|A0A1S4DUD4_CUCME (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.4e-71
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 72  ILSNCNILLVTTPVVLVQMPCGKKKNM--SQIRLFRRNIIVSSKNLIQLTSVRTFAAGGK 131
           +L NCNILLVT P+VLVQMPCGKKK M  SQIR FRRNIIVSSK+LIQLTSVR+FAAGGK
Sbjct: 2   LLDNCNILLVTFPMVLVQMPCGKKKKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGK 61

Query: 132 SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHP 191
           SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHP
Sbjct: 62  SKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHP 121

Query: 192 PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK 229
           PLSELRRKNAESLPYADL+RF+KLDTRARIKENNSIKAK
Sbjct: 122 PLSELRRKNAESLPYADLRRFVKLDTRARIKENNSIKAK 160

[Close]

BLAST of CsaV3_4G031040 vs. TrEMBL
Match: tr|A0A0A0KYS4|A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.0e-63
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           MSQ+RLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 218 RIKENNSIKAK 229
           RIKENNSIKAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of CsaV3_4G031040 vs. TrEMBL
Match: tr|A0A1S3B544|A0A1S3B544_CUCME (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.0e-60
Identity = 123/131 (93.89%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 98  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 157
           +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 3   LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 62

Query: 158 VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 217
           VGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRKNAESLPYADL+RF+KLDTRA
Sbjct: 63  VGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDTRA 122

Query: 218 RIKENNSIKAK 229
           RIKENNSIKAK
Sbjct: 123 RIKENNSIKAK 133

[Close]

BLAST of CsaV3_4G031040 vs. TrEMBL
Match: tr|A0A0A0KP92|A0A0A0KP92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218850 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.6e-43
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 97  NMSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTT 156
           N++QI LFRR+IIV+SK+LIQLTSVRTF AGGKSKKGSKGGAA DAPKASIL        
Sbjct: 4   NLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL-------- 63

Query: 157 VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTR 216
            +GANIL EG DPK+MADSEY  WLW+LL+KH PLSELRR+N ++LPYAD K F+KLDTR
Sbjct: 64  -IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTR 123

Query: 217 ARIKENNSIKAK 229
           ARIKEN S +AK
Sbjct: 124 ARIKENTSTEAK 126

[Close]

BLAST of CsaV3_4G031040 vs. TrEMBL
Match: tr|F6I5L7|F6I5L7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0171g00420 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 90/136 (66.18%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 93  GKKKNMSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEV 152
           GK+  M++I+  R   I+ ++  ++L   RTFA GGK+KKGSKGG A+DAPKAS LSKEV
Sbjct: 3   GKEMTMNRIKSVRS--IIITREAVRLVGCRTFAVGGKAKKGSKGGGASDAPKASTLSKEV 62

Query: 153 KSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIK 212
           KSTT VGANILK+G DPK++ DSEYP WLW+LL+K P LSELRRK+ ESLPY  LKRF+K
Sbjct: 63  KSTTTVGANILKDGTDPKVLPDSEYPDWLWHLLDKRPALSELRRKSVESLPYEALKRFVK 122

Query: 213 LDTRARIKENNSIKAK 229
           LD RARIKENN++KAK
Sbjct: 123 LDNRARIKENNNLKAK 136

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899597.1	2.1e-71	91.19	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]	[more]
XP_004144674.2	4.6e-63	99.24	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus] >KGN5...	[more]
XP_008442187.1	1.1e-59	93.89	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
XP_022989738.1	4.9e-49	81.68	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_022154133.1	1.2e-47	80.15	54S ribosomal protein L37, mitochondrial-like [Momordica charantia]	[more]

BLAST of CsaV3_4G031040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01740.1	1.9e-34	76.14	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.9e-34	59.85	Mitochondrial ribosomal protein L37	[more]

BLAST of CsaV3_4G031040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CPW3\|RM54_MOUSE	1.0e-05	38.54	39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1...	[more]

BLAST of CsaV3_4G031040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUD4\|A0A1S4DUD4_CUCME	1.4e-71	91.19	39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KYS4\|A0A0A0KYS4_CUCSA	3.0e-63	99.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1	[more]
tr\|A0A1S3B544\|A0A1S3B544_CUCME	7.0e-60	93.89	54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KP92\|A0A0A0KP92_CUCSA	1.6e-43	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218850 PE=4 SV=1	[more]
tr\|F6I5L7\|F6I5L7_VITVI	1.1e-41	66.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0171g00420 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013870	Ribosomal_L37_mit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031040.1	CsaV3_4G031040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 149..188 e-value: 3.2E-12 score: 46.9
None	No IPR available	PANTHER	PTHR28595	FAMILY NOT NAMED	coord: 101..228

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031040	CSPI04G20610	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031040	Cucsa.357570	Cucumber (Gy14) v1	cgycucB543
CsaV3_4G031040	CsGy4G019380	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031040	MELO3C008981	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G031040	Lsi01G019620	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031040	MELO3C008981.2	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G031040	Cla97C04G069410	Watermelon (97103) v2	cucwmbB306
CsaV3_4G031040	Bhi03G002246	Wax gourd	cucwgoB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031040	Silver-seed gourd	carcucB0314
CsaV3_4G031040	Silver-seed gourd	carcucB0898
CsaV3_4G031040	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031040	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031040	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031040	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031040	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031040	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031040	Wild cucumber (PI 183967)	cpicucB222
CsaV3_4G031040	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031040	Watermelon (97103) v1	cucwmB357
CsaV3_4G031040	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031040	Wax gourd	cucwgoB403