CsGy4G012210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G012210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 14294695 .. 14294913 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGA

mRNA sequence

ATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGA

Coding sequence (CDS)

ATGGATCTGAGCGATGCGCAAACGGAGGACTTTGTCATCGGTGGGTTTCACGGCGGAGGTAGCGGCGGCAAATCTGAGAAGAGAAGGAGCGGCGACGAGCAGAGGTTCTTGGAGGAAGACAGATCTGGGTTGGAGCTTCGCGGACAGAGAGAAAGGAAAACAGAGGGGAGGTCGGCGCTATACTTGGGAAGAGACAGATCTGGGTTGGAGATGGTGTGA

Protein sequence

MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELRGQRERKTEGRSALYLGRDRSGLEMV

Homology

[Close]

BLAST of CsGy4G012210 vs. NCBI nr
Match: KGN53973.1 (hypothetical protein Csa_4G214840 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR
Sbjct: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 47

[Close]

BLAST of CsGy4G012210 vs. NCBI nr
Match: KGN63242.1 (hypothetical protein Csa_2G416810 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDA+ EDFV+GGFHG GSGG+ EKRRSGDEQ FLEEDRSGL+LR
Sbjct: 1  MDLSDARAEDFVVGGFHGRGSGGEYEKRRSGDEQSFLEEDRSGLKLR 47

[Close]

BLAST of CsGy4G012210 vs. NCBI nr
Match: KGN60579.1 (hypothetical protein Csa_2G000860 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 5  DAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          DA+TEDFVIGGFHG GSGGKSEKRRSGDE  FLEED SGLELR
Sbjct: 48 DARTEDFVIGGFHGRGSGGKSEKRRSGDEHSFLEEDTSGLELR 90

[Close]

BLAST of CsGy4G012210 vs. TrEMBL
Match: tr|A0A0A0KWS7|A0A0A0KWS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G214840 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.7e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR
Sbjct: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 47

[Close]

BLAST of CsGy4G012210 vs. TrEMBL
Match: tr|A0A0A0LR07|A0A0A0LR07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416810 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MDLSDAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          MDLSDA+ EDFV+GGFHG GSGG+ EKRRSGDEQ FLEEDRSGL+LR
Sbjct: 1  MDLSDARAEDFVVGGFHGRGSGGEYEKRRSGDEQSFLEEDRSGLKLR 47

[Close]

BLAST of CsGy4G012210 vs. TrEMBL
Match: tr|A0A0A0LHV2|A0A0A0LHV2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000860 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 5  DAQTEDFVIGGFHGGGSGGKSEKRRSGDEQRFLEEDRSGLELR 48
          DA+TEDFVIGGFHG GSGGKSEKRRSGDE  FLEED SGLELR
Sbjct: 48 DARTEDFVIGGFHGRGSGGKSEKRRSGDEHSFLEEDTSGLELR 90

The following BLAST results are available for this feature:

BLAST of CsGy4G012210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53973.1	1.0e-16	100.00	hypothetical protein Csa_4G214840 [Cucumis sativus]	[more]
KGN63242.1	2.6e-12	82.98	hypothetical protein Csa_2G416810 [Cucumis sativus]	[more]
KGN60579.1	4.9e-11	88.37	hypothetical protein Csa_2G000860 [Cucumis sativus]	[more]

BLAST of CsGy4G012210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G012210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G012210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWS7\|A0A0A0KWS7_CUCSA	6.7e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G214840 PE=4 SV=1	[more]
tr\|A0A0A0LR07\|A0A0A0LR07_CUCSA	1.7e-12	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416810 PE=4 SV=1	[more]
tr\|A0A0A0LHV2\|A0A0A0LHV2_CUCSA	3.2e-11	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000860 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G012210.1	CsGy4G012210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G012210	Csa4G214840	Cucumber (Chinese Long) v2	cgybcuB171
CsGy4G012210	CsaV3_4G022050	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G012210	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G012210	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G012210	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G012210	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G012210	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G012210	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G012210	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G012210	Bottle gourd (USVL1VR-Ls)	cgyblsiB250
CsGy4G012210	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G012210	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G012210	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G012210	Watermelon (97103) v1	cgybwmB323
CsGy4G012210	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G012210	Wild cucumber (PI 183967)	cgybcpiB172
CsGy4G012210	Silver-seed gourd	carcgybB0529
CsGy4G012210	Wax gourd	cgybwgoB384