CsaV3_4G013240 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G013240
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transmembrane protein, putative
Location	chr4 : 9607641 .. 9609782 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACATCTAATTGAAAGTAATTAAAAAAGAAAAACGTTTTAAAGTTTTTAGTCTTTCTAGGTATTGTCAATGAGAAGATTCTTAGGTATGGACAGCTGCAAATTACATAATAACCTTTAACTTTCCTCTTCCTTCTAAAAATGAAAGAAAGAAAGAAAGAAAGAATACACTTATCCTATCCTTATCATTTCTAGACAATCCCAGCAAGCAACCGACACACTTTTTAATTAGTTTTTTGGTTCCATTCCTGTGAGGCTGTGGCTTGTTCGAATCACCCAAAAAAATTCACCCACCCAAGTCAACAAAATCATCAAATTCCTCTCATCTTCCTCTCTCAAGTTTTTCATTTCTTTTTTCTTCGCCAAACAACCATCTTCTGAAAGAATTTTCTTCTGCCCATCTAAATATATTCACAAATGAAGCAGCACAAAGAAGAAAGCTAGAAGAATCCAAGAGGGTTTATCATTTGAGTTCTTGGTGGGTCCTTACTGACCCCATCGCCCCCCTTTTGTCATTACTGTTTGAGAGTATTAAAAAAGGATAAGCACTCAAAAAACTACTTCAAATCATTTTGCTTTTGGCAGTCCCCTGTCCAAGAGCAACAAGACACAACTCCTTAGAGGGCTTTGGCTAAAGCACTTCTGTAAAAAAAAAAGTTCTAAGTTTTGAGTTTTGTTTCATATAAAGTTCACCTTGTTGTGACTTTTCTTTCGTTTCTCATCATTCAATCATACATCCTCTATTTATTCATAGTTCTTCTGGAGAAAAAGGAAAAAAAATGGACCTCCATGAATGGGAAATTCTATCAGACGATGGGTTGCATGATTACAAAGATGATCAAAAGAAGATTGTTTCCTCTAAGAGACGTTCAGGTTCTGATGCTAAGATTGTGTTTGATATGAACTACTTCCTTTGTCCATCAATGGATTCTTCTTCCAAGCAGCACATCAGCCAACCGTCTCCTTCAAGATTGGTTAAACAGCCGATTCCTGTTCATCTTCAATTGGATTCACCAATTATCAGAATCCCAGATGATGATTCACTAGCACTGAAGGAAAAAGAAAAAGAAAAGGAGTCCATCGTGATCGGTGTTGTGCCATCAGCCATGAGTGAAAAGGATCAGAAAGGAGCTGGGGAAGCAGATCAAGATACTGTTACTCAAGTTTTCTTCAAGAAAATGAAGGAAAATGAATTCGTCGACATGAAAATAGACTCACCCAGATCCAGTAACAAAGGAACAAAGCCTCAAATTGATGTTGGGCATTATCAGTTTGATGATGGGGGTGAATCAAAAGAGAACATTACAAACTCCCCTAGAATGAACTTGATGAGCCAGAAAAGCAACAAAGAGATTGATGCAAACAAAGATGAGATGAATTGGGATGGATCCGTGGGTGGGTTAAACATATTAAAGTGGAGTTTAAATGGGATTGGAGCCATTTGCTCCTTCGGTGTTGCAGCTGCCACTATTTGTATTCTGTTTCATGGAGGCAACCAACACAAGCTGAGAATCCAGATCTATACCCATGATAAGGTCAGGTCAAAACTATTATGTAATATTACCTCAAATTGTAATAAACAAGCAACTTTTTCTAGAGAATTAACTATTAAGTGAAAATGTTCAGTTATGTAACCCATAAGCTGGAGTAAAGCTTATTTTCGTAGCATTTGTTGCAGAAATTAAAGCAAGCAGTTCAGCAAGCCACTAGATTAAATGAAGCTATCTCAGCAGCAAGAGGACTTCCACAGACAAGAGCTCATATAACCTGTGGTGGACACTATGATGGGATCTAAGGAAGCTAAGAGTTCGCGCTGCCTTGAAGACGAACTCTAACACTAGAGGATGAATTGAGGTGGATATGCCAAAGCCCAGTTCTATTTTTCTATGCAAAGTTTACCATCTCTGTACATAGAGATTATAGCTTTAAGAACAAAAATAGGTTCAGGAGTCCAACCTGGTTTCATACTGGACGGATTCCTAGTCTAAGCCAATACCCAGTGTTGTTCAACTATGAATTTCAAAGGTTTGTATGATTTTATTGTGTCATCCATAATGGTCAGTGTGGAGAAGTATAATATTTTACACAATATATATTTGAAATGAAAGAGATTATTTTAGAAAAACTTGTGGAAGCCTCAAT

