CsaV3_4G028750 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G028750
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosomal protein-like protein
Location	chr4 : 18182671 .. 18184127 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGGATGTTTCCTCGTTTATCTGTTGTCCTACCTTTTTTCCCCCATTAGCCATTATCTCAAAATTTGGGTGCAGCAATGGAAGATTCAGGTTCACCAGCGTCTCCAAATTCTCTCCCAAAAGGTCAAGACAACATTTCTCCAACAGTAAGAAGTGTGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAACGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAATGGGTTTGGGACTGTGATGCCCCATGTTTTTAGGGCTCTCACCAATATTTGGAGTTCTGTTACTAACCTCACGAAGCATTCTTGAATTTTGATTGATACAAAACTAGTTTTCGCTTTTGTGGTTCTGTTTTTCTATTTAGTTCGATCAGGTGGTTGATAGTTGTTGTTGTTGGTTAGATACTCGGGAAATCCTAATATTTGAGTTTAAGCTATGCCTTTTCTTTTCCCTCTTCTTGGATTGGTCTTTCATGATTCACATTTCACTTCGAACGATGATTTCTCGAATTTCATGTAGGGTTCGTTAATTGAAAAGAAATGATAAAAATGTCCAAATCACTTGAAAACTGCTTTTAATATTCATTTTCTGGGTTAAAATTAAGATGTGTTTTAGAGTGATTCTCCAAATGAGATTGACTCAACGGTTGTTTAATCTTTTTACCTAATTGTTGTAATAAAACATGGTAAAATTGATTATAACTATACTAAATCACTCCATGCCTCGTGGGATTAAGTGGCAAATTAGGCTTGAAATTTTCAATTCCAACATTACCTTTTCCAGATGACACTGTTCTCTTTTACAGGGGAAGTAAAGGAGGGTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGTTACCCTCTCACTAAGAGTTGGTGTTATTTATATTCCAGCTCCAAAATACTGCTTTGGATGGTGGCCATTCTATTTCCACTTTTGGCTTAATATTTCTGAAAGTACTCAAGTACAGAAGTTAATTTTTGCTTTTCCGAAATGAATTTATTAGATTCAAAGACAAATTAGGACTTAGGAGTGGGTAAGAACTTCATTTCTTGTGCAAGGGAGTAGGTATCTCCTTACTATGTTTTCTTAGGCATGCTGATATATGTGATGAGATGACTGCTTTGAATTGCCTGTTGGTATGTGCACATGGATAAATTAGTTTGATTAGGTGGGTTGAAATGAGAGATATTTGGGTTTAATTACAGGCCTTCTGGTCTGTCACAACCATGATGAGTG

mRNA sequence

ATGGAAGATTCAGGTTCACCAGCGTCTCCAAATTCTCTCCCAAAAGGTCAAGACAACATTTCTCCAACAGTAAGAAGTGTGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAACGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGGGAAGTAAAGGAGGGTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGTTACCCTCTCACTAAGAGTTGGTGTTATTTATATTCCAGCTCCAAAATACTGCTTTGGATGGTGGCCATTCTATTTCCACTTTTGGCTTAA

Coding sequence (CDS)

ATGGAAGATTCAGGTTCACCAGCGTCTCCAAATTCTCTCCCAAAAGGTCAAGACAACATTTCTCCAACAGTAAGAAGTGTGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAACGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGGGAAGTAAAGGAGGGTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGTTACCCTCTCACTAAGAGTTGGTGTTATTTATATTCCAGCTCCAAAATACTGCTTTGGATGGTGGCCATTCTATTTCCACTTTTGGCTTAA

Protein sequence

MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGEVKEGDYLYDILNKGFQPGYPLTKSWCYLYSSSKILLWMVAILFPLLA

Homology

[Close]

BLAST of CsaV3_4G028750 vs. NCBI nr
Match: XP_011653828.1 (PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus] >KGN54621.1 hypothetical protein Csa_4G385280 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of CsaV3_4G028750 vs. NCBI nr
Match: XP_016899843.1 (PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of CsaV3_4G028750 vs. NCBI nr
Match: XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 9.8e-36
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDD 60
           M DS SPA+ NSLP+  +  +P   S    RK PSPQEL+SHYESQGLTSHDASIKVI+D
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           LQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 114

[Close]

BLAST of CsaV3_4G028750 vs. NCBI nr
Match: XP_022955496.1 (uncharacterized protein LOC111457504 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRS----VRKPPSPQELISHYESQGLTSHDASIKVID 60
           M DS SPA+ NSLP+  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 115

[Close]

BLAST of CsaV3_4G028750 vs. NCBI nr
Match: XP_023527033.1 (uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRS----VRKPPSPQELISHYESQGLTSHDASIKVID 60
           M DS SPA+ NSL +  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 115

[Close]

BLAST of CsaV3_4G028750 vs. TAIR10
Match: AT1G16790.1 (ribosomal protein-related)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-22
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 7   PASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRII 66
           PA+PN+    ++  S   +  +K P+P ELISHY+ +GL   +ASIKVI+DLQNAL R++
Sbjct: 4   PATPNA---AEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVV 63

