CsaV3_4G022050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G022050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 13140031 .. 13141263 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTAGAATGGAACAAACTAAACGTGAAGATAAGCAAAGCTTTTCACAATAGACAGATGAACAACACAACCGGAGATTCGTGGCGGCGAGCGAACGAAGCCAAATCCAATCGGAACAAATCTGACAAAGCATCGGAACGTGGATTTGAACGAAAATGGACAGATCTGGAACCGGTTGGGTTTGCTTCAGAGACCTCGTCGAAGATCTGGAACAGAGGTGGTTTGTTAGTAAGAGAAGGGTGACAGAGATCTGCTACTCATGGTGACTGGAGAAGGGACGACGGGTTGTAGCCACAGCGGATTAATAGAGGAAATCCGAGGAGTTGGGTTTCATGGTGGCAAGCTTCACAAATGGAGAGCGGATATGAAGGTGATGAAATTGGGCGTCGGAGAAGATGCACGAATCAAACAGAGGCGTCGGCTAATCAAACAGATACGTCTTCACTGGTGAGATTCGCAGCAGGAAGGAGTTCTAGTGGCGTTATGGGTTACGTGGATCGAAATTGATGGGAGGCAGAGGAACAGATGAAACGACGACGTTGTTCATCAGCAGGCGGTGGTTTCGAAGGTCGGAAGAGCGGAGATGCACATTTGTGGAGATTCGTTTGTGGATCTTGTTCATATCAGATGTGAGTGGAGATGCGTGAATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGACTGGCGCTGAGGTGAGGTGTGCGATCGCGAAGCGTGTGTGCAACGACAGACATATTTGTGTTCATATCTGAACGGAGAAGACAAAAACGTGCACGGAGAAGACGACGGTCTGTCTTCAGATCTGAACGGAGAAGACAGACACGTGTATAGAGAAGAAGATGAGCAACGGGTGGCTAGCGAGGCTGAGCGGCGTTTTGAGAGAGGAAATGGGTTTTGGTTTCACTTCTTGGGCGAAGAACGAAGAGGAGAGGCAGCGGATGGTTCTGCACCAAGAACAAAAATGGATTTGTAACATTGAGGATGGTTCTGCCTCCGTCGATGAATGATCAACGGAGGCAGATAACGGGGATGTGGTGACAAGGCTCTG

mRNA sequence

ATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGA

Coding sequence (CDS)

ATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGA

Protein sequence

MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELRGQRERKTEGRSALYLGRDRSGLEMV

Homology

[Close]

BLAST of CsaV3_4G022050 vs. NCBI nr
Match: KGN53973.1 (hypothetical protein Csa_4G214840 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR
Sbjct: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 47

[Close]

BLAST of CsaV3_4G022050 vs. NCBI nr
Match: KGN63242.1 (hypothetical protein Csa_2G416810 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDA+ EDFV+GGFHG GSGG+ EKRRSGDEQ FLEEDRSGL+LR
Sbjct: 1  MDLSDARAEDFVVGGFHGRGSGGEYEKRRSGDEQSFLEEDRSGLKLR 47

[Close]

BLAST of CsaV3_4G022050 vs. NCBI nr
Match: KGN60579.1 (hypothetical protein Csa_2G000860 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 5  DAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          DA+TEDFVIGGFHG GSGGKSEKRRSGDE  FLEED SGLELR
Sbjct: 48 DARTEDFVIGGFHGRGSGGKSEKRRSGDEHSFLEEDTSGLELR 90

[Close]

BLAST of CsaV3_4G022050 vs. TrEMBL
Match: tr|A0A0A0KWS7|A0A0A0KWS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G214840 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR
Sbjct: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 47

[Close]

BLAST of CsaV3_4G022050 vs. TrEMBL
Match: tr|A0A0A0LR07|A0A0A0LR07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416810 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDA+ EDFV+GGFHG GSGG+ EKRRSGDEQ FLEEDRSGL+LR
Sbjct: 1  MDLSDARAEDFVVGGFHGRGSGGEYEKRRSGDEQSFLEEDRSGLKLR 47

[Close]

BLAST of CsaV3_4G022050 vs. TrEMBL
Match: tr|A0A0A0LHV2|A0A0A0LHV2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000860 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 5  DAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          DA+TEDFVIGGFHG GSGGKSEKRRSGDE  FLEED SGLELR
Sbjct: 48 DARTEDFVIGGFHGRGSGGKSEKRRSGDEHSFLEEDTSGLELR 90

The following BLAST results are available for this feature:

BLAST of CsaV3_4G022050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53973.1	1.0e-16	100.00	hypothetical protein Csa_4G214840 [Cucumis sativus]	[more]
KGN63242.1	2.6e-12	82.98	hypothetical protein Csa_2G416810 [Cucumis sativus]	[more]
KGN60579.1	5.0e-11	88.37	hypothetical protein Csa_2G000860 [Cucumis sativus]	[more]

BLAST of CsaV3_4G022050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWS7\|A0A0A0KWS7_CUCSA	6.8e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G214840 PE=4 SV=1	[more]
tr\|A0A0A0LR07\|A0A0A0LR07_CUCSA	1.7e-12	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416810 PE=4 SV=1	[more]
tr\|A0A0A0LHV2\|A0A0A0LHV2_CUCSA	3.3e-11	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000860 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G022050.1	CsaV3_4G022050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G022050	CsGy4G012210	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G022050	Silver-seed gourd	carcucB0513
CsaV3_4G022050	Silver-seed gourd	carcucB0559
CsaV3_4G022050	Cucumber (Gy14) v1	cgycucB231
CsaV3_4G022050	Cucurbita maxima (Rimu)	cmacucB0660
CsaV3_4G022050	Cucurbita maxima (Rimu)	cmacucB0726
CsaV3_4G022050	Cucurbita moschata (Rifu)	cmocucB0645
CsaV3_4G022050	Cucurbita moschata (Rifu)	cmocucB0713
CsaV3_4G022050	Cucurbita moschata (Rifu)	cmocucB1003
CsaV3_4G022050	Cucurbita pepo (Zucchini)	cpecucB0346
CsaV3_4G022050	Cucurbita pepo (Zucchini)	cpecucB0614
CsaV3_4G022050	Cucurbita pepo (Zucchini)	cpecucB0908
CsaV3_4G022050	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G022050	Wild cucumber (PI 183967)	cpicucB215
CsaV3_4G022050	Bottle gourd (USVL1VR-Ls)	cuclsiB284
CsaV3_4G022050	Melon (DHL92) v3.5.1	cucmeB294
CsaV3_4G022050	Watermelon (Charleston Gray)	cucwcgB305
CsaV3_4G022050	Watermelon (97103) v1	cucwmB364
CsaV3_4G022050	Wax gourd	cucwgoB405