CsaV3_4G027620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G027620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 16906501 .. 16906850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCATTGAACTATTGTAATTTCGTAATGTAATTTTTTGTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR

Homology

[Close]

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN61227.1 (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 8.3e-04
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 76
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

[Close]

BLAST of CsaV3_4G027620 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsaV3_4G027620 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsaV3_4G027620 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsaV3_4G027620 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-04
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 76
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

The following BLAST results are available for this feature:

BLAST of CsaV3_4G027620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54497.1	1.6e-39	100.00	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]
KGN61228.1	4.5e-10	50.00	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
KGN61229.1	5.0e-09	48.05	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]
KGN61227.1	8.3e-04	53.33	hypothetical protein Csa_2G070930 [Cucumis sativus]	[more]

BLAST of CsaV3_4G027620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G027620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G027620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1R8\|A0A0A0L1R8_CUCSA	1.1e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]
tr\|A0A0A0LHG9\|A0A0A0LHG9_CUCSA	3.0e-10	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
tr\|A0A0A0LJG5\|A0A0A0LJG5_CUCSA	3.3e-09	48.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
tr\|A0A0A0LKF5\|A0A0A0LKF5_CUCSA	5.5e-04	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G027620.1	CsaV3_4G027620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G027620	CsGy4G016360	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G027620	Wax gourd	cucwgoB400
CsaV3_4G027620	Silver-seed gourd	carcucB0511
CsaV3_4G027620	Silver-seed gourd	carcucB0512
CsaV3_4G027620	Silver-seed gourd	carcucB0562
CsaV3_4G027620	Cucumber (Gy14) v1	cgycucB405
CsaV3_4G027620	Cucurbita maxima (Rimu)	cmacucB0803
CsaV3_4G027620	Cucurbita maxima (Rimu)	cmacucB1019
CsaV3_4G027620	Cucurbita maxima (Rimu)	cmacucB1027
CsaV3_4G027620	Cucurbita moschata (Rifu)	cmocucB0788
CsaV3_4G027620	Cucurbita moschata (Rifu)	cmocucB1002
CsaV3_4G027620	Cucurbita moschata (Rifu)	cmocucB1011
CsaV3_4G027620	Cucurbita pepo (Zucchini)	cpecucB0082
CsaV3_4G027620	Cucurbita pepo (Zucchini)	cpecucB0606
CsaV3_4G027620	Cucurbita pepo (Zucchini)	cpecucB0615
CsaV3_4G027620	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G027620	Melon (DHL92) v3.5.1	cucmeB340
CsaV3_4G027620	Melon (DHL92) v3.6.1	cucmedB334
CsaV3_4G027620	Watermelon (Charleston Gray)	cucwcgB312
CsaV3_4G027620	Watermelon (97103) v1	cucwmB360
CsaV3_4G027620	Watermelon (97103) v1	cucwmB361
CsaV3_4G027620	Watermelon (97103) v2	cucwmbB300