Query: 67  SSGRGNKDK-RLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           SS R    K +L+  +RK+DA N RLAV+D KL++KPGY ETFALG
Sbjct: 64  SSSRNASSKDKLVTDARKIDAINGRLAVVDAKLETKPGYVETFALG 106

[Close]

BLAST of CsaV3_4G028750 vs. TrEMBL
Match: tr|A0A0A0L3B6|A0A0A0L3B6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of CsaV3_4G028750 vs. TrEMBL
Match: tr|A0A1S4DV46|A0A1S4DV46_CUCME (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.9e-46
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of CsaV3_4G028750 vs. TrEMBL
Match: tr|A0A2N9HZL0|A0A2N9HZL0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20779 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 7   PASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRII 66
           PA+PN+LP  QD  S T    RK P+PQELI+HYESQGL S  ASIKVI+DLQNALFR+I
Sbjct: 4   PATPNALP--QDKTSSTQNQKRKLPTPQELITHYESQGLDSQQASIKVIEDLQNALFRVI 63

Query: 67  SSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           +SGRG KDK + ETSRK+DA N+RLAVLD+K+DSKPG+ ETFA+G
Sbjct: 64  TSGRGKKDKFMAETSRKIDAANTRLAVLDMKVDSKPGFGETFAIG 106

[Close]

BLAST of CsaV3_4G028750 vs. TrEMBL
Match: tr|W9SDG9|W9SDG9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001366 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 7   PASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRII 66
           P +P  LP+ Q          RK PSPQELISHYESQGL S +AS+KVI+DLQ+ALFR+I
Sbjct: 4   PGTPKPLPQSQS-------QKRKLPSPQELISHYESQGLDSREASVKVIEDLQSALFRVI 63

Query: 67  SSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           SSGR  KDK LL+ SRKLD+TNSRLAV+D KLDSKPGY +TFA+G
Sbjct: 64  SSGRAKKDKLLLDASRKLDSTNSRLAVVDAKLDSKPGYVQTFAIG 101

[Close]

BLAST of CsaV3_4G028750 vs. TrEMBL
Match: tr|A0A2I4H297|A0A2I4H297_9ROSI (uncharacterized protein LOC109012860 OS=Juglans regia OX=51240 GN=LOC109012860 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 12  SLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRG 71
           S P+G+D  S      RK P+PQEL+SHYESQGL S +AS KVI+DLQNAL+R+ISSGRG
Sbjct: 11  SPPQGKDAAS----QKRKLPTPQELVSHYESQGLDSQEASTKVIEDLQNALYRVISSGRG 70

Query: 72  NKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
            KDK + +TSRK+DA NSRLAVLD+K+DSKPGY E FA+G
Sbjct: 71  RKDKLMADTSRKVDAANSRLAVLDMKVDSKPGYGEAFAIG 106

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653828.1	1.5e-52	100.00	PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus] >KGN54621.1 hy...	[more]
XP_016899843.1	1.0e-45	90.09	PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo]	[more]
XP_022980748.1	9.8e-36	73.68	uncharacterized protein LOC111480022 [Cucurbita maxima]	[more]
XP_022955496.1	1.3e-35	73.04	uncharacterized protein LOC111457504 [Cucurbita moschata]	[more]
XP_023527033.1	1.4e-34	72.17	uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G028750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16790.1	1.2e-22	52.83	ribosomal protein-related	[more]

BLAST of CsaV3_4G028750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G028750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3B6\|A0A0A0L3B6_CUCSA	9.9e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1	[more]
tr\|A0A1S4DV46\|A0A1S4DV46_CUCME	6.9e-46	90.09	uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=...	[more]
tr\|A0A2N9HZL0\|A0A2N9HZL0_FAGSY	4.8e-31	69.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20779 PE=4 SV=1	[more]
tr\|W9SDG9\|W9SDG9_9ROSA	2.2e-28	66.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001366 PE=4 SV=1	[more]
tr\|A0A2I4H297\|A0A2I4H297_9ROSI	1.9e-27	67.00	uncharacterized protein LOC109012860 OS=Juglans regia OX=51240 GN=LOC109012860 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G028750.1	CsaV3_4G028750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G028750	CSPI04G18380	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G028750	Cucsa.276290	Cucumber (Gy14) v1	cgycucB423
CsaV3_4G028750	Cla010943	Watermelon (97103) v1	cucwmB329
CsaV3_4G028750	MELO3C010416	Melon (DHL92) v3.5.1	cucmeB298
CsaV3_4G028750	ClCG07G014710	Watermelon (Charleston Gray)	cucwcgB341
CsaV3_4G028750	Lsi07G006830	Bottle gourd (USVL1VR-Ls)	cuclsiB329
CsaV3_4G028750	MELO3C010416.2	Melon (DHL92) v3.6.1	cucmedB290
CsaV3_4G028750	Bhi08G001830	Wax gourd	cucwgoB421

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G028750	Bottle gourd (USVL1VR-Ls)	cuclsiB273
CsaV3_4G028750	Watermelon (Charleston Gray)	cucwcgB314
CsaV3_4G028750	Watermelon (97103) v1	cucwmB352
CsaV3_4G028750	Watermelon (97103) v2	cucwmbB301
CsaV3_4G028750	Cucumber (Gy14) v2	cgybcucB171