CsaV3_4G012070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G012070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionATP-dependent DNA helicase
Locationchr4 : 9363011 .. 9363628 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGATTCCATGATCTTGCACCTTTAGGCTTTAGTTATTAGATTCTAACTAGCCAAAGTTGTGAGATTGTTATTTGATATGTCATGAAATGATTGTTAGACGATTCAGTAATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGAACTTCACCCATTGAACATAGCAGCATGTATATATCCATGCTGCTTTTTATGGCATGAAAAAAGTTTTACTTCCAAACCAAAAACTATCAACGGTAGTAGTTATTGAAAATAAGCTAATTAAATTTGAACATGAGAGGAACTAGACTTAATGTTGAAAGGGATGCAAGCGACCAC

mRNA sequence

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Coding sequence (CDS)

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Protein sequence

MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKFEAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Homology
[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: KGN53915.1 (hypothetical protein Csa_4G188670 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 6.5e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 421 MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 480

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 111
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 481 EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 530

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: KGN53916.1 (hypothetical protein Csa_4G188732 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YR EGNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 371 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 430

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 431 AWKMWHEDGLSIQKIA 446

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_011653463.1 (PREDICTED: ATP-dependent DNA helicase Q-like SIM [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YR EGNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 595 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 654

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 655 AWKMWHEDGLSIQKIA 670

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_008442015.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_008442016.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsaV3_4G012070 vs. TrEMBL
Match: tr|A0A0A0KWB6|A0A0A0KWB6_CUCSA (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.3e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 421 MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 480

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 111
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 481 EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 530

[Close]
BLAST of CsaV3_4G012070 vs. TrEMBL
Match: tr|A0A0A0L1A4|A0A0A0L1A4_CUCSA (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YR EGNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 371 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 430

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 431 AWKMWHEDGLSIQKIA 446

[Close]
BLAST of CsaV3_4G012070 vs. TrEMBL
Match: tr|A0A1S3B4Q2|A0A1S3B4Q2_CUCME (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsaV3_4G012070 vs. TrEMBL
Match: tr|A0A1S3B4R4|A0A1S3B4R4_CUCME (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsaV3_4G012070 vs. TrEMBL
Match: tr|A0A1S3B4Q5|A0A1S3B4Q5_CUCME (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103485999 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.7e-15
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKFEA 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YRE               N+RRPLA  KFEA
Sbjct: 599 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREP--------------NKRRPLAPEKFEA 658

Query: 63  WKMWHEDGLSIQRIA 78
           WKMWHE GLS+Q+IA
Sbjct: 659 WKMWHEHGLSVQKIA 659

The following BLAST results are available for this feature:
BLAST of CsaV3_4G012070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53915.16.5e-55100.00hypothetical protein Csa_4G188670 [Cucumis sativus][more]
KGN53916.18.3e-2684.21hypothetical protein Csa_4G188732 [Cucumis sativus][more]
XP_011653463.18.3e-2684.21PREDICTED: ATP-dependent DNA helicase Q-like SIM [Cucumis sativus][more]
XP_008442015.11.1e-2584.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo][more]
XP_008442016.11.1e-2584.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo][more]
BLAST of CsaV3_4G012070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G012070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G012070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWB6|A0A0A0KWB6_CUCSA4.3e-55100.00ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1[more]
tr|A0A0A0L1A4|A0A0A0L1A4_CUCSA5.5e-2684.21ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1[more]
tr|A0A1S3B4Q2|A0A1S3B4Q2_CUCME7.2e-2684.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
tr|A0A1S3B4R4|A0A1S3B4R4_CUCME7.2e-2684.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
tr|A0A1S3B4Q5|A0A1S3B4Q5_CUCME9.7e-1562.67ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103485999 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005657 replication fork
molecular_function GO:0003674 molecular_function
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0043140 ATP-dependent 3'-5' DNA helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G012070.1CsaV3_4G012070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G012070CSPI04G11050Wild cucumber (PI 183967)cpicucB213
CsaV3_4G012070CmoCh07G011940Cucurbita moschata (Rifu)cmocucB1000
CsaV3_4G012070Cp4.1LG19g02030Cucurbita pepo (Zucchini)cpecucB0612
CsaV3_4G012070Carg13358Silver-seed gourdcarcucB0615
CsaV3_4G012070Cla012113Watermelon (97103) v1cucwmB356
CsaV3_4G012070MELO3C008833Melon (DHL92) v3.5.1cucmeB328
CsaV3_4G012070Lsi01G016840Bottle gourd (USVL1VR-Ls)cuclsiB280
CsaV3_4G012070Cla97C04G072070Watermelon (97103) v2cucwmbB309
CsaV3_4G012070Bhi03G001856Wax gourdcucwgoB410
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G012070Silver-seed gourdcarcucB0662
CsaV3_4G012070Cucumber (Gy14) v2cgybcucB171
CsaV3_4G012070Cucumber (Gy14) v1cgycucB516
CsaV3_4G012070Cucurbita maxima (Rimu)cmacucB0792
CsaV3_4G012070Cucurbita maxima (Rimu)cmacucB1017
CsaV3_4G012070Cucurbita moschata (Rifu)cmocucB0774
CsaV3_4G012070Cucurbita pepo (Zucchini)cpecucB0085
CsaV3_4G012070Melon (DHL92) v3.6.1cucmedB321
CsaV3_4G012070Watermelon (Charleston Gray)cucwcgB320