mRNA sequence

ATGGACCTCCATGAATGGGAAATTCTATCAGACGATGGGTTGCATGATTACAAAGATGATCAAAAGAAGATTGTTTCCTCTAAGAGACGTTCAGGTTCTGATGCTAAGATTGTGTTTGATATGAACTACTTCCTTTGTCCATCAATGGATTCTTCTTCCAAGCAGCACATCAGCCAACCGTCTCCTTCAAGATTGGTTAAACAGCCGATTCCTGTTCATCTTCAATTGGATTCACCAATTATCAGAATCCCAGATGATGATTCACTAGCACTGAAGGAAAAAGAAAAAGAAAAGGAGTCCATCGTGATCGGTGTTGTGCCATCAGCCATGAGTGAAAAGGATCAGAAAGGAGCTGGGGAAGCAGATCAAGATACTGTTACTCAAGTTTTCTTCAAGAAAATGAAGGAAAATGAATTCGTCGACATGAAAATAGACTCACCCAGATCCAGTAACAAAGGAACAAAGCCTCAAATTGATGTTGGGCATTATCAGTTTGATGATGGGGGTGAATCAAAAGAGAACATTACAAACTCCCCTAGAATGAACTTGATGAGCCAGAAAAGCAACAAAGAGATTGATGCAAACAAAGATGAGATGAATTGGGATGGATCCGTGGGTGGGTTAAACATATTAAAGTGGAGTTTAAATGGGATTGGAGCCATTTGCTCCTTCGGTGTTGCAGCTGCCACTATTTGTATTCTGTTTCATGGAGGCAACCAACACAAGCTGAGAATCCAGATCTATACCCATGATAAGAAATTAAAGCAAGCAGTTCAGCAAGCCACTAGATTAAATGAAGCTATCTCAGCAGCAAGAGGACTTCCACAGACAAGAGCTCATATAACCTGTGGTGGACACTATGATGGGATCTAA

Coding sequence (CDS)

ATGGACCTCCATGAATGGGAAATTCTATCAGACGATGGGTTGCATGATTACAAAGATGATCAAAAGAAGATTGTTTCCTCTAAGAGACGTTCAGGTTCTGATGCTAAGATTGTGTTTGATATGAACTACTTCCTTTGTCCATCAATGGATTCTTCTTCCAAGCAGCACATCAGCCAACCGTCTCCTTCAAGATTGGTTAAACAGCCGATTCCTGTTCATCTTCAATTGGATTCACCAATTATCAGAATCCCAGATGATGATTCACTAGCACTGAAGGAAAAAGAAAAAGAAAAGGAGTCCATCGTGATCGGTGTTGTGCCATCAGCCATGAGTGAAAAGGATCAGAAAGGAGCTGGGGAAGCAGATCAAGATACTGTTACTCAAGTTTTCTTCAAGAAAATGAAGGAAAATGAATTCGTCGACATGAAAATAGACTCACCCAGATCCAGTAACAAAGGAACAAAGCCTCAAATTGATGTTGGGCATTATCAGTTTGATGATGGGGGTGAATCAAAAGAGAACATTACAAACTCCCCTAGAATGAACTTGATGAGCCAGAAAAGCAACAAAGAGATTGATGCAAACAAAGATGAGATGAATTGGGATGGATCCGTGGGTGGGTTAAACATATTAAAGTGGAGTTTAAATGGGATTGGAGCCATTTGCTCCTTCGGTGTTGCAGCTGCCACTATTTGTATTCTGTTTCATGGAGGCAACCAACACAAGCTGAGAATCCAGATCTATACCCATGATAAGAAATTAAAGCAAGCAGTTCAGCAAGCCACTAGATTAAATGAAGCTATCTCAGCAGCAAGAGGACTTCCACAGACAAGAGCTCATATAACCTGTGGTGGACACTATGATGGGATCTAA

