CsaV3_4G013510 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G013510
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 9847047 .. 9848028 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATGTGACTTCAGTTTTCTTTTGTCAACATTATGAAACCGTAAACCGTAAGTCTAGTATCTAATATATAATGAAAATAACTTAAAAAATCAAATAGCAATTGAAAAGAATTTATAACGTACATAATATCATACAATCATATAGTAATTAGATAGAAAACATATAGCAATCACACGACAATCAAATCAAAATTCCAAGATTATTTTGTTTCAACGAAAATGGATCACACGTCGCATTCTCTTTCTTTCCTCATCCTTCTCCTTCCTCTTCATATTTTCAAATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGAATCAATAATCAGTTGATTAGTTGACGAAGAGAAGAAAAGGAAAGGAAAAATAGTTTAAACATCTTCTTTTAGTAAAACAAGGATAGAGGAATTTAAACCTCCAATTTTAGGAGAAGTACTACATGTCAATTACGGCTAGACTAGATCATTAACAAAATTGCTTGCCAACATGCCACATGGTGTTTTTTGGCATGTAATGGACTATCAAACTAAGAAGATATTATATATTTACAAAGATTTTTATATGATTGACGATTTTGAGTCCGTCAATGATTTATAATCCATCCAAAAAAAAAATTAAATGCAAACTAACCTTATGCTTACATAATGATGCACTTGAGGGTTTTATATAATATCGCGTTAGGGACGTCTCTTCTATCATATCCTTAACCAATCATGTTTATTTGTGAATCTGTGATCTTCATTTTTCTCTACTCTACTGCAATACTTTTATGGTGAAAGCACATAAAAGTTGATAAAGTATGAGAAAAATGAAAATTGTGATAAACATGACTATCGA

mRNA sequence

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA

Coding sequence (CDS)

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA

Protein sequence

MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE

Homology

[Close]

BLAST of CsaV3_4G013510 vs. NCBI nr
Match: KGN53964.1 (hypothetical protein Csa_4G194810 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

[Close]

BLAST of CsaV3_4G013510 vs. TrEMBL
Match: tr|A0A0A0KYR5|A0A0A0KYR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194810 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

The following BLAST results are available for this feature:

BLAST of CsaV3_4G013510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53964.1	6.5e-25	100.00	hypothetical protein Csa_4G194810 [Cucumis sativus]	[more]

BLAST of CsaV3_4G013510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G013510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G013510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYR5\|A0A0A0KYR5_CUCSA	4.3e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194810 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G013510.1	CsaV3_4G013510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G013510	CSPI04G11500	Wild cucumber (PI 183967)	cpicucB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G013510	Silver-seed gourd	carcucB0313
CsaV3_4G013510	Silver-seed gourd	carcucB0662
CsaV3_4G013510	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G013510	Cucumber (Gy14) v1	cgycucB012
CsaV3_4G013510	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G013510	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G013510	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G013510	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G013510	Cucurbita pepo (Zucchini)	cpecucB0085
CsaV3_4G013510	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G013510	Bottle gourd (USVL1VR-Ls)	cuclsiB280
CsaV3_4G013510	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G013510	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G013510	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G013510	Watermelon (97103) v1	cucwmB356
CsaV3_4G013510	Watermelon (97103) v2	cucwmbB309
CsaV3_4G013510	Wax gourd	cucwgoB410