CSPI04G11500 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11500
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9757432 .. 9757719 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGAATCAATAATCAGTTGATTAGTTGACGAAGAGAAGAAAAGGAAAGGAAAAATAGTTTAAACATCTTCTTTTAGTAAAACAAGGATAGAGGAATTTAAACCTCCAATTTT

mRNA sequence

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA

Coding sequence (CDS)

ATGGAAGGGAATTTCAACTGCCATGGCACGACTATAATGAACTTAACTAACATCGCACTTAGACCAGCAATGGTAGAATCTACGCTAGCACTCTATGATCCTCCGCTATCAACTTCTACGTTGACTGCAACTCCGATTCGAACCGACCCCAACAGCCGACCAAAGAATGGTGGAGAGTGA
Homology
[Close]
BLAST of CSPI04G11500 vs. TrEMBL
Match: A0A0A0KYR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194810 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

[Close]
BLAST of CSPI04G11500 vs. NCBI nr
Match: gi|700198806|gb|KGN53964.1| (hypothetical protein Csa_4G194810 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 60
          MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE
Sbjct: 1  MEGNFNCHGTTIMNLTNIALRPAMVESTLALYDPPLSTSTLTATPIRTDPNSRPKNGGE 59

The following BLAST results are available for this feature:
BLAST of CSPI04G11500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYR5_CUCSA2.3e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194810 PE=4 SV=1[more]
BLAST of CSPI04G11500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198806|gb|KGN53964.1|3.3e-25100.00hypothetical protein Csa_4G194810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11500.1CSPI04G11500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G11500Csa4G194810Cucumber (Chinese Long) v2cpicuB183
CSPI04G11500CsaV3_4G013510Cucumber (Chinese Long) v3cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G11500Melon (DHL92) v3.6.1cpimedB314
CSPI04G11500Cucumber (Gy14) v2cgybcpiB168
CSPI04G11500Silver-seed gourdcarcpiB0314
CSPI04G11500Silver-seed gourdcarcpiB0661
CSPI04G11500Watermelon (97103) v2cpiwmbB309
CSPI04G11500Wax gourdcpiwgoB408
CSPI04G11500Cucumber (Gy14) v1cgycpiB009
CSPI04G11500Cucurbita maxima (Rimu)cmacpiB672
CSPI04G11500Cucurbita maxima (Rimu)cmacpiB877
CSPI04G11500Cucurbita moschata (Rifu)cmocpiB663
CSPI04G11500Cucurbita moschata (Rifu)cmocpiB857
CSPI04G11500Melon (DHL92) v3.5.1cpimeB323
CSPI04G11500Watermelon (Charleston Gray)cpiwcgB317
CSPI04G11500Watermelon (97103) v1cpiwmB346
CSPI04G11500Cucurbita pepo (Zucchini)cpecpiB076
CSPI04G11500Cucurbita pepo (Zucchini)cpecpiB498
CSPI04G11500Bottle gourd (USVL1VR-Ls)cpilsiB257