Protein sequence

MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQPSPSRLVKQPIPVHLQLDSPIIRIPDDDSLALKEKEKEKESIVIGVVPSAMSEKDQKGAGEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPRMNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQHKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI

Homology

[Close]

BLAST of CsaV3_4G013240 vs. NCBI nr
Match: XP_004147537.1 (PREDICTED: uncharacterized protein LOC101222422 [Cucumis sativus] >KGN53936.1 hypothetical protein Csa_4G192080 [Cucumis sativus])

HSP 1 Score: 545.8 bits (1405), Expect = 8.8e-152
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60
           MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP
Sbjct: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60

Query: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120
           SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE
Sbjct: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120

Query: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180
           ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR
Sbjct: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180

Query: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240
           MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ
Sbjct: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240

Query: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI
Sbjct: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 290

[Close]

BLAST of CsaV3_4G013240 vs. NCBI nr
Match: XP_008441987.1 (PREDICTED: uncharacterized protein LOC103485984 [Cucumis melo])

HSP 1 Score: 522.3 bits (1344), Expect = 1.0e-144
Identity = 274/290 (94.48%), Postives = 283/290 (97.59%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60
           MDLHEWEILSDDGL DYKDDQKKIVS+KRRSGSDAKIVFDMNYFLCPSM+SSSKQHISQP
Sbjct: 1   MDLHEWEILSDDGLLDYKDDQKKIVSAKRRSGSDAKIVFDMNYFLCPSMNSSSKQHISQP 60

Query: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120
           S SRLV+QPIPVHLQLDSPI++IPDD XXXXXXXXXXXXX  IGVVPSAMSEKDQKGA E
Sbjct: 61  SSSRLVRQPIPVHLQLDSPIVKIPDDDXXXXXXXXXXXXXIVIGVVPSAMSEKDQKGAVE 120

Query: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180
           ADQDTVTQVFFKKMKENEFVDMK+DSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR
Sbjct: 121 ADQDTVTQVFFKKMKENEFVDMKLDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180

Query: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240
           MNL+SQKSNKEIDANKDEMNWDGS+GGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ
Sbjct: 181 MNLISQKSNKEIDANKDEMNWDGSMGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240

Query: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHY G+
Sbjct: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYGGL 290

[Close]

BLAST of CsaV3_4G013240 vs. NCBI nr
Match: XP_022949840.1 (uncharacterized protein LOC111453118 [Cucurbita moschata])

HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116
Identity = 230/294 (78.23%), Postives = 244/294 (82.99%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDD-QKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQ 60
           MDLH+WEILSDDGL DYK+D +KKIVS+ R + SDAKIVFDMNYFLCPSMDS   +HI+Q
Sbjct: 1   MDLHDWEILSDDGLLDYKEDRKKKIVSANRTAASDAKIVFDMNYFLCPSMDS---KHITQ 60

Query: 61  P---SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQK 120
           P   S   L KQPIPVH+QLDSPII++PDD                IGVVPS+MSEKDQK
Sbjct: 61  PPRSSSGFLPKQPIPVHIQLDSPIIKVPDD---LTALKEKDKEPMVIGVVPSSMSEKDQK 120

Query: 121 GAGE-ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKE-N 180
           G  E ADQD VTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGE  E N
Sbjct: 121 GGAEAADQDPVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGEGTENN 180

Query: 181 ITNSPRMNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICIL 240
           +TNSPRMNLMSQKS      NKDEMNWDGS GGLNI KWSLNGIGAICSFGVAAATICIL
Sbjct: 181 MTNSPRMNLMSQKS------NKDEMNWDGSNGGLNIFKWSLNGIGAICSFGVAAATICIL 240

