CSPI04G11500 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11500
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9757432 .. 9757719 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGAATCAATAATCAGTTGATTAGTTGACGAAGAGAAGAAAAGGAAAGGAAAAATAGTTTAAACATCTTCTTTTAGTAAAACAAGGATAGAGGAATTTAAACCTCCAATTTT

mRNA sequence

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA

Coding sequence (CDS)

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA
Homology
[Close]
BLAST of CSPI04G11500 vs. TrEMBL
Match: A0A0A0KYR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194810 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

[Close]
BLAST of CSPI04G11500 vs. NCBI nr
Match: gi|700198806|gb|KGN53964.1| (hypothetical protein Csa_4G194810 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

The following BLAST results are available for this feature:
BLAST of CSPI04G11500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYR5_CUCSA2.3e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194810 PE=4 SV=1[more]
BLAST of CSPI04G11500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198806|gb|KGN53964.1|3.3e-25100.00hypothetical protein Csa_4G194810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11500.1CSPI04G11500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G11500Csa4G194810Cucumber (Chinese Long) v2cpicuB183
CSPI04G11500CsaV3_4G013510Cucumber (Chinese Long) v3cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G11500Cucurbita moschata (Rifu)cmocpiB857
CSPI04G11500Melon (DHL92) v3.5.1cpimeB323
CSPI04G11500Watermelon (Charleston Gray)cpiwcgB317
CSPI04G11500Watermelon (97103) v1cpiwmB346
CSPI04G11500Cucurbita pepo (Zucchini)cpecpiB076
CSPI04G11500Cucurbita pepo (Zucchini)cpecpiB498
CSPI04G11500Bottle gourd (USVL1VR-Ls)cpilsiB257
CSPI04G11500Melon (DHL92) v3.6.1cpimedB314
CSPI04G11500Cucumber (Gy14) v2cgybcpiB168
CSPI04G11500Silver-seed gourdcarcpiB0314
CSPI04G11500Silver-seed gourdcarcpiB0661
CSPI04G11500Watermelon (97103) v2cpiwmbB309
CSPI04G11500Wax gourdcpiwgoB408
CSPI04G11500Cucumber (Gy14) v1cgycpiB009
CSPI04G11500Cucurbita maxima (Rimu)cmacpiB672
CSPI04G11500Cucurbita maxima (Rimu)cmacpiB877
CSPI04G11500Cucurbita moschata (Rifu)cmocpiB663