Query: 241 FHGGNQHKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYD 289
           FHGG+QHKLRIQIYTHDKKLKQAVQQATRLNEAI+A RG PQ  AHITCGGHYD
Sbjct: 241 FHGGSQHKLRIQIYTHDKKLKQAVQQATRLNEAITATRGRPQIWAHITCGGHYD 282

[Close]

BLAST of CsaV3_4G013240 vs. NCBI nr
Match: XP_022978250.1 (uncharacterized protein LOC111478290 [Cucurbita maxima])

HSP 1 Score: 428.7 bits (1101), Expect = 1.6e-116
Identity = 231/296 (78.04%), Postives = 244/296 (82.43%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQK-KIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQ 60
           MDLH+WEILSDDGL DYKDD+K KIVS+ R S SDA IVFDMNYFLCPSMDS   +HI+Q
Sbjct: 1   MDLHDWEILSDDGLLDYKDDRKTKIVSANRSSASDANIVFDMNYFLCPSMDS---KHITQ 60

Query: 61  P---SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQK 120
           P   S   L KQPIPVH+QLDSPII++PDD                IGVVPS+MSEKDQK
Sbjct: 61  PPRSSSGFLPKQPIPVHIQLDSPIIKVPDD---LMALREKDKEPMVIGVVPSSMSEKDQK 120

Query: 121 GAGEA-DQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKE-N 180
           G  EA DQD VTQVFFKKMKENEFVDMKIDSPRSSNKGTK QIDVGHYQFDDGGE  E N
Sbjct: 121 GGVEATDQDPVTQVFFKKMKENEFVDMKIDSPRSSNKGTKSQIDVGHYQFDDGGEGTENN 180

Query: 181 ITNSPRMNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICIL 240
           +TNSPRMNLMSQKS      NKDEMNWDGS GGLNI KWSLNGIGAICSFGVAAATICIL
Sbjct: 181 MTNSPRMNLMSQKS------NKDEMNWDGSNGGLNIFKWSLNGIGAICSFGVAAATICIL 240

Query: 241 FHGGNQHKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           FHGG+QHKLRIQIYTHDKKLKQAVQQATRLNEAI+A RG PQ  AHITCGGHYDG+
Sbjct: 241 FHGGSQHKLRIQIYTHDKKLKQAVQQATRLNEAITATRGRPQIWAHITCGGHYDGL 284

[Close]

BLAST of CsaV3_4G013240 vs. NCBI nr
Match: XP_023544373.1 (uncharacterized protein LOC111803976 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423.3 bits (1087), Expect = 6.6e-115
Identity = 229/296 (77.36%), Postives = 242/296 (81.76%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQ-KKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQ 60
           MDLH+WEILSDDGL DYKDDQ KKIVS+ R + SDAKIVFDMNYFLCPSMDS   +HI+Q
Sbjct: 1   MDLHDWEILSDDGLLDYKDDQKKKIVSANRTAASDAKIVFDMNYFLCPSMDS---KHITQ 60

Query: 61  P---SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQK 120
           P   S   L KQPIPVH+QLD+PII++PDD                IGVVPS+MSEK QK
Sbjct: 61  PPRSSSGFLPKQPIPVHIQLDTPIIKVPDD---LMALKEKDKEPMVIGVVPSSMSEKHQK 120

Query: 121 GAGE-ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKE-N 180
           G  E  DQD VTQVFFKKMKENEFVDMKIDSPRSSNKGTK QIDVGHYQFDDGGE  E N
Sbjct: 121 GGVETTDQDPVTQVFFKKMKENEFVDMKIDSPRSSNKGTKSQIDVGHYQFDDGGEGTENN 180

Query: 181 ITNSPRMNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICIL 240
           +TNSPRMNLMSQKS      NKDEMNWDGS GGLNI KWSLNGIGAICSFGVAAATICIL
Sbjct: 181 MTNSPRMNLMSQKS------NKDEMNWDGSNGGLNIFKWSLNGIGAICSFGVAAATICIL 240

Query: 241 FHGGNQHKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           FHGG+QHKLRIQIYTHDKKLKQAVQQATRLNEAI+A RG PQ  AHITCGGHYD I
Sbjct: 241 FHGGSQHKLRIQIYTHDKKLKQAVQQATRLNEAITATRGRPQIWAHITCGGHYDEI 284

[Close]

BLAST of CsaV3_4G013240 vs. TAIR10
Match: AT5G18130.1 (unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-30
Identity = 113/312 (36.22%), Postives = 155/312 (49.68%), Query Frame = 0


Query: 1   MDLHEWEIL---SDDGLH-DYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQH 60
           MDL +WEIL   +  GL  D   ++   V+   R+ + +   FD +YF+CP  DS  K  
Sbjct: 1   MDLEDWEILPKINYKGLELDLGHEEDHEVTKMMRNTAKS---FDSDYFICPIQDSVGKTE 60

Query: 61  I----SQPSPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSE 120
                S   P++L++  IP+  +  SP+    DD                   +    SE
Sbjct: 61  FLHQRSSVVPTQLLQ--IPITWEPLSPV----DDKDHNK-------------YLDPDFSE 120

Query: 121 KDQKGAGEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDD--GGE 180
            D +   E+      ++ FKK KE EF DMKIDSP +      PQ D  H   +   GGE
Sbjct: 121 PDPELLTESFPS--PRITFKKSKETEFADMKIDSPAARFTSPLPQNDERHSDSEGGLGGE 180

Query: 181 SKENITNSPRMNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGV--AA 240
           S + I  S         S KE+D ++ E          N+ K  LNGIGAICSFGV  AA
Sbjct: 181 SYDEIMGSEVEESSDLSSKKEVDWDEGERT--------NLWKKGLNGIGAICSFGVAAAA 240

Query: 241 ATICILFHG------GNQHK---LRIQIYTHD-KKLKQAVQQATRLNEAISAARGLPQTR 291
           ATIC+ F G      G ++K   LR QIY+ D K++ + V+ AT+LNEAIS  +GLP  R
Sbjct: 241 ATICVFFLGHNSSIQGGRNKNQILRFQIYSDDNKRMNEVVKHATKLNEAISVMKGLPVAR 280

[Close]

BLAST of CsaV3_4G013240 vs. TAIR10
Match: AT3G03870.2 (unknown protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-25
Identity = 112/307 (36.48%), Postives = 149/307 (48.53%), Query Frame = 0


Query: 1   MDLHEWE-ILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQ 60
           MDL +WE +L  +   D   D  +          D      M+YFLCPS      +  S 
Sbjct: 1   MDLEDWELVLPKNSFKDLDLDHDE----------DHHGAMVMDYFLCPSTKDPLPKTESP 60

Query: 61  PS----PSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQ 120
           P     P ++++ PI     LD    +IP++    XXXXXXXXXXX +            
Sbjct: 61  PRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEXXXXXXXXXXXTL------------ 120

Query: 121 KGAGEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENI 180
                 D  +  +V FK MK+ EF DMKID P         +I     Q DD      ++
Sbjct: 121 ----STDSVSSPRVSFKIMKDTEFADMKIDPP--------ARITSPLPQIDDAASKPSDL 180

Query: 181 TNSPRMNLMSQKSNKEIDANKDEMNWDGSVG-GLNILKWSLNGIGAICSFGV--AAATIC 240
                +     +  KE+    +E + DGS G  LN+ K  LNGIGAICSFGV  AAAT+C
Sbjct: 181 EGGDDL-----RDKKEVVL--EEEDEDGSGGERLNLWKAGLNGIGAICSFGVAAAAATVC 240

Query: 241 ILFHGGNQHK--------LRIQIYTHD-KKLKQAVQQATRLNEAISAARGLPQTRAHITC 291
           + F G N  K        LR QIY+ D K++K+ V  AT+LNEAI   +G+P  RA I+ 
Sbjct: 241 VFFLGHNNIKICKNKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGMKGVPVVRAQISF 266

[Close]

BLAST of CsaV3_4G013240 vs. TrEMBL
Match: tr|A0A0A0L1C2|A0A0A0L1C2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192080 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 5.8e-152
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60
           MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP
Sbjct: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60

Query: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120
           SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE
Sbjct: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120

Query: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180
           ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR
Sbjct: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180

Query: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240
           MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ
Sbjct: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240

Query: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI
Sbjct: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 290

[Close]

BLAST of CsaV3_4G013240 vs. TrEMBL
Match: tr|A0A1S3B4M8|A0A1S3B4M8_CUCME (uncharacterized protein LOC103485984 OS=Cucumis melo OX=3656 GN=LOC103485984 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 6.9e-145
Identity = 274/290 (94.48%), Postives = 283/290 (97.59%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKDDQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQP 60
           MDLHEWEILSDDGL DYKDDQKKIVS+KRRSGSDAKIVFDMNYFLCPSM+SSSKQHISQP
Sbjct: 1   MDLHEWEILSDDGLLDYKDDQKKIVSAKRRSGSDAKIVFDMNYFLCPSMNSSSKQHISQP 60

Query: 61  SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGAGE 120
           S SRLV+QPIPVHLQLDSPI++IPDD XXXXXXXXXXXXX  IGVVPSAMSEKDQKGA E
Sbjct: 61  SSSRLVRQPIPVHLQLDSPIVKIPDDDXXXXXXXXXXXXXIVIGVVPSAMSEKDQKGAVE 120

Query: 121 ADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180
           ADQDTVTQVFFKKMKENEFVDMK+DSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR
Sbjct: 121 ADQDTVTQVFFKKMKENEFVDMKLDSPRSSNKGTKPQIDVGHYQFDDGGESKENITNSPR 180

Query: 181 MNLMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240
           MNL+SQKSNKEIDANKDEMNWDGS+GGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ
Sbjct: 181 MNLISQKSNKEIDANKDEMNWDGSMGGLNILKWSLNGIGAICSFGVAAATICILFHGGNQ 240

Query: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYDGI 291
           HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHY G+
Sbjct: 241 HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCGGHYGGL 290

[Close]

BLAST of CsaV3_4G013240 vs. TrEMBL
Match: tr|A0A2P4I1T3|A0A2P4I1T3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26369 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 161/306 (52.61%), Postives = 198/306 (64.71%), Query Frame = 0


Query: 1   MDLHEWEIL-SDDGLHDYKDD-QKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHIS 60
           MDL EWE L  DDG  D+ +D +KK    KR    D K VF+MNYF+CPS   + ++ I 
Sbjct: 1   MDLDEWEFLPDDDGFLDFHEDGEKKKFLGKR--NPDPKTVFNMNYFICPS--PTPRKIIE 60

Query: 61  QPSPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKGA 120
            P  S L  Q + V + L+ PI +  DD                I V+PSA S  ++   
Sbjct: 61  PPRNSGLPSQLVTVPIHLEPPIGKAHDD-DEQQLVKQITKVPIEISVLPSA-SITEKINH 120

Query: 121 GEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENIT-N 180
            EADQDTV+QVFF KMKENEFVDMK+DSP+S  +G  PQID   +QF+D GE+ E ++  
Sbjct: 121 MEADQDTVSQVFF-KMKENEFVDMKMDSPKSGARGFLPQIDT--FQFEDKGEALEGMSMT 180

Query: 181 SPRMN-----LMSQKSNKEIDANKDEMNWDGSVGGLNILKWSLNGIGAICSFGVAAATIC 240
           SPRM      ++S+KS+ + D N +E+NWD S G LNI KWSL GIGAICSFGVAAATIC
Sbjct: 181 SPRMKVEKDMVLSKKSSMDCDTNIEEVNWDESNGRLNIWKWSLTGIGAICSFGVAAATIC 240

Query: 241 ILFHG------GNQH--KLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHITCG 291
           ILF G       NQH  KLR QIYT DK++KQ V  AT+LNEAISA RG+P TRAHIT G
Sbjct: 241 ILFFGTQQTNKHNQHNQKLRFQIYTDDKRIKQVVHHATKLNEAISAVRGVPMTRAHITYG 297

[Close]

BLAST of CsaV3_4G013240 vs. TrEMBL
Match: tr|A0A2N9FCJ4|A0A2N9FCJ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12483 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.2e-61
Identity = 150/308 (48.70%), Postives = 195/308 (63.31%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKD-DQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSK--QHI 60
           MDL EWE L DDG  D+ +  +KK    KR   SD K VF+MNYF+CPS ++  K  +  
Sbjct: 1   MDLEEWEFLPDDGFLDFHEGGEKKNFLGKR--NSDPKTVFNMNYFICPSPNNPKKIIEPS 60

Query: 61  SQPSPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKDQKG 120
           S P  SRL  Q + V + L+ P  +                    I V+  A        
Sbjct: 61  SPPGNSRLPSQLVTVPIHLEPPSGKTHHHDDELVVNEIITKVPIEINVLSPA------SP 120

Query: 121 AGEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGESKENIT- 180
              ADQDTV++VFF KMKENEFVDMK+DSP+S ++G  PQID   +QF+D GE+ E+ + 
Sbjct: 121 PNTADQDTVSKVFF-KMKENEFVDMKMDSPKSGSRGFMPQIDT--FQFEDKGETLESKSM 180

Query: 181 NSPRMN-----LMSQKSNKEIDANK-DEMNWDGSVGGLNILKWSLNGIGAICSFGVAAAT 240
           +SPRM      ++S+K++ + DAN  +E+NW+ + G LNI KWSL GIGAICSFGVAAAT
Sbjct: 181 SSPRMKVEKDLVLSKKNSMDCDANNIEEINWEETNGKLNIWKWSLTGIGAICSFGVAAAT 240

Query: 241 ICILFHGGNQ--------HKLRIQIYTHDKKLKQAVQQATRLNEAISAARGLPQTRAHIT 291
           IC+LF G  Q        HKLR QIYT DK++KQ V QA++LN+AISAARG+P +RAHIT
Sbjct: 241 ICVLFFGSQQRNNHLQHNHKLRFQIYTDDKRIKQVVHQASKLNDAISAARGVPMSRAHIT 297

[Close]

BLAST of CsaV3_4G013240 vs. TrEMBL
Match: tr|A0A2I4G389|A0A2I4G389_9ROSI (uncharacterized protein LOC109004312 OS=Juglans regia OX=51240 GN=LOC109004312 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.8e-59
Identity = 157/317 (49.53%), Postives = 205/317 (64.67%), Query Frame = 0


Query: 1   MDLHEWEILSDDGLHDYKD-DQKKIVSSKRRSGSDAKIVFDMNYFLCPSMDSSSKQHISQ 60
           MDL EWE L DD   D+++  +KKI   KR   SD K +F+MNYF+CPS +S   + I++
Sbjct: 1   MDLDEWEYLPDDAFLDFREVGEKKIFWGKR--SSDPKTIFNMNYFICPSPNS---RKINE 60

Query: 61  P-----SPSRLVKQPIPVHLQLDSPIIRIPDDXXXXXXXXXXXXXXXXIGVVPSAMSEKD 120
           P      PS+LV   +P+H +  S   +  DD                I VV SA+  K+
Sbjct: 61  PPGNSMMPSQLV--TVPIHFE-SSGTGKAQDD----ELHKDIAKVPIEISVVRSAVVPKE 120

Query: 121 Q----KGAGEADQDTVTQVFFKKMKENEFVDMKIDSPRSSNKGTKPQIDVGHYQFDDGGE 180
                 GA EADQDTV+QVFF KMKENEFVDMK+DSPRS ++G   QID G +QF++ GE
Sbjct: 121 NIAPITGAMEADQDTVSQVFF-KMKENEFVDMKMDSPRSGSRGFMAQIDSGSFQFEEKGE 180

Query: 181 SKENITNSPRMNL-----MSQKSNKEI--DANKDEMNWDGSVGGLNILKWSLNGIGAICS 240
           + E+ T SPR  +     MS+K+  ++  D +++E+ W+ + G LNI KWSL GIGAICS
Sbjct: 181 ALESKT-SPRNRVENEMAMSKKNTMDMDGDGSQEEVTWEENSGRLNIWKWSLTGIGAICS 240

Query: 241 FGVAAATICILFHG---GN-----QHKLRIQIYTHDK-KLKQAVQQATRLNEAISAAR-G 291
           FGVAAATICILF G   GN     + +LR +IYT DK ++KQ V QAT+LN+AISA R G
Sbjct: 241 FGVAAATICILFFGNQPGNKQHQKEERLRFRIYTDDKIRIKQVVNQATKLNDAISALRGG 300

The following BLAST results are available for this feature:

BLAST of CsaV3_4G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147537.1	8.8e-152	100.00	PREDICTED: uncharacterized protein LOC101222422 [Cucumis sativus] >KGN53936.1 hy...	[more]
XP_008441987.1	1.0e-144	94.48	PREDICTED: uncharacterized protein LOC103485984 [Cucumis melo]	[more]
XP_022949840.1	1.2e-116	78.23	uncharacterized protein LOC111453118 [Cucurbita moschata]	[more]
XP_022978250.1	1.6e-116	78.04	uncharacterized protein LOC111478290 [Cucurbita maxima]	[more]
XP_023544373.1	6.6e-115	77.36	uncharacterized protein LOC111803976 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G013240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18130.1	7.9e-30	36.22	unknown protein	[more]
AT3G03870.2	1.6e-25	36.48	unknown protein	[more]

BLAST of CsaV3_4G013240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G013240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1C2\|A0A0A0L1C2_CUCSA	5.8e-152	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192080 PE=4 SV=1	[more]
tr\|A0A1S3B4M8\|A0A1S3B4M8_CUCME	6.9e-145	94.48	uncharacterized protein LOC103485984 OS=Cucumis melo OX=3656 GN=LOC103485984 PE=...	[more]
tr\|A0A2P4I1T3\|A0A2P4I1T3_QUESU	1.3e-63	52.61	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26369 PE=4 SV=1	[more]
tr\|A0A2N9FCJ4\|A0A2N9FCJ4_FAGSY	6.2e-61	48.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12483 PE=4 SV=1	[more]
tr\|A0A2I4G389\|A0A2I4G389_9ROSI	5.8e-59	49.53	uncharacterized protein LOC109004312 OS=Juglans regia OX=51240 GN=LOC109004312 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G013240.1	CsaV3_4G013240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..177
None	No IPR available	PANTHER	PTHR33646	FAMILY NOT NAMED	coord: 1..290
None	No IPR available	PANTHER	PTHR33646:SF2	F20H23.8 PROTEIN-RELATED	coord: 1..290

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G013240	CSPI04G11210	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G013240	Cucsa.024110	Cucumber (Gy14) v1	cgycucB530
CsaV3_4G013240	CmaCh07G011630	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G013240	CmoCh07G012110	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G013240	Cp4.1LG19g02000	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G013240	Cp4.1LG10g06930	Cucurbita pepo (Zucchini)	cpecucB0083
CsaV3_4G013240	CsGy4G010770	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G013240	Carg12604	Silver-seed gourd	carcucB0313
CsaV3_4G013240	Carg19569	Silver-seed gourd	carcucB0662
CsaV3_4G013240	Cla012128	Watermelon (97103) v1	cucwmB356
CsaV3_4G013240	MELO3C008806	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G013240	ClCG04G005350	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G013240	Lsi01G016690	Bottle gourd (USVL1VR-Ls)	cuclsiB280
CsaV3_4G013240	MELO3C008806.2	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G013240	Cla97C04G071910	Watermelon (97103) v2	cucwmbB309
CsaV3_4G013240	Bhi03G001842	Wax gourd	cucwgoB410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G013240	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G013240	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G013240	Cucurbita pepo (Zucchini)	cpecucB0085